data_1MN9
#
_model_server_result.job_id            '_DxNnRxDa66plZDPrqLx2A' 
_model_server_result.datetime_utc      '2024-10-19 11:27:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mn9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":161}' 
#
_entry.id    1MN9 
#
_exptl.entry_id    1MN9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              484.144 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'RIBAVIRIN TRIPHOSPHATE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1MN9 
_cell.length_a            71.731 
_cell.length_b            71.731 
_cell.length_c            153.818 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MN9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 107.5965 62.120868 51.272667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O2A RTP . A RTP 160 1_555 D MG MG . A MG 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc2 E O1B RTP . A RTP 160 1_555 D MG MG . A MG 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc3 E O3G RTP . A RTP 160 1_555 D MG MG . A MG 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc4 F O2A RTP . A RTP 161 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? 
metalc ? metalc5 F O3G RTP . A RTP 161 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc6 F O1B RTP . A RTP 161 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
metalc ? metalc7 G O3G RTP . A RTP 162 1_555 I MG MG . C MG 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc8 G O2A RTP . A RTP 162 1_555 I MG MG . C MG 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc9 G O1B RTP . A RTP 162 1_555 I MG MG . C MG 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc10 D MG MG . A MG 164 1_555 J O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc11 D MG MG . A MG 164 1_555 J O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc12 D MG MG . A MG 164 1_555 J O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc13 J O HOH . A HOH 1016 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? 
#
_chem_comp.formula           'C8 H15 N4 O14 P3' 
_chem_comp.formula_weight    484.144 
_chem_comp.id                RTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'RIBAVIRIN TRIPHOSPHATE' 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G RTP doub 264 n n 
PG O2G RTP sing 265 n n 
PG O3G RTP sing 266 n n 
PG O3B RTP sing 267 n n 
O2G HOG2 RTP sing 268 n n 
O3G HOG3 RTP sing 269 n n 
O3B PB RTP sing 270 n n 
PB O1B RTP doub 271 n n 
PB O2B RTP sing 272 n n 
PB O3A RTP sing 273 n n 
O2B HOB2 RTP sing 274 n n 
O3A PA RTP sing 275 n n 
PA O1A RTP doub 276 n n 
PA O2A RTP sing 277 n n 
PA O5' RTP sing 278 n n 
O2A HOA2 RTP sing 279 n n 
O5' C5' RTP sing 280 n n 
C5' C4' RTP sing 281 n n 
C5' "H5'1" RTP sing 282 n n 
C5' "H5'2" RTP sing 283 n n 
C4' O4' RTP sing 284 n n 
C4' C3' RTP sing 285 n n 
C4' H4' RTP sing 286 n n 
O4' C1' RTP sing 287 n n 
C1' N1 RTP sing 288 n n 
C1' C2' RTP sing 289 n n 
C1' H1' RTP sing 290 n n 
N1 N2 RTP sing 291 n y 
N1 C5 RTP sing 292 n y 
N2 C3 RTP doub 293 n y 
N3 C6 RTP sing 294 n n 
N3 HN31 RTP sing 295 n n 
N3 HN32 RTP sing 296 n n 
C6 O3 RTP doub 297 n n 
C6 C3 RTP sing 298 n n 
C3 N4 RTP sing 299 n y 
N4 C5 RTP doub 300 n y 
C5 H5 RTP sing 301 n n 
C2' O2' RTP sing 302 n n 
C2' C3' RTP sing 303 n n 
C2' H2' RTP sing 304 n n 
O2' HO2' RTP sing 305 n n 
C3' O3' RTP sing 306 n n 
C3' H3' RTP sing 307 n n 
O3' HO3' RTP sing 308 n n 
#
_atom_sites.entry_id                     1MN9 
_atom_sites.fract_transf_matrix[1][1]    0.013941 
_atom_sites.fract_transf_matrix[1][2]    0.008049 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016098 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006501 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 MG A 1 164 164 MG MG2 . 
E 3 RTP A 1 160 160 RTP RTP . 
F 3 RTP A 1 161 161 RTP RTP . 
G 3 RTP A 1 162 162 RTP RTP . 
H 2 MG B 1 163 163 MG MG2 . 
I 2 MG C 1 165 165 MG MG2 . 
J 4 HOH A 1 1001 1001 HOH HOH . 
J 4 HOH A 2 1002 1002 HOH HOH . 
J 4 HOH A 3 1003 1003 HOH HOH . 
J 4 HOH A 4 1004 1004 HOH HOH . 
J 4 HOH A 5 1005 1005 HOH HOH . 
J 4 HOH A 6 1016 1016 HOH HOH . 
J 4 HOH A 7 1020 1020 HOH HOH . 
J 4 HOH A 8 1021 1021 HOH HOH . 
J 4 HOH A 9 1023 1023 HOH HOH . 
J 4 HOH A 10 1032 1032 HOH HOH . 
J 4 HOH A 11 1033 1033 HOH HOH . 
J 4 HOH A 12 1036 1036 HOH HOH . 
J 4 HOH A 13 1037 1037 HOH HOH . 
K 4 HOH B 1 1006 1006 HOH HOH . 
K 4 HOH B 2 1007 1007 HOH HOH . 
K 4 HOH B 3 1008 1008 HOH HOH . 
K 4 HOH B 4 1009 1009 HOH HOH . 
K 4 HOH B 5 1013 1013 HOH HOH . 
K 4 HOH B 6 1014 1014 HOH HOH . 
K 4 HOH B 7 1015 1015 HOH HOH . 
K 4 HOH B 8 1017 1017 HOH HOH . 
K 4 HOH B 9 1018 1018 HOH HOH . 
K 4 HOH B 10 1019 1019 HOH HOH . 
K 4 HOH B 11 1022 1022 HOH HOH . 
K 4 HOH B 12 1025 1025 HOH HOH . 
K 4 HOH B 13 1026 1026 HOH HOH . 
K 4 HOH B 14 1028 1028 HOH HOH . 
K 4 HOH B 15 1031 1031 HOH HOH . 
K 4 HOH B 16 1034 1034 HOH HOH . 
K 4 HOH B 17 1035 1035 HOH HOH . 
L 4 HOH C 1 1010 1010 HOH HOH . 
L 4 HOH C 2 1011 1011 HOH HOH . 
L 4 HOH C 3 1012 1012 HOH HOH . 
L 4 HOH C 4 1024 1024 HOH HOH . 
L 4 HOH C 5 1027 1027 HOH HOH . 
L 4 HOH C 6 1029 1029 HOH HOH . 
L 4 HOH C 7 1030 1030 HOH HOH . 
L 4 HOH C 8 1038 1038 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG RTP . . . F 3 36.296 36.827 11.228 1 66.26 ? PG RTP 161 A 1 
HETATM 2 O O1G RTP . . . F 3 35.564 36.84 12.521 1 64.98 ? O1G RTP 161 A 1 
HETATM 3 O O2G RTP . . . F 3 37.779 36.9 11.265 1 66.95 ? O2G RTP 161 A 1 
HETATM 4 O O3G RTP . . . F 3 35.887 37.81 10.192 1 66.48 ? O3G RTP 161 A 1 
HETATM 5 O O3B RTP . . . F 3 35.995 35.388 10.584 1 65.3 ? O3B RTP 161 A 1 
HETATM 6 P PB RTP . . . F 3 36.393 34.616 9.235 1 64.04 ? PB RTP 161 A 1 
HETATM 7 O O1B RTP . . . F 3 36.888 35.625 8.263 1 63.76 ? O1B RTP 161 A 1 
HETATM 8 O O2B RTP . . . F 3 37.237 33.44 9.554 1 63.62 ? O2B RTP 161 A 1 
HETATM 9 O O3A RTP . . . F 3 35.028 34.023 8.671 1 62.06 ? O3A RTP 161 A 1 
HETATM 10 P PA RTP . . . F 3 33.761 34.815 8.13 1 59.76 ? PA RTP 161 A 1 
HETATM 11 O O1A RTP . . . F 3 33.289 34.105 6.916 1 58.88 ? O1A RTP 161 A 1 
HETATM 12 O O2A RTP . . . F 3 34.13 36.249 8.047 1 59.72 ? O2A RTP 161 A 1 
HETATM 13 O O5' RTP . . . F 3 32.697 34.669 9.309 1 59.26 ? O5' RTP 161 A 1 
HETATM 14 C C5' RTP . . . F 3 32.795 35.472 10.49 1 58.12 ? C5' RTP 161 A 1 
HETATM 15 C C4' RTP . . . F 3 32.548 34.629 11.726 1 58.41 ? C4' RTP 161 A 1 
HETATM 16 O O4' RTP . . . F 3 31.181 34.126 11.728 1 59.01 ? O4' RTP 161 A 1 
HETATM 17 C C1' RTP . . . F 3 31.153 32.749 12.108 1 58.67 ? C1' RTP 161 A 1 
HETATM 18 N N1 RTP . . . F 3 30.827 31.992 10.91 1 60.97 ? N1 RTP 161 A 1 
HETATM 19 N N2 RTP . . . F 3 30.001 30.906 10.809 1 62.15 ? N2 RTP 161 A 1 
HETATM 20 N N3 RTP . . . F 3 28.559 28.792 9.855 1 68.48 ? N3 RTP 161 A 1 
HETATM 21 C C6 RTP . . . F 3 29.321 29.461 8.898 1 66.69 ? C6 RTP 161 A 1 
HETATM 22 O O3 RTP . . . F 3 29.319 29.082 7.714 1 67.45 ? O3 RTP 161 A 1 
HETATM 23 C C3 RTP . . . F 3 30.027 30.536 9.466 1 64.81 ? C3 RTP 161 A 1 
HETATM 24 N N4 RTP . . . F 3 30.861 31.398 8.762 1 64.28 ? N4 RTP 161 A 1 
HETATM 25 C C5 RTP . . . F 3 31.305 32.235 9.652 1 63.1 ? C5 RTP 161 A 1 
HETATM 26 C C2' RTP . . . F 3 32.541 32.382 12.633 1 57.17 ? C2' RTP 161 A 1 
HETATM 27 O O2' RTP . . . F 3 32.581 32.563 14.035 1 55.45 ? O2' RTP 161 A 1 
HETATM 28 C C3' RTP . . . F 3 33.387 33.373 11.853 1 57.43 ? C3' RTP 161 A 1 
HETATM 29 O O3' RTP . . . F 3 34.633 33.656 12.477 1 56.06 ? O3' RTP 161 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           29 
#