data_1MM9 # _model_server_result.job_id 1J3LHgo54rF5EqfdK-PLLw _model_server_result.datetime_utc '2024-11-17 20:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":5001}' # _entry.id 1MM9 # _exptl.entry_id 1MM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MM9 _cell.length_a 56.9 _cell.length_b 56.9 _cell.length_c 170.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4 A,B,C,D 2 1,5,6,4 A,B,C,D 3 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 x,-y+1/2,-z+5/4 1 0 0 0 -1 0 0 0 -1 0 28.45 213.5 3 'crystal symmetry operation' 12_555 y,-x+1/2,z+1/4 0 1 0 -1 0 0 0 0 1 0 28.45 42.7 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 170.8 5 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 170.8 6 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 205 n n C1 H1C1 MRD sing 206 n n C1 H1C2 MRD sing 207 n n C1 H1C3 MRD sing 208 n n C2 O2 MRD sing 209 n n C2 CM MRD sing 210 n n C2 C3 MRD sing 211 n n O2 H2 MRD sing 212 n n CM HMC1 MRD sing 213 n n CM HMC2 MRD sing 214 n n CM HMC3 MRD sing 215 n n C3 C4 MRD sing 216 n n C3 H3C1 MRD sing 217 n n C3 H3C2 MRD sing 218 n n C4 O4 MRD sing 219 n n C4 C5 MRD sing 220 n n C4 H4 MRD sing 221 n n O4 HA MRD sing 222 n n C5 H5C1 MRD sing 223 n n C5 H5C2 MRD sing 224 n n C5 H5C3 MRD sing 225 n n # _atom_sites.entry_id 1MM9 _atom_sites.fract_transf_matrix[1][1] 0.017575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MRD A 1 5001 5001 MRD MPD . C 2 MRD A 1 5002 5002 MRD MPD . D 3 HOH A 1 6001 6001 HOH HOH . D 3 HOH A 2 6002 6002 HOH HOH . D 3 HOH A 3 6003 6003 HOH HOH . D 3 HOH A 4 6004 6004 HOH HOH . D 3 HOH A 5 6005 6005 HOH HOH . D 3 HOH A 6 6006 6006 HOH HOH . D 3 HOH A 7 6007 6007 HOH HOH . D 3 HOH A 8 6008 6008 HOH HOH . D 3 HOH A 9 6009 6009 HOH HOH . D 3 HOH A 10 6010 6010 HOH HOH . D 3 HOH A 11 6011 6011 HOH HOH . D 3 HOH A 12 6012 6012 HOH HOH . D 3 HOH A 13 6013 6013 HOH HOH . D 3 HOH A 14 6014 6014 HOH HOH . D 3 HOH A 15 6015 6015 HOH HOH . D 3 HOH A 16 6016 6016 HOH HOH . D 3 HOH A 17 6017 6017 HOH HOH . D 3 HOH A 18 6018 6018 HOH HOH . D 3 HOH A 19 6019 6019 HOH HOH . D 3 HOH A 20 6020 6020 HOH HOH . D 3 HOH A 21 6021 6021 HOH HOH . D 3 HOH A 22 6022 6022 HOH HOH . D 3 HOH A 23 6023 6023 HOH HOH . D 3 HOH A 24 6024 6024 HOH HOH . D 3 HOH A 25 6025 6025 HOH HOH . D 3 HOH A 26 6026 6026 HOH HOH . D 3 HOH A 27 6027 6027 HOH HOH . D 3 HOH A 28 6028 6028 HOH HOH . D 3 HOH A 29 6029 6029 HOH HOH . D 3 HOH A 30 6030 6030 HOH HOH . D 3 HOH A 31 6031 6031 HOH HOH . D 3 HOH A 32 6032 6032 HOH HOH . D 3 HOH A 33 6033 6033 HOH HOH . D 3 HOH A 34 6034 6034 HOH HOH . D 3 HOH A 35 6035 6035 HOH HOH . D 3 HOH A 36 6036 6036 HOH HOH . D 3 HOH A 37 6037 6037 HOH HOH . D 3 HOH A 38 6038 6038 HOH HOH . D 3 HOH A 39 6039 6039 HOH HOH . D 3 HOH A 40 6040 6040 HOH HOH . D 3 HOH A 41 6041 6041 HOH HOH . D 3 HOH A 42 6042 6042 HOH HOH . D 3 HOH A 43 6043 6043 HOH HOH . D 3 HOH A 44 6044 6044 HOH HOH . D 3 HOH A 45 6045 6045 HOH HOH . D 3 HOH A 46 6046 6046 HOH HOH . D 3 HOH A 47 6047 6047 HOH HOH . D 3 HOH A 48 6048 6048 HOH HOH . D 3 HOH A 49 6049 6049 HOH HOH . D 3 HOH A 50 6050 6050 HOH HOH . D 3 HOH A 51 6051 6051 HOH HOH . D 3 HOH A 52 6052 6052 HOH HOH . D 3 HOH A 53 6053 6053 HOH HOH . D 3 HOH A 54 6054 6054 HOH HOH . D 3 HOH A 55 6055 6055 HOH HOH . D 3 HOH A 56 6056 6056 HOH HOH . D 3 HOH A 57 6057 6057 HOH HOH . D 3 HOH A 58 6058 6058 HOH HOH . D 3 HOH A 59 6059 6059 HOH HOH . D 3 HOH A 60 6060 6060 HOH HOH . D 3 HOH A 61 6061 6061 HOH HOH . D 3 HOH A 62 6062 6062 HOH HOH . D 3 HOH A 63 6063 6063 HOH HOH . D 3 HOH A 64 6064 6064 HOH HOH . D 3 HOH A 65 6065 6065 HOH HOH . D 3 HOH A 66 6066 6066 HOH HOH . D 3 HOH A 67 6067 6067 HOH HOH . D 3 HOH A 68 6068 6068 HOH HOH . D 3 HOH A 69 6069 6069 HOH HOH . D 3 HOH A 70 6070 6070 HOH HOH . D 3 HOH A 71 6071 6071 HOH HOH . D 3 HOH A 72 6072 6072 HOH HOH . D 3 HOH A 73 6073 6073 HOH HOH . D 3 HOH A 74 6074 6074 HOH HOH . D 3 HOH A 75 6075 6075 HOH HOH . D 3 HOH A 76 6076 6076 HOH HOH . D 3 HOH A 77 6077 6077 HOH HOH . D 3 HOH A 78 6078 6078 HOH HOH . D 3 HOH A 79 6079 6079 HOH HOH . D 3 HOH A 80 6080 6080 HOH HOH . D 3 HOH A 81 6081 6081 HOH HOH . D 3 HOH A 82 6082 6082 HOH HOH . D 3 HOH A 83 6083 6083 HOH HOH . D 3 HOH A 84 6084 6084 HOH HOH . D 3 HOH A 85 6085 6085 HOH HOH . D 3 HOH A 86 6086 6086 HOH HOH . D 3 HOH A 87 6087 6087 HOH HOH . D 3 HOH A 88 6088 6088 HOH HOH . D 3 HOH A 89 6089 6089 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . B 2 9.223 1.323 77.34 1 25.71 ? C1 MRD 5001 A 1 HETATM 2 C C2 MRD . . . B 2 10.525 1.135 76.627 1 29.89 ? C2 MRD 5001 A 1 HETATM 3 O O2 MRD . . . B 2 11.517 1.751 77.445 1 30.74 ? O2 MRD 5001 A 1 HETATM 4 C CM MRD . . . B 2 10.533 1.701 75.229 1 27.19 ? CM MRD 5001 A 1 HETATM 5 C C3 MRD . . . B 2 10.714 -0.367 76.575 1 32.23 ? C3 MRD 5001 A 1 HETATM 6 C C4 MRD . . . B 2 11.182 -1.046 77.882 1 33.19 ? C4 MRD 5001 A 1 HETATM 7 O O4 MRD . . . B 2 12.324 -0.376 78.43 1 32.42 ? O4 MRD 5001 A 1 HETATM 8 C C5 MRD . . . B 2 11.652 -2.456 77.505 1 35.21 ? C5 MRD 5001 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 597 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #