data_1MO6 # _model_server_result.job_id kTQhtncA6_kJMLA3itjk-g _model_server_result.datetime_utc '2025-01-25 23:14:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mo6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1MO6 # _exptl.entry_id 1MO6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MO6 _cell.length_a 108.077 _cell.length_b 108.077 _cell.length_c 72.361 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id DTP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DTP doub 83 n n PG O2G DTP sing 84 n n PG O3G DTP sing 85 n n PG O3B DTP sing 86 n n O2G HOG2 DTP sing 87 n n O3G HOG3 DTP sing 88 n n PB O1B DTP doub 89 n n PB O2B DTP sing 90 n n PB O3B DTP sing 91 n n PB O3A DTP sing 92 n n O2B HOB2 DTP sing 93 n n PA O1A DTP doub 94 n n PA O2A DTP sing 95 n n PA O3A DTP sing 96 n n PA O5' DTP sing 97 n n O2A HOA2 DTP sing 98 n n O5' C5' DTP sing 99 n n C5' C4' DTP sing 100 n n C5' "H5'1" DTP sing 101 n n C5' "H5'2" DTP sing 102 n n C4' O4' DTP sing 103 n n C4' C3' DTP sing 104 n n C4' H4' DTP sing 105 n n O4' C1' DTP sing 106 n n C3' O3' DTP sing 107 n n C3' C2' DTP sing 108 n n C3' H3' DTP sing 109 n n O3' HO3' DTP sing 110 n n C2' C1' DTP sing 111 n n C2' "H2'1" DTP sing 112 n n C2' "H2'2" DTP sing 113 n n C1' N9 DTP sing 114 n n C1' H1' DTP sing 115 n n N9 C8 DTP sing 116 n y N9 C4 DTP sing 117 n y C8 N7 DTP doub 118 n y C8 H8 DTP sing 119 n n N7 C5 DTP sing 120 n y C5 C6 DTP sing 121 n y C5 C4 DTP doub 122 n y C6 N6 DTP sing 123 n n C6 N1 DTP doub 124 n y N6 HN61 DTP sing 125 n n N6 HN62 DTP sing 126 n n N1 C2 DTP sing 127 n y C2 N3 DTP doub 128 n y C2 H2 DTP sing 129 n n N3 C4 DTP sing 130 n y # _atom_sites.entry_id 1MO6 _atom_sites.fract_transf_matrix[1][1] 0.009253 _atom_sites.fract_transf_matrix[1][2] 0.005342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTP A 1 500 500 DTP DTP . C 3 HOH A 1 501 330 HOH WAT . C 3 HOH A 2 502 331 HOH WAT . C 3 HOH A 3 503 332 HOH WAT . C 3 HOH A 4 504 333 HOH WAT . C 3 HOH A 5 505 334 HOH WAT . C 3 HOH A 6 506 335 HOH WAT . C 3 HOH A 7 507 336 HOH WAT . C 3 HOH A 8 508 337 HOH WAT . C 3 HOH A 9 509 338 HOH WAT . C 3 HOH A 10 510 339 HOH WAT . C 3 HOH A 11 511 340 HOH WAT . C 3 HOH A 12 512 341 HOH WAT . C 3 HOH A 13 513 342 HOH WAT . C 3 HOH A 14 514 343 HOH WAT . C 3 HOH A 15 515 344 HOH WAT . C 3 HOH A 16 516 345 HOH WAT . C 3 HOH A 17 517 346 HOH WAT . C 3 HOH A 18 518 347 HOH WAT . C 3 HOH A 19 519 348 HOH WAT . C 3 HOH A 20 520 349 HOH WAT . C 3 HOH A 21 521 350 HOH WAT . C 3 HOH A 22 522 351 HOH WAT . C 3 HOH A 23 523 352 HOH WAT . C 3 HOH A 24 524 353 HOH WAT . C 3 HOH A 25 525 354 HOH WAT . C 3 HOH A 26 526 355 HOH WAT . C 3 HOH A 27 527 356 HOH WAT . C 3 HOH A 28 528 357 HOH WAT . C 3 HOH A 29 529 358 HOH WAT . C 3 HOH A 30 530 359 HOH WAT . C 3 HOH A 31 531 360 HOH WAT . C 3 HOH A 32 532 361 HOH WAT . C 3 HOH A 33 533 362 HOH WAT . C 3 HOH A 34 534 363 HOH WAT . C 3 HOH A 35 535 364 HOH WAT . C 3 HOH A 36 536 365 HOH WAT . C 3 HOH A 37 537 366 HOH WAT . C 3 HOH A 38 538 367 HOH WAT . C 3 HOH A 39 539 368 HOH WAT . C 3 HOH A 40 540 369 HOH WAT . C 3 HOH A 41 541 370 HOH WAT . C 3 HOH A 42 542 371 HOH WAT . C 3 HOH A 43 543 372 HOH WAT . C 3 HOH A 44 544 373 HOH WAT . C 3 HOH A 45 545 374 HOH WAT . C 3 HOH A 46 546 375 HOH WAT . C 3 HOH A 47 547 376 HOH WAT . C 3 HOH A 48 548 377 HOH WAT . C 3 HOH A 49 549 378 HOH WAT . C 3 HOH A 50 550 379 HOH WAT . C 3 HOH A 51 551 380 HOH WAT . C 3 HOH A 52 552 381 HOH WAT . C 3 HOH A 53 553 382 HOH WAT . C 3 HOH A 54 554 383 HOH WAT . C 3 HOH A 55 555 384 HOH WAT . C 3 HOH A 56 556 385 HOH WAT . C 3 HOH A 57 557 386 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DTP . . . B 2 34.944 78.234 -8.578 1 23.69 ? PG DTP 500 A 1 HETATM 2 O O1G DTP . . . B 2 33.621 78.516 -7.94 1 23.69 ? O1G DTP 500 A 1 HETATM 3 O O2G DTP . . . B 2 35.874 78.99 -7.852 1 23.69 ? O2G DTP 500 A 1 HETATM 4 O O3G DTP . . . B 2 34.95 78.618 -10.103 1 23.69 ? O3G DTP 500 A 1 HETATM 5 P PB DTP . . . B 2 34.978 75.299 -7.661 1 23.69 ? PB DTP 500 A 1 HETATM 6 O O1B DTP . . . B 2 33.667 75.615 -6.992 1 23.69 ? O1B DTP 500 A 1 HETATM 7 O O2B DTP . . . B 2 36.039 74.693 -6.985 1 23.69 ? O2B DTP 500 A 1 HETATM 8 O O3B DTP . . . B 2 35.523 76.633 -8.389 1 23.69 ? O3B DTP 500 A 1 HETATM 9 P PA DTP . . . B 2 33.144 74.048 -9.485 1 23.69 ? PA DTP 500 A 1 HETATM 10 O O1A DTP . . . B 2 32.594 73.208 -8.413 1 23.69 ? O1A DTP 500 A 1 HETATM 11 O O2A DTP . . . B 2 32.302 75.142 -9.912 1 23.69 ? O2A DTP 500 A 1 HETATM 12 O O3A DTP . . . B 2 34.608 74.438 -8.939 1 23.69 ? O3A DTP 500 A 1 HETATM 13 O O5' DTP . . . B 2 33.469 73.216 -10.657 1 23.69 ? O5' DTP 500 A 1 HETATM 14 C C5' DTP . . . B 2 34.062 73.799 -11.831 1 23.69 ? C5' DTP 500 A 1 HETATM 15 C C4' DTP . . . B 2 33.793 73.093 -13.139 1 23.69 ? C4' DTP 500 A 1 HETATM 16 O O4' DTP . . . B 2 32.375 72.868 -13.307 1 23.69 ? O4' DTP 500 A 1 HETATM 17 C C3' DTP . . . B 2 34.257 73.875 -14.334 1 23.69 ? C3' DTP 500 A 1 HETATM 18 O O3' DTP . . . B 2 35.272 73.16 -15.005 1 23.69 ? O3' DTP 500 A 1 HETATM 19 C C2' DTP . . . B 2 33.026 74.135 -15.19 1 23.69 ? C2' DTP 500 A 1 HETATM 20 C C1' DTP . . . B 2 31.867 73.464 -14.473 1 23.69 ? C1' DTP 500 A 1 HETATM 21 N N9 DTP . . . B 2 30.836 74.427 -14.055 1 23.69 ? N9 DTP 500 A 1 HETATM 22 C C8 DTP . . . B 2 30.582 75.206 -12.969 1 23.69 ? C8 DTP 500 A 1 HETATM 23 N N7 DTP . . . B 2 29.5 75.932 -13.065 1 23.69 ? N7 DTP 500 A 1 HETATM 24 C C5 DTP . . . B 2 29.002 75.616 -14.295 1 23.69 ? C5 DTP 500 A 1 HETATM 25 C C6 DTP . . . B 2 27.838 76.056 -15.025 1 23.69 ? C6 DTP 500 A 1 HETATM 26 N N6 DTP . . . B 2 26.972 76.944 -14.555 1 23.69 ? N6 DTP 500 A 1 HETATM 27 N N1 DTP . . . B 2 27.613 75.528 -16.279 1 23.69 ? N1 DTP 500 A 1 HETATM 28 C C2 DTP . . . B 2 28.489 74.619 -16.778 1 23.69 ? C2 DTP 500 A 1 HETATM 29 N N3 DTP . . . B 2 29.606 74.142 -16.178 1 23.69 ? N3 DTP 500 A 1 HETATM 30 C C4 DTP . . . B 2 29.804 74.685 -14.932 1 23.69 ? C4 DTP 500 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #