data_1MO3 # _model_server_result.job_id 6BIYnTckHCogU45skS6-1Q _model_server_result.datetime_utc '2024-12-26 11:19:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mo3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1MO3 # _exptl.entry_id 1MO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MO3 _cell.length_a 108.503 _cell.length_b 108.503 _cell.length_c 72.885 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1MO3 _atom_sites.fract_transf_matrix[1][1] 0.009216 _atom_sites.fract_transf_matrix[1][2] 0.005321 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 500 500 ADP ADP . C 3 HOH A 1 501 330 HOH WAT . C 3 HOH A 2 502 331 HOH WAT . C 3 HOH A 3 503 332 HOH WAT . C 3 HOH A 4 504 333 HOH WAT . C 3 HOH A 5 505 334 HOH WAT . C 3 HOH A 6 506 335 HOH WAT . C 3 HOH A 7 507 336 HOH WAT . C 3 HOH A 8 508 337 HOH WAT . C 3 HOH A 9 509 338 HOH WAT . C 3 HOH A 10 510 339 HOH WAT . C 3 HOH A 11 511 340 HOH WAT . C 3 HOH A 12 512 341 HOH WAT . C 3 HOH A 13 513 342 HOH WAT . C 3 HOH A 14 514 343 HOH WAT . C 3 HOH A 15 515 344 HOH WAT . C 3 HOH A 16 516 345 HOH WAT . C 3 HOH A 17 517 346 HOH WAT . C 3 HOH A 18 518 347 HOH WAT . C 3 HOH A 19 519 348 HOH WAT . C 3 HOH A 20 520 349 HOH WAT . C 3 HOH A 21 521 350 HOH WAT . C 3 HOH A 22 522 351 HOH WAT . C 3 HOH A 23 523 352 HOH WAT . C 3 HOH A 24 524 353 HOH WAT . C 3 HOH A 25 525 354 HOH WAT . C 3 HOH A 26 526 355 HOH WAT . C 3 HOH A 27 527 356 HOH WAT . C 3 HOH A 28 528 357 HOH WAT . C 3 HOH A 29 529 358 HOH WAT . C 3 HOH A 30 530 359 HOH WAT . C 3 HOH A 31 531 360 HOH WAT . C 3 HOH A 32 532 361 HOH WAT . C 3 HOH A 33 533 362 HOH WAT . C 3 HOH A 34 534 363 HOH WAT . C 3 HOH A 35 535 364 HOH WAT . C 3 HOH A 36 536 365 HOH WAT . C 3 HOH A 37 537 366 HOH WAT . C 3 HOH A 38 538 367 HOH WAT . C 3 HOH A 39 539 368 HOH WAT . C 3 HOH A 40 540 369 HOH WAT . C 3 HOH A 41 541 370 HOH WAT . C 3 HOH A 42 542 371 HOH WAT . C 3 HOH A 43 543 372 HOH WAT . C 3 HOH A 44 544 373 HOH WAT . C 3 HOH A 45 545 374 HOH WAT . C 3 HOH A 46 546 375 HOH WAT . C 3 HOH A 47 547 376 HOH WAT . C 3 HOH A 48 548 377 HOH WAT . C 3 HOH A 49 549 378 HOH WAT . C 3 HOH A 50 550 379 HOH WAT . C 3 HOH A 51 551 380 HOH WAT . C 3 HOH A 52 552 381 HOH WAT . C 3 HOH A 53 553 382 HOH WAT . C 3 HOH A 54 554 383 HOH WAT . C 3 HOH A 55 555 384 HOH WAT . C 3 HOH A 56 556 385 HOH WAT . C 3 HOH A 57 557 386 HOH WAT . C 3 HOH A 58 558 387 HOH WAT . C 3 HOH A 59 559 388 HOH WAT . C 3 HOH A 60 560 389 HOH WAT . C 3 HOH A 61 561 390 HOH WAT . C 3 HOH A 62 562 391 HOH WAT . C 3 HOH A 63 563 392 HOH WAT . C 3 HOH A 64 564 393 HOH WAT . C 3 HOH A 65 565 394 HOH WAT . C 3 HOH A 66 566 395 HOH WAT . C 3 HOH A 67 567 396 HOH WAT . C 3 HOH A 68 568 397 HOH WAT . C 3 HOH A 69 569 398 HOH WAT . C 3 HOH A 70 570 399 HOH WAT . C 3 HOH A 71 571 400 HOH WAT . C 3 HOH A 72 572 401 HOH WAT . C 3 HOH A 73 573 402 HOH WAT . C 3 HOH A 74 574 403 HOH WAT . C 3 HOH A 75 575 404 HOH WAT . C 3 HOH A 76 576 405 HOH WAT . C 3 HOH A 77 577 406 HOH WAT . C 3 HOH A 78 578 407 HOH WAT . C 3 HOH A 79 579 408 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 35.168 75.571 -7.784 1 54.17 ? PB ADP 500 A 1 HETATM 2 O O1B ADP . . . B 2 34.934 75.759 -6.297 1 54.17 ? O1B ADP 500 A 1 HETATM 3 O O2B ADP . . . B 2 35.19 76.821 -8.589 1 54.17 ? O2B ADP 500 A 1 HETATM 4 O O3B ADP . . . B 2 36.424 74.69 -8.009 1 54.17 ? O3B ADP 500 A 1 HETATM 5 P PA ADP . . . B 2 32.949 74.829 -9.547 1 54.17 ? PA ADP 500 A 1 HETATM 6 O O1A ADP . . . B 2 32.27 76.153 -9.337 1 54.17 ? O1A ADP 500 A 1 HETATM 7 O O2A ADP . . . B 2 32.115 73.627 -9.64 1 54.17 ? O2A ADP 500 A 1 HETATM 8 O O3A ADP . . . B 2 34.041 74.64 -8.351 1 54.17 ? O3A ADP 500 A 1 HETATM 9 O O5' ADP . . . B 2 33.891 74.999 -10.826 1 54.17 ? O5' ADP 500 A 1 HETATM 10 C C5' ADP . . . B 2 34.672 73.873 -11.288 1 54.17 ? C5' ADP 500 A 1 HETATM 11 C C4' ADP . . . B 2 34.127 73.29 -12.575 1 54.17 ? C4' ADP 500 A 1 HETATM 12 O O4' ADP . . . B 2 32.653 73.081 -12.401 1 54.17 ? O4' ADP 500 A 1 HETATM 13 C C3' ADP . . . B 2 34.174 74.185 -13.796 1 54.17 ? C3' ADP 500 A 1 HETATM 14 O O3' ADP . . . B 2 35.47 74.127 -14.434 1 54.17 ? O3' ADP 500 A 1 HETATM 15 C C2' ADP . . . B 2 33.025 73.6 -14.698 1 54.17 ? C2' ADP 500 A 1 HETATM 16 O O2' ADP . . . B 2 33.458 72.388 -15.401 1 54.17 ? O2' ADP 500 A 1 HETATM 17 C C1' ADP . . . B 2 31.962 73.257 -13.656 1 54.17 ? C1' ADP 500 A 1 HETATM 18 N N9 ADP . . . B 2 30.899 74.371 -13.504 1 54.17 ? N9 ADP 500 A 1 HETATM 19 C C8 ADP . . . B 2 30.642 75.098 -12.419 1 54.17 ? C8 ADP 500 A 1 HETATM 20 N N7 ADP . . . B 2 29.697 75.947 -12.594 1 54.17 ? N7 ADP 500 A 1 HETATM 21 C C5 ADP . . . B 2 29.292 75.77 -13.911 1 54.17 ? C5 ADP 500 A 1 HETATM 22 C C6 ADP . . . B 2 28.284 76.379 -14.764 1 54.17 ? C6 ADP 500 A 1 HETATM 23 N N6 ADP . . . B 2 27.443 77.378 -14.338 1 54.17 ? N6 ADP 500 A 1 HETATM 24 N N1 ADP . . . B 2 28.177 75.928 -16.046 1 54.17 ? N1 ADP 500 A 1 HETATM 25 C C2 ADP . . . B 2 28.985 74.956 -16.479 1 54.17 ? C2 ADP 500 A 1 HETATM 26 N N3 ADP . . . B 2 29.943 74.333 -15.765 1 54.17 ? N3 ADP 500 A 1 HETATM 27 C C4 ADP . . . B 2 30.046 74.786 -14.487 1 54.17 ? C4 ADP 500 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #