data_1MOS # _model_server_result.job_id 0cC_zvMGBTwiibqidTNbrw _model_server_result.datetime_utc '2024-11-27 18:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":609}' # _entry.id 1MOS # _exptl.entry_id 1MOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 261.167 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MOS _cell.length_a 143.9 _cell.length_b 143.9 _cell.length_c 172.8 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PQS hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 2 1,3,4,2,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O HOH . A HOH 22 1_555 E NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc2 H O HOH . A HOH 23 1_555 E NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc3 H O HOH . A HOH 26 1_555 E NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 H O HOH . A HOH 73 1_555 E NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc5 G O3S MES . A MES 610 1_555 E NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'C6 H16 N O8 P' _chem_comp.formula_weight 261.167 _chem_comp.id AGP _chem_comp.mon_nstd_flag . _chem_comp.name '2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AGP sing 1 n n C1 C2 AGP sing 2 n n C1 H11 AGP sing 3 n n C1 H12 AGP sing 4 n n O1 HO1 AGP sing 5 n n C2 N2 AGP sing 6 n n C2 C3 AGP sing 7 n n C2 H2 AGP sing 8 n n N2 HN21 AGP sing 9 n n N2 HN22 AGP sing 10 n n C3 O3 AGP sing 11 n n C3 C4 AGP sing 12 n n C3 H3 AGP sing 13 n n O3 HO3 AGP sing 14 n n C4 O4 AGP sing 15 n n C4 C5 AGP sing 16 n n C4 H4 AGP sing 17 n n O4 HO4 AGP sing 18 n n C5 O5 AGP sing 19 n n C5 C6 AGP sing 20 n n C5 H5 AGP sing 21 n n O5 HO5 AGP sing 22 n n C6 O6 AGP sing 23 n n C6 H61 AGP sing 24 n n C6 H62 AGP sing 25 n n O6 P AGP sing 26 n n P O1P AGP doub 27 n n P O2P AGP sing 28 n n P O3P AGP sing 29 n n O2P HOP2 AGP sing 30 n n O3P HOP3 AGP sing 31 n n # _atom_sites.entry_id 1MOS _atom_sites.fract_transf_matrix[1][1] 0.006949 _atom_sites.fract_transf_matrix[1][2] 0.004012 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 611 611 SO4 SO4 . C 2 SO4 A 1 612 612 SO4 SO4 . D 2 SO4 A 1 613 613 SO4 SO4 . E 3 NA A 1 614 614 NA NA . F 4 AGP A 1 609 609 AGP AGP . G 5 MES A 1 610 610 MES MES . H 6 HOH A 1 1 1 HOH HOH . H 6 HOH A 2 2 2 HOH HOH . H 6 HOH A 3 3 3 HOH HOH . H 6 HOH A 4 4 4 HOH HOH . H 6 HOH A 5 5 5 HOH HOH . H 6 HOH A 6 6 6 HOH HOH . H 6 HOH A 7 7 7 HOH HOH . H 6 HOH A 8 8 8 HOH HOH . H 6 HOH A 9 9 9 HOH HOH . H 6 HOH A 10 10 10 HOH HOH . H 6 HOH A 11 11 11 HOH HOH . H 6 HOH A 12 12 12 HOH HOH . H 6 HOH A 13 13 13 HOH HOH . H 6 HOH A 14 14 14 HOH HOH . H 6 HOH A 15 15 15 HOH HOH . H 6 HOH A 16 16 16 HOH HOH . H 6 HOH A 17 17 17 HOH HOH . H 6 HOH A 18 18 18 HOH HOH . H 6 HOH A 19 19 19 HOH HOH . H 6 HOH A 20 20 20 HOH HOH . H 6 HOH A 21 21 21 HOH HOH . H 6 HOH A 22 22 22 HOH HOH . H 6 HOH A 23 23 23 HOH HOH . H 6 HOH A 24 24 24 HOH HOH . H 6 HOH A 25 25 25 HOH HOH . H 6 HOH A 26 26 26 HOH HOH . H 6 HOH A 27 27 27 HOH HOH . H 6 HOH A 28 28 28 HOH HOH . H 6 HOH A 29 29 29 HOH HOH . H 6 HOH A 30 30 30 HOH HOH . H 6 HOH A 31 31 31 HOH HOH . H 6 HOH A 32 32 32 HOH HOH . H 6 HOH A 33 33 33 HOH HOH . H 6 HOH A 34 34 34 HOH HOH . H 6 HOH A 35 35 35 HOH HOH . H 6 HOH A 36 36 36 HOH HOH . H 6 HOH A 37 37 37 HOH HOH . H 6 HOH A 38 38 38 HOH HOH . H 6 HOH A 39 39 39 HOH HOH . H 6 HOH A 40 40 40 HOH HOH . H 6 HOH A 41 41 41 HOH HOH . H 6 HOH A 42 42 42 HOH HOH . H 6 HOH A 43 43 43 HOH HOH . H 6 HOH A 44 44 44 HOH HOH . H 6 HOH A 45 45 45 HOH HOH . H 6 HOH A 46 46 46 HOH HOH . H 6 HOH A 47 47 47 HOH HOH . H 6 HOH A 48 48 48 HOH HOH . H 6 HOH A 49 49 49 HOH HOH . H 6 HOH A 50 50 50 HOH HOH . H 6 HOH A 51 51 51 HOH HOH . H 6 HOH A 52 52 52 HOH HOH . H 6 HOH A 53 53 53 HOH HOH . H 6 HOH A 54 54 54 HOH HOH . H 6 HOH A 55 55 55 HOH HOH . H 6 HOH A 56 56 56 HOH HOH . H 6 HOH A 57 57 57 HOH HOH . H 6 HOH A 58 58 58 HOH HOH . H 6 HOH A 59 59 59 HOH HOH . H 6 HOH A 60 60 60 HOH HOH . H 6 HOH A 61 61 61 HOH HOH . H 6 HOH A 62 62 62 HOH HOH . H 6 HOH A 63 63 63 HOH HOH . H 6 HOH A 64 64 64 HOH HOH . H 6 HOH A 65 65 65 HOH HOH . H 6 HOH A 66 66 66 HOH HOH . H 6 HOH A 67 67 67 HOH HOH . H 6 HOH A 68 68 68 HOH HOH . H 6 HOH A 69 69 69 HOH HOH . H 6 HOH A 70 70 70 HOH HOH . H 6 HOH A 71 71 71 HOH HOH . H 6 HOH A 72 72 72 HOH HOH . H 6 HOH A 73 73 73 HOH HOH . H 6 HOH A 74 74 74 HOH HOH . H 6 HOH A 75 75 75 HOH HOH . H 6 HOH A 76 76 76 HOH HOH . H 6 HOH A 77 77 77 HOH HOH . H 6 HOH A 78 78 78 HOH HOH . H 6 HOH A 79 79 79 HOH HOH . H 6 HOH A 80 80 80 HOH HOH . H 6 HOH A 81 81 81 HOH HOH . H 6 HOH A 82 82 82 HOH HOH . H 6 HOH A 83 83 83 HOH HOH . H 6 HOH A 84 84 84 HOH HOH . H 6 HOH A 85 85 85 HOH HOH . H 6 HOH A 86 86 86 HOH HOH . H 6 HOH A 87 87 87 HOH HOH . H 6 HOH A 88 88 88 HOH HOH . H 6 HOH A 89 89 89 HOH HOH . H 6 HOH A 90 90 90 HOH HOH . H 6 HOH A 91 91 91 HOH HOH . H 6 HOH A 92 92 92 HOH HOH . H 6 HOH A 93 93 93 HOH HOH . H 6 HOH A 94 94 94 HOH HOH . H 6 HOH A 95 95 95 HOH HOH . H 6 HOH A 96 96 96 HOH HOH . H 6 HOH A 97 97 97 HOH HOH . H 6 HOH A 98 98 98 HOH HOH . H 6 HOH A 99 99 99 HOH HOH . H 6 HOH A 100 100 100 HOH HOH . H 6 HOH A 101 101 101 HOH HOH . H 6 HOH A 102 102 102 HOH HOH . H 6 HOH A 103 103 103 HOH HOH . H 6 HOH A 104 104 104 HOH HOH . H 6 HOH A 105 105 105 HOH HOH . H 6 HOH A 106 106 106 HOH HOH . H 6 HOH A 107 107 107 HOH HOH . H 6 HOH A 108 108 108 HOH HOH . H 6 HOH A 109 109 109 HOH HOH . H 6 HOH A 110 110 110 HOH HOH . H 6 HOH A 111 111 111 HOH HOH . H 6 HOH A 112 112 112 HOH HOH . H 6 HOH A 113 113 113 HOH HOH . H 6 HOH A 114 114 114 HOH HOH . H 6 HOH A 115 115 115 HOH HOH . H 6 HOH A 116 116 116 HOH HOH . H 6 HOH A 117 117 117 HOH HOH . H 6 HOH A 118 118 118 HOH HOH . H 6 HOH A 119 119 119 HOH HOH . H 6 HOH A 120 120 120 HOH HOH . H 6 HOH A 121 121 121 HOH HOH . H 6 HOH A 122 122 122 HOH HOH . H 6 HOH A 123 123 123 HOH HOH . H 6 HOH A 124 124 124 HOH HOH . H 6 HOH A 125 125 125 HOH HOH . H 6 HOH A 126 126 126 HOH HOH . H 6 HOH A 127 127 127 HOH HOH . H 6 HOH A 128 128 128 HOH HOH . H 6 HOH A 129 129 129 HOH HOH . H 6 HOH A 130 130 130 HOH HOH . H 6 HOH A 131 131 131 HOH HOH . H 6 HOH A 132 132 132 HOH HOH . H 6 HOH A 133 133 133 HOH HOH . H 6 HOH A 134 134 134 HOH HOH . H 6 HOH A 135 135 135 HOH HOH . H 6 HOH A 136 136 136 HOH HOH . H 6 HOH A 137 137 137 HOH HOH . H 6 HOH A 138 138 138 HOH HOH . H 6 HOH A 139 139 139 HOH HOH . H 6 HOH A 140 140 140 HOH HOH . H 6 HOH A 141 141 141 HOH HOH . H 6 HOH A 142 142 142 HOH HOH . H 6 HOH A 143 143 143 HOH HOH . H 6 HOH A 144 144 144 HOH HOH . H 6 HOH A 145 145 145 HOH HOH . H 6 HOH A 146 146 146 HOH HOH . H 6 HOH A 147 147 147 HOH HOH . H 6 HOH A 148 148 148 HOH HOH . H 6 HOH A 149 149 149 HOH HOH . H 6 HOH A 150 150 150 HOH HOH . H 6 HOH A 151 151 151 HOH HOH . H 6 HOH A 152 152 152 HOH HOH . H 6 HOH A 153 153 153 HOH HOH . H 6 HOH A 154 154 154 HOH HOH . H 6 HOH A 155 155 155 HOH HOH . H 6 HOH A 156 156 156 HOH HOH . H 6 HOH A 157 157 157 HOH HOH . H 6 HOH A 158 158 158 HOH HOH . H 6 HOH A 159 159 159 HOH HOH . H 6 HOH A 160 160 160 HOH HOH . H 6 HOH A 161 161 161 HOH HOH . H 6 HOH A 162 162 162 HOH HOH . H 6 HOH A 163 163 163 HOH HOH . H 6 HOH A 164 164 164 HOH HOH . H 6 HOH A 165 165 165 HOH HOH . H 6 HOH A 166 166 166 HOH HOH . H 6 HOH A 167 167 167 HOH HOH . H 6 HOH A 168 168 168 HOH HOH . H 6 HOH A 169 169 169 HOH HOH . H 6 HOH A 170 170 170 HOH HOH . H 6 HOH A 171 171 171 HOH HOH . H 6 HOH A 172 172 172 HOH HOH . H 6 HOH A 173 173 173 HOH HOH . H 6 HOH A 174 174 174 HOH HOH . H 6 HOH A 175 175 175 HOH HOH . H 6 HOH A 176 176 176 HOH HOH . H 6 HOH A 177 177 177 HOH HOH . H 6 HOH A 178 178 178 HOH HOH . H 6 HOH A 179 179 179 HOH HOH . H 6 HOH A 180 180 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AGP . . . F 4 27.32 16.336 0.004 1 50.18 ? C1 AGP 609 A 1 HETATM 2 O O1 AGP . . . F 4 26.933 15.368 0.979 1 35.95 ? O1 AGP 609 A 1 HETATM 3 C C2 AGP . . . F 4 27.27 15.766 -1.401 1 40.24 ? C2 AGP 609 A 1 HETATM 4 N N2 AGP . . . F 4 28.399 14.931 -1.604 1 38.85 ? N2 AGP 609 A 1 HETATM 5 C C3 AGP . . . F 4 27.262 16.867 -2.445 1 32.8 ? C3 AGP 609 A 1 HETATM 6 O O3 AGP . . . F 4 26.112 17.702 -2.269 1 34.81 ? O3 AGP 609 A 1 HETATM 7 C C4 AGP . . . F 4 28.46 17.809 -2.368 1 28.94 ? C4 AGP 609 A 1 HETATM 8 O O4 AGP . . . F 4 28.285 18.655 -1.227 1 32.15 ? O4 AGP 609 A 1 HETATM 9 C C5 AGP . . . F 4 28.44 18.792 -3.573 1 32.52 ? C5 AGP 609 A 1 HETATM 10 O O5 AGP . . . F 4 28.734 18.08 -4.745 1 37.67 ? O5 AGP 609 A 1 HETATM 11 C C6 AGP . . . F 4 29.508 19.841 -3.394 1 26.71 ? C6 AGP 609 A 1 HETATM 12 O O6 AGP . . . F 4 30.783 19.141 -3.494 1 28.45 ? O6 AGP 609 A 1 HETATM 13 P P AGP . . . F 4 32.131 19.881 -3.074 1 32.92 ? P AGP 609 A 1 HETATM 14 O O1P AGP . . . F 4 33.229 18.956 -3.276 1 25.74 ? O1P AGP 609 A 1 HETATM 15 O O2P AGP . . . F 4 32.299 21.176 -3.812 1 31.76 ? O2P AGP 609 A 1 HETATM 16 O O3P AGP . . . F 4 32.048 20.314 -1.638 1 37.51 ? O3P AGP 609 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #