data_1MO4 # _model_server_result.job_id 0TsLhmUQhJPvvBCJL3s6yg _model_server_result.datetime_utc '2024-11-29 15:40:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1MO4 # _exptl.entry_id 1MO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MO4 _cell.length_a 108.075 _cell.length_b 108.075 _cell.length_c 72.545 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG S1G AGS doub 1 n n PG O2G AGS sing 2 n n PG O3G AGS sing 3 n n PG O3B AGS sing 4 n n PB O1B AGS doub 5 n n PB O2B AGS sing 6 n n PB O3B AGS sing 7 n n PB O3A AGS sing 8 n n PA O1A AGS doub 9 n n PA O2A AGS sing 10 n n PA O3A AGS sing 11 n n PA O5' AGS sing 12 n n O5' C5' AGS sing 13 n n C5' C4' AGS sing 14 n n C4' O4' AGS sing 15 n n C4' C3' AGS sing 16 n n O4' C1' AGS sing 17 n n C3' O3' AGS sing 18 n n C3' C2' AGS sing 19 n n C2' O2' AGS sing 20 n n C2' C1' AGS sing 21 n n C1' N9 AGS sing 22 n n N9 C8 AGS sing 23 n y N9 C4 AGS sing 24 n y C8 N7 AGS doub 25 n y N7 C5 AGS sing 26 n y C5 C6 AGS sing 27 n y C5 C4 AGS doub 28 n y C6 N6 AGS sing 29 n n C6 N1 AGS doub 30 n y N1 C2 AGS sing 31 n y C2 N3 AGS doub 32 n y N3 C4 AGS sing 33 n y O2G HOG2 AGS sing 34 n n O3G H21 AGS sing 35 n n O2B HOB2 AGS sing 36 n n O2A HOA2 AGS sing 37 n n C5' "H5'1" AGS sing 38 n n C5' "H5'2" AGS sing 39 n n C4' H4' AGS sing 40 n n C3' H3' AGS sing 41 n n O3' HO3' AGS sing 42 n n C2' H2' AGS sing 43 n n O2' HO2' AGS sing 44 n n C1' H1' AGS sing 45 n n C8 H8 AGS sing 46 n n N6 HN61 AGS sing 47 n n N6 HN62 AGS sing 48 n n C2 H2 AGS sing 49 n n # _atom_sites.entry_id 1MO4 _atom_sites.fract_transf_matrix[1][1] 0.009253 _atom_sites.fract_transf_matrix[1][2] 0.005342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AGS A 1 500 500 AGS SAP . C 3 HOH A 1 501 330 HOH WAT . C 3 HOH A 2 502 331 HOH WAT . C 3 HOH A 3 503 332 HOH WAT . C 3 HOH A 4 504 333 HOH WAT . C 3 HOH A 5 505 334 HOH WAT . C 3 HOH A 6 506 335 HOH WAT . C 3 HOH A 7 507 336 HOH WAT . C 3 HOH A 8 508 337 HOH WAT . C 3 HOH A 9 509 338 HOH WAT . C 3 HOH A 10 510 339 HOH WAT . C 3 HOH A 11 511 340 HOH WAT . C 3 HOH A 12 512 341 HOH WAT . C 3 HOH A 13 513 342 HOH WAT . C 3 HOH A 14 514 343 HOH WAT . C 3 HOH A 15 515 344 HOH WAT . C 3 HOH A 16 516 345 HOH WAT . C 3 HOH A 17 517 346 HOH WAT . C 3 HOH A 18 518 347 HOH WAT . C 3 HOH A 19 519 348 HOH WAT . C 3 HOH A 20 520 349 HOH WAT . C 3 HOH A 21 521 350 HOH WAT . C 3 HOH A 22 522 351 HOH WAT . C 3 HOH A 23 523 352 HOH WAT . C 3 HOH A 24 524 353 HOH WAT . C 3 HOH A 25 525 355 HOH WAT . C 3 HOH A 26 526 356 HOH WAT . C 3 HOH A 27 527 357 HOH WAT . C 3 HOH A 28 528 358 HOH WAT . C 3 HOH A 29 529 359 HOH WAT . C 3 HOH A 30 530 360 HOH WAT . C 3 HOH A 31 531 361 HOH WAT . C 3 HOH A 32 532 362 HOH WAT . C 3 HOH A 33 533 363 HOH WAT . C 3 HOH A 34 534 364 HOH WAT . C 3 HOH A 35 535 365 HOH WAT . C 3 HOH A 36 536 366 HOH WAT . C 3 HOH A 37 537 367 HOH WAT . C 3 HOH A 38 538 368 HOH WAT . C 3 HOH A 39 539 369 HOH WAT . C 3 HOH A 40 540 370 HOH WAT . C 3 HOH A 41 541 371 HOH WAT . C 3 HOH A 42 542 372 HOH WAT . C 3 HOH A 43 543 373 HOH WAT . C 3 HOH A 44 544 374 HOH WAT . C 3 HOH A 45 545 375 HOH WAT . C 3 HOH A 46 546 376 HOH WAT . C 3 HOH A 47 547 377 HOH WAT . C 3 HOH A 48 548 378 HOH WAT . C 3 HOH A 49 549 379 HOH WAT . C 3 HOH A 50 550 380 HOH WAT . C 3 HOH A 51 551 381 HOH WAT . C 3 HOH A 52 552 382 HOH WAT . C 3 HOH A 53 553 383 HOH WAT . C 3 HOH A 54 554 384 HOH WAT . C 3 HOH A 55 555 385 HOH WAT . C 3 HOH A 56 556 386 HOH WAT . C 3 HOH A 57 557 387 HOH WAT . C 3 HOH A 58 558 388 HOH WAT . C 3 HOH A 59 559 389 HOH WAT . C 3 HOH A 60 560 390 HOH WAT . C 3 HOH A 61 561 391 HOH WAT . C 3 HOH A 62 562 392 HOH WAT . C 3 HOH A 63 563 393 HOH WAT . C 3 HOH A 64 564 394 HOH WAT . C 3 HOH A 65 565 395 HOH WAT . C 3 HOH A 66 566 396 HOH WAT . C 3 HOH A 67 567 397 HOH WAT . C 3 HOH A 68 568 398 HOH WAT . C 3 HOH A 69 569 399 HOH WAT . C 3 HOH A 70 570 400 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . B 2 35.374 77.895 -8.221 1 44.04 ? PG AGS 500 A 1 HETATM 2 S S1G AGS . . . B 2 33.508 78.539 -8.285 1 44.04 ? S1G AGS 500 A 1 HETATM 3 O O2G AGS . . . B 2 36.204 77.553 -6.929 1 44.04 ? O2G AGS 500 A 1 HETATM 4 O O3G AGS . . . B 2 35.871 77.249 -9.493 1 44.04 ? O3G AGS 500 A 1 HETATM 5 P PB AGS . . . B 2 35.19 74.925 -7.648 1 44.04 ? PB AGS 500 A 1 HETATM 6 O O1B AGS . . . B 2 35.708 74.302 -8.879 1 44.04 ? O1B AGS 500 A 1 HETATM 7 O O2B AGS . . . B 2 34.635 74.327 -6.412 1 44.04 ? O2B AGS 500 A 1 HETATM 8 O O3B AGS . . . B 2 34.649 76.413 -7.927 1 44.04 ? O3B AGS 500 A 1 HETATM 9 P PA AGS . . . B 2 32.958 74.735 -9.684 1 44.04 ? PA AGS 500 A 1 HETATM 10 O O1A AGS . . . B 2 33.613 75.81 -10.506 1 44.04 ? O1A AGS 500 A 1 HETATM 11 O O2A AGS . . . B 2 31.531 75.029 -9.316 1 44.04 ? O2A AGS 500 A 1 HETATM 12 O O3A AGS . . . B 2 33.772 74.476 -8.282 1 44.04 ? O3A AGS 500 A 1 HETATM 13 O O5' AGS . . . B 2 33.065 73.28 -10.359 1 44.04 ? O5' AGS 500 A 1 HETATM 14 C C5' AGS . . . B 2 34.081 73.217 -11.368 1 44.04 ? C5' AGS 500 A 1 HETATM 15 C C4' AGS . . . B 2 33.68 72.519 -12.659 1 44.04 ? C4' AGS 500 A 1 HETATM 16 O O4' AGS . . . B 2 32.218 72.473 -12.863 1 44.04 ? O4' AGS 500 A 1 HETATM 17 C C3' AGS . . . B 2 34.259 73.123 -13.943 1 44.04 ? C3' AGS 500 A 1 HETATM 18 O O3' AGS . . . B 2 35.017 72.186 -14.712 1 44.04 ? O3' AGS 500 A 1 HETATM 19 C C2' AGS . . . B 2 33.048 73.745 -14.676 1 44.04 ? C2' AGS 500 A 1 HETATM 20 O O2' AGS . . . B 2 33.043 73.611 -16.079 1 44.04 ? O2' AGS 500 A 1 HETATM 21 C C1' AGS . . . B 2 31.812 73.15 -14.055 1 44.04 ? C1' AGS 500 A 1 HETATM 22 N N9 AGS . . . B 2 30.737 74.187 -13.773 1 44.04 ? N9 AGS 500 A 1 HETATM 23 C C8 AGS . . . B 2 30.552 74.766 -12.537 1 44.04 ? C8 AGS 500 A 1 HETATM 24 N N7 AGS . . . B 2 29.564 75.668 -12.465 1 44.04 ? N7 AGS 500 A 1 HETATM 25 C C5 AGS . . . B 2 29.06 75.691 -13.74 1 44.04 ? C5 AGS 500 A 1 HETATM 26 C C6 AGS . . . B 2 27.989 76.441 -14.38 1 44.04 ? C6 AGS 500 A 1 HETATM 27 N N6 AGS . . . B 2 27.21 77.354 -13.75 1 44.04 ? N6 AGS 500 A 1 HETATM 28 N N1 AGS . . . B 2 27.759 76.198 -15.712 1 44.04 ? N1 AGS 500 A 1 HETATM 29 C C2 AGS . . . B 2 28.525 75.282 -16.387 1 44.04 ? C2 AGS 500 A 1 HETATM 30 N N3 AGS . . . B 2 29.545 74.536 -15.897 1 44.04 ? N3 AGS 500 A 1 HETATM 31 C C4 AGS . . . B 2 29.773 74.779 -14.564 1 44.04 ? C4 AGS 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #