data_1MKP
#
_model_server_result.job_id            wbawFWEb5F3SWUSCngZTXw 
_model_server_result.datetime_utc      '2024-12-26 14:29:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mkp 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
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_entry.id    1MKP 
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_exptl.entry_id    1MKP 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MKP 
_cell.length_a            90 
_cell.length_b            90 
_cell.length_c            68.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1MKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
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_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     1MKP 
_atom_sites.fract_transf_matrix[1][1]    0.011111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011111 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 500 500 CL CL . 
C 3 MPD A 1 501 501 MPD MPD . 
D 4 HOH A 1 400 400 HOH HOH . 
D 4 HOH A 2 401 401 HOH HOH . 
D 4 HOH A 3 402 402 HOH HOH . 
D 4 HOH A 4 403 403 HOH HOH . 
D 4 HOH A 5 404 404 HOH HOH . 
D 4 HOH A 6 405 405 HOH HOH . 
D 4 HOH A 7 406 406 HOH HOH . 
D 4 HOH A 8 407 407 HOH HOH . 
D 4 HOH A 9 408 408 HOH HOH . 
D 4 HOH A 10 409 409 HOH HOH . 
D 4 HOH A 11 410 410 HOH HOH . 
D 4 HOH A 12 411 411 HOH HOH . 
D 4 HOH A 13 412 412 HOH HOH . 
D 4 HOH A 14 413 413 HOH HOH . 
D 4 HOH A 15 414 414 HOH HOH . 
D 4 HOH A 16 415 415 HOH HOH . 
D 4 HOH A 17 416 416 HOH HOH . 
D 4 HOH A 18 417 417 HOH HOH . 
D 4 HOH A 19 418 418 HOH HOH . 
D 4 HOH A 20 419 419 HOH HOH . 
D 4 HOH A 21 420 420 HOH HOH . 
D 4 HOH A 22 421 421 HOH HOH . 
D 4 HOH A 23 422 422 HOH HOH . 
D 4 HOH A 24 423 423 HOH HOH . 
D 4 HOH A 25 424 424 HOH HOH . 
D 4 HOH A 26 425 425 HOH HOH . 
D 4 HOH A 27 426 426 HOH HOH . 
D 4 HOH A 28 427 427 HOH HOH . 
D 4 HOH A 29 428 428 HOH HOH . 
D 4 HOH A 30 429 429 HOH HOH . 
D 4 HOH A 31 430 430 HOH HOH . 
D 4 HOH A 32 431 431 HOH HOH . 
D 4 HOH A 33 432 432 HOH HOH . 
D 4 HOH A 34 433 433 HOH HOH . 
D 4 HOH A 35 434 434 HOH HOH . 
D 4 HOH A 36 435 435 HOH HOH . 
D 4 HOH A 37 436 436 HOH HOH . 
D 4 HOH A 38 437 437 HOH HOH . 
D 4 HOH A 39 438 438 HOH HOH . 
D 4 HOH A 40 439 439 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 3 14.721 57.205 12.381 1 59.23 ? C1 MPD 501 A 1 
HETATM 2 C C2 MPD . . . C 3 14.636 56.376 11.113 1 59.36 ? C2 MPD 501 A 1 
HETATM 3 O O2 MPD . . . C 3 14.805 54.999 11.688 1 59.5 ? O2 MPD 501 A 1 
HETATM 4 C CM MPD . . . C 3 13.384 56.124 10.318 1 59.36 ? CM MPD 501 A 1 
HETATM 5 C C3 MPD . . . C 3 15.827 56.726 10.154 1 59.05 ? C3 MPD 501 A 1 
HETATM 6 C C4 MPD . . . C 3 17.089 56.965 10.834 1 58.72 ? C4 MPD 501 A 1 
HETATM 7 O O4 MPD . . . C 3 17.331 55.711 11.468 1 59.24 ? O4 MPD 501 A 1 
HETATM 8 C C5 MPD . . . C 3 18.209 57.322 9.835 1 58.32 ? C5 MPD 501 A 1 
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_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           8 
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