data_1MP8 # _model_server_result.job_id rSPHOcS4QRvQpPQzLcrriw _model_server_result.datetime_utc '2024-10-31 07:14:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":800}' # _entry.id 1MP8 # _exptl.entry_id 1MP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 80.57 _cell.angle_gamma 90 _cell.entry_id 1MP8 _cell.length_a 45.189 _cell.length_b 46.636 _cell.length_c 62.225 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 51 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 456 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 54 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 459 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.009 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MP8 _atom_sites.fract_transf_matrix[1][1] 0.022129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.003677 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 800 800 ADP ADP . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 81 81 HOH HOH . C 3 HOH A 81 82 82 HOH HOH . C 3 HOH A 82 83 83 HOH HOH . C 3 HOH A 83 84 84 HOH HOH . C 3 HOH A 84 85 85 HOH HOH . C 3 HOH A 85 86 86 HOH HOH . C 3 HOH A 86 87 87 HOH HOH . C 3 HOH A 87 88 88 HOH HOH . C 3 HOH A 88 89 89 HOH HOH . C 3 HOH A 89 90 90 HOH HOH . C 3 HOH A 90 91 91 HOH HOH . C 3 HOH A 91 93 93 HOH HOH . C 3 HOH A 92 94 94 HOH HOH . C 3 HOH A 93 95 95 HOH HOH . C 3 HOH A 94 96 96 HOH HOH . C 3 HOH A 95 97 97 HOH HOH . C 3 HOH A 96 98 98 HOH HOH . C 3 HOH A 97 99 99 HOH HOH . C 3 HOH A 98 100 100 HOH HOH . C 3 HOH A 99 101 101 HOH HOH . C 3 HOH A 100 102 102 HOH HOH . C 3 HOH A 101 103 103 HOH HOH . C 3 HOH A 102 104 104 HOH HOH . C 3 HOH A 103 105 105 HOH HOH . C 3 HOH A 104 106 106 HOH HOH . C 3 HOH A 105 107 107 HOH HOH . C 3 HOH A 106 108 108 HOH HOH . C 3 HOH A 107 109 109 HOH HOH . C 3 HOH A 108 110 110 HOH HOH . C 3 HOH A 109 111 111 HOH HOH . C 3 HOH A 110 112 112 HOH HOH . C 3 HOH A 111 113 113 HOH HOH . C 3 HOH A 112 114 114 HOH HOH . C 3 HOH A 113 115 115 HOH HOH . C 3 HOH A 114 116 116 HOH HOH . C 3 HOH A 115 117 117 HOH HOH . C 3 HOH A 116 118 118 HOH HOH . C 3 HOH A 117 119 119 HOH HOH . C 3 HOH A 118 120 120 HOH HOH . C 3 HOH A 119 121 121 HOH HOH . C 3 HOH A 120 122 122 HOH HOH . C 3 HOH A 121 123 123 HOH HOH . C 3 HOH A 122 124 124 HOH HOH . C 3 HOH A 123 127 127 HOH HOH . C 3 HOH A 124 129 129 HOH HOH . C 3 HOH A 125 130 130 HOH HOH . C 3 HOH A 126 131 131 HOH HOH . C 3 HOH A 127 132 132 HOH HOH . C 3 HOH A 128 133 133 HOH HOH . C 3 HOH A 129 134 134 HOH HOH . C 3 HOH A 130 135 135 HOH HOH . C 3 HOH A 131 136 136 HOH HOH . C 3 HOH A 132 137 137 HOH HOH . C 3 HOH A 133 138 138 HOH HOH . C 3 HOH A 134 139 139 HOH HOH . C 3 HOH A 135 140 140 HOH HOH . C 3 HOH A 136 141 141 HOH HOH . C 3 HOH A 137 142 142 HOH HOH . C 3 HOH A 138 143 143 HOH HOH . C 3 HOH A 139 144 144 HOH HOH . C 3 HOH A 140 145 145 HOH HOH . C 3 HOH A 141 146 146 HOH HOH . C 3 HOH A 142 147 147 HOH HOH . C 3 HOH A 143 148 148 HOH HOH . C 3 HOH A 144 149 149 HOH HOH . C 3 HOH A 145 150 150 HOH HOH . C 3 HOH A 146 151 151 HOH HOH . C 3 HOH A 147 152 152 HOH HOH . C 3 HOH A 148 153 153 HOH HOH . C 3 HOH A 149 154 154 HOH HOH . C 3 HOH A 150 155 155 HOH HOH . C 3 HOH A 151 156 156 HOH HOH . C 3 HOH A 152 157 157 HOH HOH . C 3 HOH A 153 158 158 HOH HOH . C 3 HOH A 154 159 159 HOH HOH . C 3 HOH A 155 160 160 HOH HOH . C 3 HOH A 156 161 161 HOH HOH . C 3 HOH A 157 162 162 HOH HOH . C 3 HOH A 158 163 163 HOH HOH . C 3 HOH A 159 164 164 HOH HOH . C 3 HOH A 160 165 165 HOH HOH . C 3 HOH A 161 166 166 HOH HOH . C 3 HOH A 162 167 167 HOH HOH . C 3 HOH A 163 168 168 HOH HOH . C 3 HOH A 164 169 169 HOH HOH . C 3 HOH A 165 170 170 HOH HOH . C 3 HOH A 166 171 171 HOH HOH . C 3 HOH A 167 172 172 HOH HOH . C 3 HOH A 168 173 173 HOH HOH . C 3 HOH A 169 175 175 HOH HOH . C 3 HOH A 170 176 176 HOH HOH . C 3 HOH A 171 177 177 HOH HOH . C 3 HOH A 172 178 178 HOH HOH . C 3 HOH A 173 179 179 HOH HOH . C 3 HOH A 174 180 180 HOH HOH . C 3 HOH A 175 181 181 HOH HOH . C 3 HOH A 176 182 182 HOH HOH . C 3 HOH A 177 183 183 HOH HOH . C 3 HOH A 178 184 184 HOH HOH . C 3 HOH A 179 185 185 HOH HOH . C 3 HOH A 180 186 186 HOH HOH . C 3 HOH A 181 187 187 HOH HOH . C 3 HOH A 182 188 188 HOH HOH . C 3 HOH A 183 189 189 HOH HOH . C 3 HOH A 184 190 190 HOH HOH . C 3 HOH A 185 192 192 HOH HOH . C 3 HOH A 186 194 194 HOH HOH . C 3 HOH A 187 195 195 HOH HOH . C 3 HOH A 188 196 196 HOH HOH . C 3 HOH A 189 197 197 HOH HOH . C 3 HOH A 190 198 198 HOH HOH . C 3 HOH A 191 199 199 HOH HOH . C 3 HOH A 192 200 200 HOH HOH . C 3 HOH A 193 201 201 HOH HOH . C 3 HOH A 194 202 202 HOH HOH . C 3 HOH A 195 203 203 HOH HOH . C 3 HOH A 196 205 205 HOH HOH . C 3 HOH A 197 206 206 HOH HOH . C 3 HOH A 198 207 207 HOH HOH . C 3 HOH A 199 208 208 HOH HOH . C 3 HOH A 200 209 209 HOH HOH . C 3 HOH A 201 210 210 HOH HOH . C 3 HOH A 202 211 211 HOH HOH . C 3 HOH A 203 212 212 HOH HOH . C 3 HOH A 204 213 213 HOH HOH . C 3 HOH A 205 214 214 HOH HOH . C 3 HOH A 206 215 215 HOH HOH . C 3 HOH A 207 217 217 HOH HOH . C 3 HOH A 208 219 219 HOH HOH . C 3 HOH A 209 220 220 HOH HOH . C 3 HOH A 210 221 221 HOH HOH . C 3 HOH A 211 222 222 HOH HOH . C 3 HOH A 212 223 223 HOH HOH . C 3 HOH A 213 224 224 HOH HOH . C 3 HOH A 214 225 225 HOH HOH . C 3 HOH A 215 226 226 HOH HOH . C 3 HOH A 216 227 227 HOH HOH . C 3 HOH A 217 231 231 HOH HOH . C 3 HOH A 218 232 232 HOH HOH . C 3 HOH A 219 233 233 HOH HOH . C 3 HOH A 220 234 234 HOH HOH . C 3 HOH A 221 235 235 HOH HOH . C 3 HOH A 222 236 236 HOH HOH . C 3 HOH A 223 240 240 HOH HOH . C 3 HOH A 224 241 241 HOH HOH . C 3 HOH A 225 242 242 HOH HOH . C 3 HOH A 226 243 243 HOH HOH . C 3 HOH A 227 245 245 HOH HOH . C 3 HOH A 228 246 246 HOH HOH . C 3 HOH A 229 248 248 HOH HOH . C 3 HOH A 230 249 249 HOH HOH . C 3 HOH A 231 251 251 HOH HOH . C 3 HOH A 232 252 252 HOH HOH . C 3 HOH A 233 256 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 32.333 -6.683 23.084 1 33.41 ? PB ADP 800 A 1 HETATM 2 O O1B ADP . . . B 2 32.735 -8.044 23.54 1 30.95 ? O1B ADP 800 A 1 HETATM 3 O O2B ADP . . . B 2 30.841 -6.43 23.288 1 29.05 ? O2B ADP 800 A 1 HETATM 4 O O3B ADP . . . B 2 32.812 -6.473 21.623 1 32.75 ? O3B ADP 800 A 1 HETATM 5 P PA ADP . . . B 2 34.068 -4.522 23.518 1 30.43 ? PA ADP 800 A 1 HETATM 6 O O1A ADP . . . B 2 35.127 -5.212 22.791 1 26.75 ? O1A ADP 800 A 1 HETATM 7 O O2A ADP . . . B 2 33.47 -3.373 22.734 1 28.43 ? O2A ADP 800 A 1 HETATM 8 O O3A ADP . . . B 2 32.962 -5.544 24.033 1 29.78 ? O3A ADP 800 A 1 HETATM 9 O O5' ADP . . . B 2 34.547 -4.049 24.972 1 25.93 ? O5' ADP 800 A 1 HETATM 10 C C5' ADP . . . B 2 33.736 -3.194 25.746 1 22.02 ? C5' ADP 800 A 1 HETATM 11 C C4' ADP . . . B 2 34.562 -2.01 26.194 1 20.06 ? C4' ADP 800 A 1 HETATM 12 O O4' ADP . . . B 2 35.766 -2.442 26.769 1 16.21 ? O4' ADP 800 A 1 HETATM 13 C C3' ADP . . . B 2 35.054 -1.106 25.079 1 17.69 ? C3' ADP 800 A 1 HETATM 14 O O3' ADP . . . B 2 34.03 -0.251 24.679 1 22.08 ? O3' ADP 800 A 1 HETATM 15 C C2' ADP . . . B 2 36.23 -0.413 25.742 1 17 ? C2' ADP 800 A 1 HETATM 16 O O2' ADP . . . B 2 35.783 0.521 26.703 1 20.92 ? O2' ADP 800 A 1 HETATM 17 C C1' ADP . . . B 2 36.826 -1.553 26.534 1 15.46 ? C1' ADP 800 A 1 HETATM 18 N N9 ADP . . . B 2 37.791 -2.325 25.741 1 13.49 ? N9 ADP 800 A 1 HETATM 19 C C8 ADP . . . B 2 37.56 -3.504 25.071 1 13.71 ? C8 ADP 800 A 1 HETATM 20 N N7 ADP . . . B 2 38.704 -3.91 24.476 1 13.54 ? N7 ADP 800 A 1 HETATM 21 C C5 ADP . . . B 2 39.665 -2.991 24.774 1 13.14 ? C5 ADP 800 A 1 HETATM 22 C C6 ADP . . . B 2 41.013 -2.918 24.441 1 11.7 ? C6 ADP 800 A 1 HETATM 23 N N6 ADP . . . B 2 41.563 -3.779 23.583 1 12.47 ? N6 ADP 800 A 1 HETATM 24 N N1 ADP . . . B 2 41.757 -1.864 24.933 1 11.4 ? N1 ADP 800 A 1 HETATM 25 C C2 ADP . . . B 2 41.167 -0.902 25.697 1 11.25 ? C2 ADP 800 A 1 HETATM 26 N N3 ADP . . . B 2 39.824 -0.968 26.035 1 13.8 ? N3 ADP 800 A 1 HETATM 27 C C4 ADP . . . B 2 39.094 -2.008 25.562 1 12.57 ? C4 ADP 800 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #