data_1ML4 # _model_server_result.job_id gFQkw7rxd7dIcWron8A68w _model_server_result.datetime_utc '2024-12-01 11:57:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ml4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":385}' # _entry.id 1ML4 # _exptl.entry_id 1ML4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-(PHOSPHONACETYL)-L-ASPARTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ML4 _cell.length_a 81.095 _cell.length_b 81.095 _cell.length_c 141.959 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ML4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PQS trimeric 3 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3 A,B,C 2 1 A,B,C 3 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 40.5475 70.23033 0 5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -40.5475 70.23033 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H10 N O8 P' _chem_comp.formula_weight 255.119 _chem_comp.id PAL _chem_comp.mon_nstd_flag . _chem_comp.name 'N-(PHOSPHONACETYL)-L-ASPARTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P PAL doub 237 n n P O2P PAL sing 238 n n P O3P PAL sing 239 n n P C1P PAL sing 240 n n O2P HOP2 PAL sing 241 n n O3P HOP3 PAL sing 242 n n C1P C1 PAL sing 243 n n C1P H1P1 PAL sing 244 n n C1P H1P2 PAL sing 245 n n C1 O1 PAL doub 246 n n C1 N2 PAL sing 247 n n N2 C2 PAL sing 248 n n N2 HN2 PAL sing 249 n n C2 C4 PAL sing 250 n n C2 C3 PAL sing 251 n n C2 H2 PAL sing 252 n n C4 O2 PAL doub 253 n n C4 O3 PAL sing 254 n n O3 HO3 PAL sing 255 n n C3 C5 PAL sing 256 n n C3 H31 PAL sing 257 n n C3 H32 PAL sing 258 n n C5 O4 PAL doub 259 n n C5 O5 PAL sing 260 n n O5 HO5 PAL sing 261 n n # _atom_sites.entry_id 1ML4 _atom_sites.fract_transf_matrix[1][1] 0.012331 _atom_sites.fract_transf_matrix[1][2] 0.007119 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014239 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PAL A 1 385 385 PAL PAL . C 3 HOH A 1 386 309 HOH HOH . C 3 HOH A 2 387 310 HOH HOH . C 3 HOH A 3 388 311 HOH HOH . C 3 HOH A 4 389 312 HOH HOH . C 3 HOH A 5 390 313 HOH HOH . C 3 HOH A 6 391 314 HOH HOH . C 3 HOH A 7 392 315 HOH HOH . C 3 HOH A 8 393 316 HOH HOH . C 3 HOH A 9 394 317 HOH HOH . C 3 HOH A 10 395 318 HOH HOH . C 3 HOH A 11 396 319 HOH HOH . C 3 HOH A 12 397 320 HOH HOH . C 3 HOH A 13 398 321 HOH HOH . C 3 HOH A 14 399 322 HOH HOH . C 3 HOH A 15 400 323 HOH HOH . C 3 HOH A 16 401 324 HOH HOH . C 3 HOH A 17 402 325 HOH HOH . C 3 HOH A 18 403 326 HOH HOH . C 3 HOH A 19 404 327 HOH HOH . C 3 HOH A 20 405 328 HOH HOH . C 3 HOH A 21 406 329 HOH HOH . C 3 HOH A 22 407 330 HOH HOH . C 3 HOH A 23 408 331 HOH HOH . C 3 HOH A 24 409 332 HOH HOH . C 3 HOH A 25 410 333 HOH HOH . C 3 HOH A 26 411 334 HOH HOH . C 3 HOH A 27 412 335 HOH HOH . C 3 HOH A 28 413 336 HOH HOH . C 3 HOH A 29 414 337 HOH HOH . C 3 HOH A 30 415 338 HOH HOH . C 3 HOH A 31 416 339 HOH HOH . C 3 HOH A 32 417 340 HOH HOH . C 3 HOH A 33 418 341 HOH HOH . C 3 HOH A 34 419 342 HOH HOH . C 3 HOH A 35 420 343 HOH HOH . C 3 HOH A 36 421 344 HOH HOH . C 3 HOH A 37 422 345 HOH HOH . C 3 HOH A 38 423 346 HOH HOH . C 3 HOH A 39 424 347 HOH HOH . C 3 HOH A 40 425 348 HOH HOH . C 3 HOH A 41 426 349 HOH HOH . C 3 HOH A 42 427 350 HOH HOH . C 3 HOH A 43 428 351 HOH HOH . C 3 HOH A 44 429 352 HOH HOH . C 3 HOH A 45 430 353 HOH HOH . C 3 HOH A 46 431 354 HOH HOH . C 3 HOH A 47 432 355 HOH HOH . C 3 HOH A 48 433 356 HOH HOH . C 3 HOH A 49 434 357 HOH HOH . C 3 HOH A 50 435 358 HOH HOH . C 3 HOH A 51 436 359 HOH HOH . C 3 HOH A 52 437 360 HOH HOH . C 3 HOH A 53 438 361 HOH HOH . C 3 HOH A 54 439 362 HOH HOH . C 3 HOH A 55 440 363 HOH HOH . C 3 HOH A 56 441 364 HOH HOH . C 3 HOH A 57 442 365 HOH HOH . C 3 HOH A 58 443 366 HOH HOH . C 3 HOH A 59 444 367 HOH HOH . C 3 HOH A 60 445 368 HOH HOH . C 3 HOH A 61 446 369 HOH HOH . C 3 HOH A 62 447 370 HOH HOH . C 3 HOH A 63 448 371 HOH HOH . C 3 HOH A 64 449 372 HOH HOH . C 3 HOH A 65 450 373 HOH HOH . C 3 HOH A 66 451 374 HOH HOH . C 3 HOH A 67 452 375 HOH HOH . C 3 HOH A 68 453 376 HOH HOH . C 3 HOH A 69 454 377 HOH HOH . C 3 HOH A 70 455 378 HOH HOH . C 3 HOH A 71 456 379 HOH HOH . C 3 HOH A 72 457 380 HOH HOH . C 3 HOH A 73 458 381 HOH HOH . C 3 HOH A 74 459 382 HOH HOH . C 3 HOH A 75 460 383 HOH HOH . C 3 HOH A 76 461 384 HOH HOH . C 3 HOH A 77 462 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PAL . . . B 2 -6.705 32.351 2.557 1 16.7 ? P PAL 385 A 1 HETATM 2 O O1P PAL . . . B 2 -7.108 32.796 3.89 1 15.64 ? O1P PAL 385 A 1 HETATM 3 O O2P PAL . . . B 2 -5.235 32.182 2.45 1 15.49 ? O2P PAL 385 A 1 HETATM 4 O O3P PAL . . . B 2 -7.178 33.323 1.474 1 14.67 ? O3P PAL 385 A 1 HETATM 5 C C1P PAL . . . B 2 -7.456 30.761 2.017 1 16.34 ? C1P PAL 385 A 1 HETATM 6 C C1 PAL . . . B 2 -8.883 30.686 2.452 1 18.23 ? C1 PAL 385 A 1 HETATM 7 O O1 PAL . . . B 2 -9.81 31.195 1.787 1 21.07 ? O1 PAL 385 A 1 HETATM 8 N N2 PAL . . . B 2 -9.144 30.068 3.553 1 18.99 ? N2 PAL 385 A 1 HETATM 9 C C2 PAL . . . B 2 -10.385 29.832 4.199 1 20.32 ? C2 PAL 385 A 1 HETATM 10 C C4 PAL . . . B 2 -11.086 30.988 4.831 1 20.48 ? C4 PAL 385 A 1 HETATM 11 O O2 PAL . . . B 2 -12.182 30.831 5.404 1 21.98 ? O2 PAL 385 A 1 HETATM 12 O O3 PAL . . . B 2 -10.577 32.162 4.804 1 17.76 ? O3 PAL 385 A 1 HETATM 13 C C3 PAL . . . B 2 -10.179 28.669 5.275 1 20.69 ? C3 PAL 385 A 1 HETATM 14 C C5 PAL . . . B 2 -9.445 29.018 6.59 1 21.36 ? C5 PAL 385 A 1 HETATM 15 O O4 PAL . . . B 2 -9.034 30.212 6.791 1 19.34 ? O4 PAL 385 A 1 HETATM 16 O O5 PAL . . . B 2 -9.241 28.121 7.49 1 20.22 ? O5 PAL 385 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #