data_1MOZ # _model_server_result.job_id UZ2qRjIwIJli4jd2mE2foQ _model_server_result.datetime_utc '2025-02-27 13:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1moz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":184}' # _entry.id 1MOZ # _exptl.entry_id 1MOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MOZ _cell.length_a 104.25 _cell.length_b 104.25 _cell.length_c 45.69 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 81 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 81 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 81 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 81 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.017 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 1MOZ _atom_sites.fract_transf_matrix[1][1] 0.009592 _atom_sites.fract_transf_matrix[1][2] 0.005538 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 184 1 GDP GDP . D 2 GDP B 1 201 1 GDP GDP . E 3 HOH A 1 185 1 HOH TIP . E 3 HOH A 2 186 2 HOH TIP . E 3 HOH A 3 187 3 HOH TIP . E 3 HOH A 4 188 4 HOH TIP . E 3 HOH A 5 189 5 HOH TIP . E 3 HOH A 6 190 6 HOH TIP . E 3 HOH A 7 191 8 HOH TIP . F 3 HOH B 1 202 7 HOH TIP . F 3 HOH B 2 203 11 HOH TIP . F 3 HOH B 3 204 12 HOH TIP . F 3 HOH B 4 205 13 HOH TIP . F 3 HOH B 5 206 14 HOH TIP . F 3 HOH B 6 207 15 HOH TIP . F 3 HOH B 7 208 16 HOH TIP . F 3 HOH B 8 209 17 HOH TIP . F 3 HOH B 9 210 18 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . C 2 25.505 59.61 17.155 1 43.88 ? PB GDP 184 A 1 HETATM 2 O O1B GDP . . . C 2 26.71 60.305 16.752 1 45.14 ? O1B GDP 184 A 1 HETATM 3 O O2B GDP . . . C 2 24.276 60.359 17.235 1 44.83 ? O2B GDP 184 A 1 HETATM 4 O O3B GDP . . . C 2 25.762 58.86 18.483 1 38.21 ? O3B GDP 184 A 1 HETATM 5 O O3A GDP . . . C 2 25.269 58.42 16.127 1 41.39 ? O3A GDP 184 A 1 HETATM 6 P PA GDP . . . C 2 23.965 58.038 15.265 1 40.77 ? PA GDP 184 A 1 HETATM 7 O O1A GDP . . . C 2 22.781 57.918 16.153 1 39.22 ? O1A GDP 184 A 1 HETATM 8 O O2A GDP . . . C 2 23.908 58.913 14.096 1 40.93 ? O2A GDP 184 A 1 HETATM 9 O O5' GDP . . . C 2 24.425 56.527 14.797 1 41.12 ? O5' GDP 184 A 1 HETATM 10 C C5' GDP . . . C 2 25.606 56.327 13.973 1 40.64 ? C5' GDP 184 A 1 HETATM 11 C C4' GDP . . . C 2 25.395 55.213 12.93 1 38.08 ? C4' GDP 184 A 1 HETATM 12 O O4' GDP . . . C 2 25.186 53.992 13.629 1 38 ? O4' GDP 184 A 1 HETATM 13 C C3' GDP . . . C 2 24.186 55.405 12.056 1 36.72 ? C3' GDP 184 A 1 HETATM 14 O O3' GDP . . . C 2 24.528 55.193 10.698 1 33.94 ? O3' GDP 184 A 1 HETATM 15 C C2' GDP . . . C 2 23.115 54.434 12.586 1 36.26 ? C2' GDP 184 A 1 HETATM 16 O O2' GDP . . . C 2 22.233 53.863 11.616 1 39.72 ? O2' GDP 184 A 1 HETATM 17 C C1' GDP . . . C 2 23.943 53.382 13.275 1 36.53 ? C1' GDP 184 A 1 HETATM 18 N N9 GDP . . . C 2 23.352 52.882 14.524 1 36.62 ? N9 GDP 184 A 1 HETATM 19 C C8 GDP . . . C 2 22.96 53.554 15.644 1 39.59 ? C8 GDP 184 A 1 HETATM 20 N N7 GDP . . . C 2 22.479 52.833 16.601 1 39.14 ? N7 GDP 184 A 1 HETATM 21 C C5 GDP . . . C 2 22.562 51.55 16.091 1 37.64 ? C5 GDP 184 A 1 HETATM 22 C C6 GDP . . . C 2 22.19 50.295 16.696 1 36.97 ? C6 GDP 184 A 1 HETATM 23 O O6 GDP . . . C 2 21.716 50.113 17.812 1 38.22 ? O6 GDP 184 A 1 HETATM 24 N N1 GDP . . . C 2 22.42 49.194 15.83 1 38.35 ? N1 GDP 184 A 1 HETATM 25 C C2 GDP . . . C 2 22.965 49.277 14.54 1 39.62 ? C2 GDP 184 A 1 HETATM 26 N N2 GDP . . . C 2 23.106 48.124 13.859 1 39.24 ? N2 GDP 184 A 1 HETATM 27 N N3 GDP . . . C 2 23.315 50.471 13.972 1 40.31 ? N3 GDP 184 A 1 HETATM 28 C C4 GDP . . . C 2 23.097 51.556 14.808 1 37.73 ? C4 GDP 184 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #