data_1MNH # _model_server_result.job_id SfXo-56jZlnGFOwkoy2b5g _model_server_result.datetime_utc '2025-03-04 22:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":154}' # _entry.id 1MNH # _exptl.entry_id 1MNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MNH _cell.length_a 29.7 _cell.length_b 119.51 _cell.length_c 58.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 93 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 154 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.181 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1MNH _atom_sites.fract_transf_matrix[1][1] 0.03367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 154 154 HEM HEM . C 3 HOH A 1 155 1 HOH HOH . C 3 HOH A 2 156 2 HOH HOH . C 3 HOH A 3 157 3 HOH HOH . C 3 HOH A 4 158 4 HOH HOH . C 3 HOH A 5 159 5 HOH HOH . C 3 HOH A 6 160 6 HOH HOH . C 3 HOH A 7 161 7 HOH HOH . C 3 HOH A 8 162 8 HOH HOH . C 3 HOH A 9 163 9 HOH HOH . C 3 HOH A 10 164 10 HOH HOH . C 3 HOH A 11 165 11 HOH HOH . C 3 HOH A 12 166 12 HOH HOH . C 3 HOH A 13 167 13 HOH HOH . C 3 HOH A 14 168 14 HOH HOH . C 3 HOH A 15 169 15 HOH HOH . C 3 HOH A 16 170 16 HOH HOH . C 3 HOH A 17 171 17 HOH HOH . C 3 HOH A 18 172 18 HOH HOH . C 3 HOH A 19 173 19 HOH HOH . C 3 HOH A 20 174 20 HOH HOH . C 3 HOH A 21 175 21 HOH HOH . C 3 HOH A 22 176 22 HOH HOH . C 3 HOH A 23 177 23 HOH HOH . C 3 HOH A 24 178 24 HOH HOH . C 3 HOH A 25 179 25 HOH HOH . C 3 HOH A 26 180 26 HOH HOH . C 3 HOH A 27 181 27 HOH HOH . C 3 HOH A 28 182 28 HOH HOH . C 3 HOH A 29 183 29 HOH HOH . C 3 HOH A 30 184 30 HOH HOH . C 3 HOH A 31 185 31 HOH HOH . C 3 HOH A 32 186 32 HOH HOH . C 3 HOH A 33 187 33 HOH HOH . C 3 HOH A 34 188 34 HOH HOH . C 3 HOH A 35 189 35 HOH HOH . C 3 HOH A 36 190 36 HOH HOH . C 3 HOH A 37 191 37 HOH HOH . C 3 HOH A 38 192 38 HOH HOH . C 3 HOH A 39 193 39 HOH HOH . C 3 HOH A 40 194 40 HOH HOH . C 3 HOH A 41 195 41 HOH HOH . C 3 HOH A 42 196 42 HOH HOH . C 3 HOH A 43 197 43 HOH HOH . C 3 HOH A 44 198 44 HOH HOH . C 3 HOH A 45 199 45 HOH HOH . C 3 HOH A 46 200 46 HOH HOH . C 3 HOH A 47 201 47 HOH HOH . C 3 HOH A 48 202 48 HOH HOH . C 3 HOH A 49 203 49 HOH HOH . C 3 HOH A 50 204 50 HOH HOH . C 3 HOH A 51 205 51 HOH HOH . C 3 HOH A 52 206 52 HOH HOH . C 3 HOH A 53 207 53 HOH HOH . C 3 HOH A 54 208 54 HOH HOH . C 3 HOH A 55 209 55 HOH HOH . C 3 HOH A 56 210 56 HOH HOH . C 3 HOH A 57 211 57 HOH HOH . C 3 HOH A 58 212 58 HOH HOH . C 3 HOH A 59 213 59 HOH HOH . C 3 HOH A 60 214 60 HOH HOH . C 3 HOH A 61 215 61 HOH HOH . C 3 HOH A 62 216 62 HOH HOH . C 3 HOH A 63 217 63 HOH HOH . C 3 HOH A 64 218 64 HOH HOH . C 3 HOH A 65 219 65 HOH HOH . C 3 HOH A 66 220 66 HOH HOH . C 3 HOH A 67 221 67 HOH HOH . C 3 HOH A 68 222 68 HOH HOH . C 3 HOH A 69 223 69 HOH HOH . C 3 HOH A 70 224 70 HOH HOH . C 3 HOH A 71 225 71 HOH HOH . C 3 HOH A 72 226 72 HOH HOH . C 3 HOH A 73 227 73 HOH HOH . C 3 HOH A 74 228 74 HOH HOH . C 3 HOH A 75 229 75 HOH HOH . C 3 HOH A 76 230 76 HOH HOH . C 3 HOH A 77 231 77 HOH HOH . C 3 HOH A 78 232 78 HOH HOH . C 3 HOH A 79 233 79 HOH HOH . C 3 HOH A 80 234 80 HOH HOH . C 3 HOH A 81 235 81 HOH HOH . C 3 HOH A 82 236 82 HOH HOH . C 3 HOH A 83 237 83 HOH HOH . C 3 HOH A 84 238 84 HOH HOH . C 3 HOH A 85 239 85 HOH HOH . C 3 HOH A 86 240 86 HOH HOH . C 3 HOH A 87 241 87 HOH HOH . C 3 HOH A 88 242 88 HOH HOH . C 3 HOH A 89 243 89 HOH HOH . C 3 HOH A 90 244 90 HOH HOH . C 3 HOH A 91 245 91 HOH HOH . C 3 HOH A 92 246 92 HOH HOH . C 3 HOH A 93 247 93 HOH HOH . C 3 HOH A 94 248 94 HOH HOH . C 3 HOH A 95 249 95 HOH HOH . C 3 HOH A 96 250 96 HOH HOH . C 3 HOH A 97 251 97 HOH HOH . C 3 HOH A 98 252 98 HOH HOH . C 3 HOH A 99 253 99 HOH HOH . C 3 HOH A 100 254 100 HOH HOH . C 3 HOH A 101 255 101 HOH HOH . C 3 HOH A 102 256 102 HOH HOH . C 3 HOH A 103 257 103 HOH HOH . C 3 HOH A 104 258 104 HOH HOH . C 3 HOH A 105 259 105 HOH HOH . C 3 HOH A 106 260 106 HOH HOH . C 3 HOH A 107 261 107 HOH HOH . C 3 HOH A 108 262 108 HOH HOH . C 3 HOH A 109 263 109 HOH HOH . C 3 HOH A 110 264 110 HOH HOH . C 3 HOH A 111 265 111 HOH HOH . C 3 HOH A 112 266 112 HOH HOH . C 3 HOH A 113 267 113 HOH HOH . C 3 HOH A 114 268 114 HOH HOH . C 3 HOH A 115 269 115 HOH HOH . C 3 HOH A 116 270 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 2.788 40.08 -39.948 1 14.66 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . B 2 -0.008 36.475 -41.77 1 9.05 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . B 2 -3.764 38.42 -39.371 1 10.21 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . B 2 -0.915 41.679 -37.222 1 8.17 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . B 2 2.371 38.923 -40.583 1 15.69 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . B 2 3.176 38.039 -41.382 1 16.69 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . B 2 2.401 37.065 -41.844 1 13.55 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . B 2 1.044 37.305 -41.417 1 14.01 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . B 2 2.728 35.884 -42.776 1 12.75 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . B 2 4.702 38.253 -41.61 1 20.64 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . B 2 5.607 37.394 -40.725 1 26.78 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . B 2 5.058 37.289 -39.304 1 30.15 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . B 2 5.18 38.358 -38.662 1 34.68 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . B 2 4.492 36.207 -39.018 1 31.87 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . B 2 -1.27 36.743 -41.285 1 7.92 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . B 2 -2.431 35.923 -41.571 1 6.91 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . B 2 -3.471 36.479 -40.909 1 9.03 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . B 2 -2.98 37.608 -40.157 1 7.99 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . B 2 -2.459 34.666 -42.46 1 5.57 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . B 2 -4.947 36.05 -40.853 1 7.4 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . B 2 -5.623 35.998 -41.994 1 12.58 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . B 2 -3.357 39.506 -38.652 1 8.42 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . B 2 -4.203 40.424 -37.916 1 13.15 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . B 2 -3.399 41.328 -37.322 1 13.41 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . B 2 -2.028 40.989 -37.64 1 9.83 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . B 2 -5.734 40.343 -37.884 1 9.13 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . B 2 -3.76 42.553 -36.443 1 16.51 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . B 2 -5.032 42.974 -36.366 1 20.34 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . B 2 0.336 41.524 -37.799 1 11.32 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . B 2 1.456 42.4 -37.543 1 13.9 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . B 2 2.467 41.931 -38.288 1 18.56 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . B 2 2.01 40.812 -39.065 1 10.83 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . B 2 1.435 43.596 -36.553 1 8.6 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . B 2 3.903 42.528 -38.424 1 19.62 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . B 2 3.821 43.5 -39.623 1 31.03 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . B 2 4.99 44.409 -39.879 1 37.92 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . B 2 4.888 45.643 -39.637 1 39.59 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . B 2 6.013 43.866 -40.377 1 36.54 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . B 2 1.061 38.436 -40.604 1 20.7 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . B 2 -1.631 37.757 -40.394 1 13.3 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . B 2 -2.03 39.873 -38.483 1 15.75 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . B 2 0.7 40.554 -38.711 1 12.09 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . B 2 -0.404 38.933 -39.249 1 15.95 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 43 #