data_1MOZ # _model_server_result.job_id JfgHXLBen77DxhA49XqOTQ _model_server_result.datetime_utc '2025-02-27 14:01:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1moz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 1MOZ # _exptl.entry_id 1MOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MOZ _cell.length_a 104.25 _cell.length_b 104.25 _cell.length_c 45.69 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 81 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 81 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 81 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 81 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.017 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 1MOZ _atom_sites.fract_transf_matrix[1][1] 0.009592 _atom_sites.fract_transf_matrix[1][2] 0.005538 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 184 1 GDP GDP . D 2 GDP B 1 201 1 GDP GDP . E 3 HOH A 1 185 1 HOH TIP . E 3 HOH A 2 186 2 HOH TIP . E 3 HOH A 3 187 3 HOH TIP . E 3 HOH A 4 188 4 HOH TIP . E 3 HOH A 5 189 5 HOH TIP . E 3 HOH A 6 190 6 HOH TIP . E 3 HOH A 7 191 8 HOH TIP . F 3 HOH B 1 202 7 HOH TIP . F 3 HOH B 2 203 11 HOH TIP . F 3 HOH B 3 204 12 HOH TIP . F 3 HOH B 4 205 13 HOH TIP . F 3 HOH B 5 206 14 HOH TIP . F 3 HOH B 6 207 15 HOH TIP . F 3 HOH B 7 208 16 HOH TIP . F 3 HOH B 8 209 17 HOH TIP . F 3 HOH B 9 210 18 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . D 2 27.61 97.382 16.374 1 43.88 ? PB GDP 201 B 1 HETATM 2 O O1B GDP . . . D 2 26.233 96.997 16.013 1 45.14 ? O1B GDP 201 B 1 HETATM 3 O O2B GDP . . . D 2 28.624 96.308 16.436 1 44.83 ? O2B GDP 201 B 1 HETATM 4 O O3B GDP . . . D 2 27.554 98.18 17.719 1 38.21 ? O3B GDP 201 B 1 HETATM 5 O O3A GDP . . . D 2 28.134 98.506 15.32 1 41.39 ? O3A GDP 201 B 1 HETATM 6 P PA GDP . . . D 2 29.474 98.551 14.433 1 40.77 ? PA GDP 201 B 1 HETATM 7 O O1A GDP . . . D 2 30.675 98.381 15.292 1 39.22 ? O1A GDP 201 B 1 HETATM 8 O O2A GDP . . . D 2 29.285 97.713 13.241 1 40.93 ? O2A GDP 201 B 1 HETATM 9 O O5' GDP . . . D 2 29.402 100.111 14.036 1 41.12 ? O5' GDP 201 B 1 HETATM 10 C C5' GDP . . . D 2 28.343 100.577 13.186 1 40.64 ? C5' GDP 201 B 1 HETATM 11 C C4' GDP . . . D 2 28.84 101.618 12.165 1 38.08 ? C4' GDP 201 B 1 HETATM 12 O O4' GDP . . . D 2 29.343 102.736 12.886 1 38 ? O4' GDP 201 B 1 HETATM 13 C C3' GDP . . . D 2 29.963 101.149 11.267 1 36.72 ? C3' GDP 201 B 1 HETATM 14 O O3' GDP . . . D 2 29.668 101.477 9.932 1 33.94 ? O3' GDP 201 B 1 HETATM 15 C C2' GDP . . . D 2 31.255 101.813 11.802 1 36.26 ? C2' GDP 201 B 1 HETATM 16 O O2' GDP . . . D 2 32.262 102.177 10.841 1 39.72 ? O2' GDP 201 B 1 HETATM 17 C C1' GDP . . . D 2 30.699 103.029 12.514 1 36.53 ? C1' GDP 201 B 1 HETATM 18 N N9 GDP . . . D 2 31.417 103.371 13.756 1 36.62 ? N9 GDP 201 B 1 HETATM 19 C C8 GDP . . . D 2 31.641 102.621 14.883 1 39.59 ? C8 GDP 201 B 1 HETATM 20 N N7 GDP . . . D 2 32.303 103.194 15.84 1 39.14 ? N7 GDP 201 B 1 HETATM 21 C C5 GDP . . . D 2 32.545 104.458 15.317 1 37.64 ? C5 GDP 201 B 1 HETATM 22 C C6 GDP . . . D 2 33.236 105.582 15.897 1 36.97 ? C6 GDP 201 B 1 HETATM 23 O O6 GDP . . . D 2 33.759 105.665 16.991 1 38.22 ? O6 GDP 201 B 1 HETATM 24 N N1 GDP . . . D 2 33.277 106.685 15.032 1 38.35 ? N1 GDP 201 B 1 HETATM 25 C C2 GDP . . . D 2 32.712 106.738 13.765 1 39.62 ? C2 GDP 201 B 1 HETATM 26 N N2 GDP . . . D 2 32.861 107.871 13.1 1 39.24 ? N2 GDP 201 B 1 HETATM 27 N N3 GDP . . . D 2 32.064 105.693 13.2 1 40.31 ? N3 GDP 201 B 1 HETATM 28 C C4 GDP . . . D 2 32.007 104.588 14.033 1 37.73 ? C4 GDP 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #