data_1MPN # _model_server_result.job_id K8e10R-JhTbNoCgNp0W3Vw _model_server_result.datetime_utc '2024-10-24 04:27:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":422}' # _entry.id 1MPN # _exptl.entry_id 1MPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MPN _cell.length_a 131.9 _cell.length_b 214.8 _cell.length_c 220.2 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D GLC 1 D 1 GLC A 433 GLC 2 n D GLC 2 D 2 GLC A 432 GLC 2 n D GLC 3 D 3 GLC A 431 GLC 2 n E GLC 1 E 1 GLC B 433 GLC 2 n E GLC 2 E 2 GLC B 432 GLC 2 n E GLC 3 E 3 GLC B 431 GLC 2 n F GLC 1 F 1 GLC C 433 GLC 2 n F GLC 2 F 2 GLC C 432 GLC 2 n F GLC 3 F 3 GLC C 431 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 38 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 22 B CYS 22 1_555 B SG CYS 38 B CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 38 C CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale2 D O4 GLC . D GLC 2 1_555 D C1 GLC . D GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale3 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale4 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale5 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale6 F O4 GLC . F GLC 2 1_555 F C1 GLC . F GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? metalc ? metalc1 A OD1 ASP 78 A ASP 78 1_555 G MG MG . A MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc2 A OD2 ASP 78 A ASP 78 1_555 G MG MG . A MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc3 A OD1 ASP 78 A ASP 78 1_555 H MG MG . B MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc4 A OD2 ASP 78 A ASP 78 1_555 H MG MG . B MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc5 A OD1 ASP 78 A ASP 78 1_555 I MG MG . C MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 A OD2 ASP 78 A ASP 78 1_555 I MG MG . C MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc7 G MG MG . A MG 422 1_555 B OD1 ASP 78 B ASP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 G MG MG . A MG 422 1_555 B OD2 ASP 78 B ASP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc9 G MG MG . A MG 422 1_555 C OD1 ASP 78 C ASP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc10 G MG MG . A MG 422 1_555 C OD2 ASP 78 C ASP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc11 B OD2 ASP 78 B ASP 78 1_555 H MG MG . B MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc12 B OD1 ASP 78 B ASP 78 1_555 H MG MG . B MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc13 B OD1 ASP 78 B ASP 78 1_555 I MG MG . C MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc14 B OD2 ASP 78 B ASP 78 1_555 I MG MG . C MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc15 H MG MG . B MG 422 1_555 C OD1 ASP 78 C ASP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc16 H MG MG . B MG 422 1_555 C OD2 ASP 78 C ASP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc17 C OD1 ASP 78 C ASP 78 1_555 I MG MG . C MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc18 C OD2 ASP 78 C ASP 78 1_555 I MG MG . C MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MPN _atom_sites.fract_transf_matrix[1][1] 0.007582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 MG A 1 422 422 MG MG . H 3 MG B 1 422 422 MG MG . I 3 MG C 1 422 422 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.131 _atom_site.Cartn_y 36.632 _atom_site.Cartn_z 94.381 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 11.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 422 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #