data_1MN9 # _model_server_result.job_id yHlQ97kxHmGsvaxKmyOX-Q _model_server_result.datetime_utc '2024-10-19 11:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":163}' # _entry.id 1MN9 # _exptl.entry_id 1MN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MN9 _cell.length_a 71.731 _cell.length_b 71.731 _cell.length_c 153.818 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 107.5965 62.120868 51.272667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2A RTP . A RTP 160 1_555 D MG MG . A MG 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 E O1B RTP . A RTP 160 1_555 D MG MG . A MG 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc3 E O3G RTP . A RTP 160 1_555 D MG MG . A MG 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc4 F O2A RTP . A RTP 161 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc5 F O3G RTP . A RTP 161 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc6 F O1B RTP . A RTP 161 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc7 G O3G RTP . A RTP 162 1_555 I MG MG . C MG 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc8 G O2A RTP . A RTP 162 1_555 I MG MG . C MG 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc9 G O1B RTP . A RTP 162 1_555 I MG MG . C MG 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc10 D MG MG . A MG 164 1_555 J O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc11 D MG MG . A MG 164 1_555 J O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc12 D MG MG . A MG 164 1_555 J O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc13 J O HOH . A HOH 1016 1_555 H MG MG . B MG 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MN9 _atom_sites.fract_transf_matrix[1][1] 0.013941 _atom_sites.fract_transf_matrix[1][2] 0.008049 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006501 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 164 164 MG MG2 . E 3 RTP A 1 160 160 RTP RTP . F 3 RTP A 1 161 161 RTP RTP . G 3 RTP A 1 162 162 RTP RTP . H 2 MG B 1 163 163 MG MG2 . I 2 MG C 1 165 165 MG MG2 . J 4 HOH A 1 1001 1001 HOH HOH . J 4 HOH A 2 1002 1002 HOH HOH . J 4 HOH A 3 1003 1003 HOH HOH . J 4 HOH A 4 1004 1004 HOH HOH . J 4 HOH A 5 1005 1005 HOH HOH . J 4 HOH A 6 1016 1016 HOH HOH . J 4 HOH A 7 1020 1020 HOH HOH . J 4 HOH A 8 1021 1021 HOH HOH . J 4 HOH A 9 1023 1023 HOH HOH . J 4 HOH A 10 1032 1032 HOH HOH . J 4 HOH A 11 1033 1033 HOH HOH . J 4 HOH A 12 1036 1036 HOH HOH . J 4 HOH A 13 1037 1037 HOH HOH . K 4 HOH B 1 1006 1006 HOH HOH . K 4 HOH B 2 1007 1007 HOH HOH . K 4 HOH B 3 1008 1008 HOH HOH . K 4 HOH B 4 1009 1009 HOH HOH . K 4 HOH B 5 1013 1013 HOH HOH . K 4 HOH B 6 1014 1014 HOH HOH . K 4 HOH B 7 1015 1015 HOH HOH . K 4 HOH B 8 1017 1017 HOH HOH . K 4 HOH B 9 1018 1018 HOH HOH . K 4 HOH B 10 1019 1019 HOH HOH . K 4 HOH B 11 1022 1022 HOH HOH . K 4 HOH B 12 1025 1025 HOH HOH . K 4 HOH B 13 1026 1026 HOH HOH . K 4 HOH B 14 1028 1028 HOH HOH . K 4 HOH B 15 1031 1031 HOH HOH . K 4 HOH B 16 1034 1034 HOH HOH . K 4 HOH B 17 1035 1035 HOH HOH . L 4 HOH C 1 1010 1010 HOH HOH . L 4 HOH C 2 1011 1011 HOH HOH . L 4 HOH C 3 1012 1012 HOH HOH . L 4 HOH C 4 1024 1024 HOH HOH . L 4 HOH C 5 1027 1027 HOH HOH . L 4 HOH C 6 1029 1029 HOH HOH . L 4 HOH C 7 1030 1030 HOH HOH . L 4 HOH C 8 1038 1038 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 35.119 _atom_site.Cartn_y 37.827 _atom_site.Cartn_z 8.355 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 163 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #