data_1MOG # _model_server_result.job_id UIjznwyoBfng6x3u_klJKA _model_server_result.datetime_utc '2024-11-24 16:06:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":200}' # _entry.id 1MOG # _exptl.entry_id 1MOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.364 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MOG _cell.length_a 141.89 _cell.length_b 141.89 _cell.length_c 141.89 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 5 'crystal symmetry operation' 31_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 36_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 7 'crystal symmetry operation' 52_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 54_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 59_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 10 'crystal symmetry operation' 75_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 11 'crystal symmetry operation' 80_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 12 'crystal symmetry operation' 82_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 13 A GLU 14 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A OD2 ASP 40 A ASP 41 80_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 B MG MG . A MG 201 1_555 H O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc4 B MG MG . A MG 201 1_555 H O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 B MG MG . A MG 201 1_555 H O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc6 B MG MG . A MG 201 1_555 H O HOH . A HOH 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc7 B MG MG . A MG 201 1_555 H O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc8 C MG MG . A MG 202 1_555 H O HOH . A HOH 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc9 C MG MG . A MG 202 1_555 H O HOH . A HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc10 C MG MG . A MG 202 1_555 H O HOH . A HOH 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 C MG MG . A MG 202 1_555 H O HOH . A HOH 289 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc12 C MG MG . A MG 202 1_555 H O HOH . A HOH 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc13 D NA NA . A NA 203 1_555 H O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc14 D NA NA . A NA 203 1_555 H O HOH . A HOH 220 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc15 D NA NA . A NA 203 1_555 H O HOH . A HOH 220 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc16 D NA NA . A NA 203 1_555 H O HOH . A HOH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc17 D NA NA . A NA 203 1_555 H O HOH . A HOH 222 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc18 D NA NA . A NA 203 1_555 H O HOH . A HOH 222 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? # _chem_comp.formula 'C17 H20 N4 O6' _chem_comp.formula_weight 376.364 _chem_comp.id RBF _chem_comp.mon_nstd_flag . _chem_comp.name RIBOFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVINE;VITAMIN B2' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 RBF sing 207 n n N1 C10 RBF doub 208 n n C2 O2 RBF doub 209 n n C2 N3 RBF sing 210 n n N3 C4 RBF sing 211 n n N3 HN3 RBF sing 212 n n C4 O4 RBF doub 213 n n C4 C4A RBF sing 214 n n C4A N5 RBF doub 215 n n C4A C10 RBF sing 216 n n N5 C5A RBF sing 217 n n C5A C6 RBF doub 218 n y C5A C9A RBF sing 219 n y C6 C7 RBF sing 220 n y C6 HC6 RBF sing 221 n n C7 C7M RBF sing 222 n n C7 C8 RBF doub 223 n y C7M HC71 RBF sing 224 n n C7M HC72 RBF sing 225 n n C7M HC73 RBF sing 226 n n C8 C8M RBF sing 227 n n C8 C9 RBF sing 228 n y C8M HC81 RBF sing 229 n n C8M HC82 RBF sing 230 n n C8M HC83 RBF sing 231 n n C9 C9A RBF doub 232 n y C9 HC9 RBF sing 233 n n C9A N10 RBF sing 234 n n N10 C10 RBF sing 235 n n N10 C1' RBF sing 236 n n C1' C2' RBF sing 237 n n C1' HC11 RBF sing 238 n n C1' HC12 RBF sing 239 n n C2' O2' RBF sing 240 n n C2' C3' RBF sing 241 n n C2' HC2' RBF sing 242 n n O2' HO2' RBF sing 243 n n C3' O3' RBF sing 244 n n C3' C4' RBF sing 245 n n C3' HC3' RBF sing 246 n n O3' HO3' RBF sing 247 n n C4' O4' RBF sing 248 n n C4' C5' RBF sing 249 n n C4' HC4' RBF sing 250 n n O4' HO4' RBF sing 251 n n C5' O5' RBF sing 252 n n C5' HC51 RBF sing 253 n n C5' HC52 RBF sing 254 n n O5' HO5' RBF sing 255 n n # _atom_sites.entry_id 1MOG _atom_sites.fract_transf_matrix[1][1] 0.007048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 1 MG MG2 . C 2 MG A 1 202 2 MG MG2 . D 3 NA A 1 203 3 NA NA1 . E 4 CL A 1 204 4 CL CL1 . F 4 CL A 1 205 5 CL CL1 . G 5 RBF A 1 200 100 RBF RIB . H 6 HOH A 1 206 6 HOH HOH . H 6 HOH A 2 207 7 HOH HOH . H 6 HOH A 3 208 8 HOH HOH . H 6 HOH A 4 209 9 HOH HOH . H 6 HOH A 5 210 10 HOH HOH . H 6 HOH A 6 211 11 HOH HOH . H 6 HOH A 7 212 12 HOH HOH . H 6 HOH A 8 213 13 HOH HOH . H 6 HOH A 9 214 14 HOH HOH . H 6 HOH A 10 215 15 HOH HOH . H 6 HOH A 11 216 16 HOH HOH . H 6 HOH A 12 217 17 HOH HOH . H 6 HOH A 13 218 18 HOH HOH . H 6 HOH A 14 219 19 HOH HOH . H 6 HOH A 15 220 20 HOH HOH . H 6 HOH A 16 221 21 HOH HOH . H 6 HOH A 17 222 22 HOH HOH . H 6 HOH A 18 223 23 HOH HOH . H 6 HOH A 19 224 24 HOH HOH . H 6 HOH A 20 225 25 HOH HOH . H 6 HOH A 21 226 26 HOH HOH . H 6 HOH A 22 227 27 HOH HOH . H 6 HOH A 23 228 28 HOH HOH . H 6 HOH A 24 229 29 HOH HOH . H 6 HOH A 25 230 30 HOH HOH . H 6 HOH A 26 231 31 HOH HOH . H 6 HOH A 27 232 32 HOH HOH . H 6 HOH A 28 233 33 HOH HOH . H 6 HOH A 29 234 34 HOH HOH . H 6 HOH A 30 235 35 HOH HOH . H 6 HOH A 31 236 36 HOH HOH . H 6 HOH A 32 237 37 HOH HOH . H 6 HOH A 33 238 38 HOH HOH . H 6 HOH A 34 239 39 HOH HOH . H 6 HOH A 35 240 40 HOH HOH . H 6 HOH A 36 241 41 HOH HOH . H 6 HOH A 37 242 42 HOH HOH . H 6 HOH A 38 243 43 HOH HOH . H 6 HOH A 39 244 44 HOH HOH . H 6 HOH A 40 245 45 HOH HOH . H 6 HOH A 41 246 46 HOH HOH . H 6 HOH A 42 247 47 HOH HOH . H 6 HOH A 43 248 48 HOH HOH . H 6 HOH A 44 249 49 HOH HOH . H 6 HOH A 45 250 50 HOH HOH . H 6 HOH A 46 251 51 HOH HOH . H 6 HOH A 47 252 52 HOH HOH . H 6 HOH A 48 253 53 HOH HOH . H 6 HOH A 49 254 54 HOH HOH . H 6 HOH A 50 255 55 HOH HOH . H 6 HOH A 51 256 56 HOH HOH . H 6 HOH A 52 257 57 HOH HOH . H 6 HOH A 53 258 58 HOH HOH . H 6 HOH A 54 259 59 HOH HOH . H 6 HOH A 55 260 60 HOH HOH . H 6 HOH A 56 261 61 HOH HOH . H 6 HOH A 57 262 62 HOH HOH . H 6 HOH A 58 263 63 HOH HOH . H 6 HOH A 59 264 64 HOH HOH . H 6 HOH A 60 265 65 HOH HOH . H 6 HOH A 61 266 66 HOH HOH . H 6 HOH A 62 267 67 HOH HOH . H 6 HOH A 63 268 68 HOH HOH . H 6 HOH A 64 269 69 HOH HOH . H 6 HOH A 65 270 70 HOH HOH . H 6 HOH A 66 271 71 HOH HOH . H 6 HOH A 67 272 72 HOH HOH . H 6 HOH A 68 273 73 HOH HOH . H 6 HOH A 69 274 74 HOH HOH . H 6 HOH A 70 275 75 HOH HOH . H 6 HOH A 71 276 76 HOH HOH . H 6 HOH A 72 277 77 HOH HOH . H 6 HOH A 73 278 78 HOH HOH . H 6 HOH A 74 279 79 HOH HOH . H 6 HOH A 75 280 80 HOH HOH . H 6 HOH A 76 281 81 HOH HOH . H 6 HOH A 77 282 82 HOH HOH . H 6 HOH A 78 283 83 HOH HOH . H 6 HOH A 79 284 84 HOH HOH . H 6 HOH A 80 285 85 HOH HOH . H 6 HOH A 81 286 86 HOH HOH . H 6 HOH A 82 287 87 HOH HOH . H 6 HOH A 83 288 88 HOH HOH . H 6 HOH A 84 289 89 HOH HOH . H 6 HOH A 85 290 90 HOH HOH . H 6 HOH A 86 291 91 HOH HOH . H 6 HOH A 87 292 92 HOH HOH . H 6 HOH A 88 293 93 HOH HOH . H 6 HOH A 89 294 94 HOH HOH . H 6 HOH A 90 295 95 HOH HOH . H 6 HOH A 91 296 96 HOH HOH . H 6 HOH A 92 297 97 HOH HOH . H 6 HOH A 93 298 98 HOH HOH . H 6 HOH A 94 299 99 HOH HOH . H 6 HOH A 95 300 100 HOH HOH . H 6 HOH A 96 301 101 HOH HOH . H 6 HOH A 97 302 102 HOH HOH . H 6 HOH A 98 303 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBF . . . G 5 0.198 22.483 -2.75 1 31.28 ? N1 RBF 200 A 1 HETATM 2 C C2 RBF . . . G 5 -0.447 22.154 -3.844 1 29.86 ? C2 RBF 200 A 1 HETATM 3 O O2 RBF . . . G 5 -0.926 22.993 -4.575 1 33.66 ? O2 RBF 200 A 1 HETATM 4 N N3 RBF . . . G 5 -0.621 20.781 -4.217 1 31.55 ? N3 RBF 200 A 1 HETATM 5 C C4 RBF . . . G 5 -0.13 19.737 -3.454 1 29.3 ? C4 RBF 200 A 1 HETATM 6 O O4 RBF . . . G 5 -0.311 18.65 -3.803 1 31.29 ? O4 RBF 200 A 1 HETATM 7 C C4A RBF . . . G 5 0.603 20.078 -2.243 1 29.72 ? C4A RBF 200 A 1 HETATM 8 N N5 RBF . . . G 5 1.121 19.103 -1.45 1 28.87 ? N5 RBF 200 A 1 HETATM 9 C C5A RBF . . . G 5 1.808 19.501 -0.345 1 29.87 ? C5A RBF 200 A 1 HETATM 10 C C6 RBF . . . G 5 2.378 18.481 0.475 1 31.38 ? C6 RBF 200 A 1 HETATM 11 C C7 RBF . . . G 5 3.108 18.801 1.611 1 30.5 ? C7 RBF 200 A 1 HETATM 12 C C7M RBF . . . G 5 3.719 17.705 2.456 1 29.38 ? C7M RBF 200 A 1 HETATM 13 C C8 RBF . . . G 5 3.294 20.193 1.99 1 31.29 ? C8 RBF 200 A 1 HETATM 14 C C8M RBF . . . G 5 4.086 20.569 3.207 1 31.07 ? C8M RBF 200 A 1 HETATM 15 C C9 RBF . . . G 5 2.726 21.227 1.204 1 30.93 ? C9 RBF 200 A 1 HETATM 16 C C9A RBF . . . G 5 1.991 20.893 0.036 1 31.67 ? C9A RBF 200 A 1 HETATM 17 N N10 RBF . . . G 5 1.394 21.865 -0.821 1 33.44 ? N10 RBF 200 A 1 HETATM 18 C C10 RBF . . . G 5 0.736 21.498 -1.932 1 29.36 ? C10 RBF 200 A 1 HETATM 19 C C1' RBF . . . G 5 1.453 23.341 -0.51 1 41.02 ? C1' RBF 200 A 1 HETATM 20 C C2' RBF . . . G 5 2.478 24.201 -1.27 1 45.54 ? C2' RBF 200 A 1 HETATM 21 O O2' RBF . . . G 5 3.662 24.086 -0.545 1 43.41 ? O2' RBF 200 A 1 HETATM 22 C C3' RBF . . . G 5 2.003 25.672 -1.246 1 49.04 ? C3' RBF 200 A 1 HETATM 23 O O3' RBF . . . G 5 1.852 26.108 0.099 1 53.83 ? O3' RBF 200 A 1 HETATM 24 C C4' RBF . . . G 5 0.628 25.765 -1.965 1 51.37 ? C4' RBF 200 A 1 HETATM 25 O O4' RBF . . . G 5 0.754 25.26 -3.329 1 55.23 ? O4' RBF 200 A 1 HETATM 26 C C5' RBF . . . G 5 0.14 27.227 -1.988 1 54.34 ? C5' RBF 200 A 1 HETATM 27 O O5' RBF . . . G 5 -1.285 27.256 -2.769 1 57.53 ? O5' RBF 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #