data_1MPW # _model_server_result.job_id 9yn3zOleknMU6cFflhLyNA _model_server_result.datetime_utc '2024-10-18 20:29:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":417}' # _entry.id 1MPW # _exptl.entry_id 1MPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.28 _cell.angle_gamma 90 _cell.entry_id 1MPW _cell.length_a 66.903 _cell.length_b 62.517 _cell.length_c 95.698 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 84 A GLU 84 1_555 C K K . A K 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc2 A O GLY 93 A GLY 93 1_555 C K K . A K 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc3 A O GLU 94 A GLU 94 1_555 C K K . A K 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc4 A O PHE 96 A PHE 96 1_555 C K K . A K 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc5 A SG CYS 357 A CYS 357 1_555 D FE HEM . A HEM 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 B OE1 GLU 84 B GLU 84 1_555 F K K . B K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.321 ? metalc ? metalc7 B O GLU 84 B GLU 84 1_555 F K K . B K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc8 B O GLY 93 B GLY 93 1_555 F K K . B K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc9 B O GLU 94 B GLU 94 1_555 F K K . B K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.042 ? metalc ? metalc10 B O PHE 96 B PHE 96 1_555 F K K . B K 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc11 B SG CYS 357 B CYS 357 1_555 G FE HEM . B HEM 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1MPW _atom_sites.fract_transf_matrix[1][1] 0.014947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000072 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 418 418 K K . D 3 HEM A 1 417 417 HEM HEM . E 4 TMH A 1 1450 1450 TMH TMH . F 2 K B 1 1418 1418 K K . G 3 HEM B 1 417 417 HEM HEM . H 4 TMH B 1 450 450 TMH TMH . I 5 HOH A 1 1451 1 HOH HOH . I 5 HOH A 2 1452 2 HOH HOH . I 5 HOH A 3 1453 3 HOH HOH . I 5 HOH A 4 1454 4 HOH HOH . I 5 HOH A 5 1455 6 HOH HOH . I 5 HOH A 6 1456 8 HOH HOH . I 5 HOH A 7 1457 9 HOH HOH . I 5 HOH A 8 1458 12 HOH HOH . I 5 HOH A 9 1459 13 HOH HOH . I 5 HOH A 10 1460 14 HOH HOH . I 5 HOH A 11 1461 15 HOH HOH . I 5 HOH A 12 1462 16 HOH HOH . I 5 HOH A 13 1463 17 HOH HOH . I 5 HOH A 14 1464 18 HOH HOH . I 5 HOH A 15 1465 19 HOH HOH . I 5 HOH A 16 1466 21 HOH HOH . I 5 HOH A 17 1467 22 HOH HOH . I 5 HOH A 18 1468 23 HOH HOH . I 5 HOH A 19 1469 24 HOH HOH . I 5 HOH A 20 1470 25 HOH HOH . I 5 HOH A 21 1471 26 HOH HOH . I 5 HOH A 22 1472 27 HOH HOH . I 5 HOH A 23 1473 28 HOH HOH . I 5 HOH A 24 1474 31 HOH HOH . I 5 HOH A 25 1475 32 HOH HOH . I 5 HOH A 26 1476 34 HOH HOH . I 5 HOH A 27 1477 35 HOH HOH . I 5 HOH A 28 1478 36 HOH HOH . I 5 HOH A 29 1479 37 HOH HOH . I 5 HOH A 30 1480 40 HOH HOH . I 5 HOH A 31 1481 46 HOH HOH . I 5 HOH A 32 1482 51 HOH HOH . I 5 HOH A 33 1483 52 HOH HOH . I 5 HOH A 34 1484 54 HOH HOH . I 5 HOH A 35 1485 55 HOH HOH . I 5 HOH A 36 1486 56 HOH HOH . I 5 HOH A 37 1487 58 HOH HOH . I 5 HOH A 38 1488 59 HOH HOH . I 5 HOH A 39 1489 61 HOH HOH . I 5 HOH A 40 1490 63 HOH HOH . I 5 HOH A 41 1491 65 HOH HOH . I 5 HOH A 42 1492 68 HOH HOH . I 5 HOH A 43 1493 69 HOH HOH . I 5 HOH A 44 1494 70 HOH HOH . I 5 HOH A 45 1495 71 HOH HOH . I 5 HOH A 46 1496 72 HOH HOH . I 5 HOH A 47 1497 73 HOH HOH . I 5 HOH A 48 1498 76 HOH HOH . I 5 HOH A 49 1499 79 HOH HOH . I 5 HOH A 50 1500 83 HOH HOH . I 5 HOH A 51 1501 84 HOH HOH . I 5 HOH A 52 1502 86 HOH HOH . I 5 HOH A 53 1503 87 HOH HOH . I 5 HOH A 54 1504 91 HOH HOH . I 5 HOH A 55 1505 92 HOH HOH . I 5 HOH A 56 1506 93 HOH HOH . I 5 HOH A 57 1507 94 HOH HOH . I 5 HOH A 58 1508 95 HOH HOH . I 5 HOH A 59 1509 96 HOH HOH . I 5 HOH A 60 1510 97 HOH HOH . I 5 HOH A 61 1511 98 HOH HOH . I 5 HOH A 62 1512 101 HOH HOH . I 5 HOH A 63 1513 102 HOH HOH . I 5 HOH A 64 1514 105 HOH HOH . I 5 HOH A 65 1515 106 HOH HOH . I 5 HOH A 66 1516 108 HOH HOH . J 5 HOH B 1 1419 5 HOH HOH . J 5 HOH B 2 1420 7 HOH HOH . J 5 HOH B 3 1421 10 HOH HOH . J 5 HOH B 4 1422 11 HOH HOH . J 5 HOH B 5 1423 20 HOH HOH . J 5 HOH B 6 1424 29 HOH HOH . J 5 HOH B 7 1425 33 HOH HOH . J 5 HOH B 8 1426 38 HOH HOH . J 5 HOH B 9 1427 39 HOH HOH . J 5 HOH B 10 1428 41 HOH HOH . J 5 HOH B 11 1429 42 HOH HOH . J 5 HOH B 12 1430 43 HOH HOH . J 5 HOH B 13 1431 44 HOH HOH . J 5 HOH B 14 1432 45 HOH HOH . J 5 HOH B 15 1433 47 HOH HOH . J 5 HOH B 16 1434 48 HOH HOH . J 5 HOH B 17 1435 49 HOH HOH . J 5 HOH B 18 1436 50 HOH HOH . J 5 HOH B 19 1437 53 HOH HOH . J 5 HOH B 20 1438 57 HOH HOH . J 5 HOH B 21 1439 60 HOH HOH . J 5 HOH B 22 1440 62 HOH HOH . J 5 HOH B 23 1441 66 HOH HOH . J 5 HOH B 24 1442 67 HOH HOH . J 5 HOH B 25 1443 74 HOH HOH . J 5 HOH B 26 1444 75 HOH HOH . J 5 HOH B 27 1445 77 HOH HOH . J 5 HOH B 28 1446 78 HOH HOH . J 5 HOH B 29 1447 80 HOH HOH . J 5 HOH B 30 1448 81 HOH HOH . J 5 HOH B 31 1449 82 HOH HOH . J 5 HOH B 32 1450 85 HOH HOH . J 5 HOH B 33 1451 88 HOH HOH . J 5 HOH B 34 1452 89 HOH HOH . J 5 HOH B 35 1453 90 HOH HOH . J 5 HOH B 36 1454 99 HOH HOH . J 5 HOH B 37 1455 100 HOH HOH . J 5 HOH B 38 1456 103 HOH HOH . J 5 HOH B 39 1457 104 HOH HOH . J 5 HOH B 40 1458 107 HOH HOH . J 5 HOH B 41 1459 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 25 -9.635 -46.362 1 6.73 ? CHA HEM 417 A 1 HETATM 2 C CHB HEM . . . D 3 20.412 -9.822 -48.08 1 5.93 ? CHB HEM 417 A 1 HETATM 3 C CHC HEM . . . D 3 22.107 -11.171 -52.456 1 10.03 ? CHC HEM 417 A 1 HETATM 4 C CHD HEM . . . D 3 26.605 -11.236 -50.683 1 11.86 ? CHD HEM 417 A 1 HETATM 5 C C1A HEM . . . D 3 23.614 -9.591 -46.446 1 6.77 ? C1A HEM 417 A 1 HETATM 6 C C2A HEM . . . D 3 22.686 -9.266 -45.362 1 6.69 ? C2A HEM 417 A 1 HETATM 7 C C3A HEM . . . D 3 21.448 -9.351 -45.841 1 5.59 ? C3A HEM 417 A 1 HETATM 8 C C4A HEM . . . D 3 21.551 -9.7 -47.269 1 7.32 ? C4A HEM 417 A 1 HETATM 9 C CMA HEM . . . D 3 20.101 -9.119 -45.154 1 2.86 ? CMA HEM 417 A 1 HETATM 10 C CAA HEM . . . D 3 23.104 -8.874 -43.892 1 7.64 ? CAA HEM 417 A 1 HETATM 11 C CBA HEM . . . D 3 23.323 -9.97 -42.887 1 7.72 ? CBA HEM 417 A 1 HETATM 12 C CGA HEM . . . D 3 23.746 -9.431 -41.477 1 7.83 ? CGA HEM 417 A 1 HETATM 13 O O1A HEM . . . D 3 23.865 -8.239 -41.261 1 9.86 ? O1A HEM 417 A 1 HETATM 14 O O2A HEM . . . D 3 23.906 -10.416 -40.772 1 8.28 ? O2A HEM 417 A 1 HETATM 15 C C1B HEM . . . D 3 20.481 -10.144 -49.407 1 7.86 ? C1B HEM 417 A 1 HETATM 16 C C2B HEM . . . D 3 19.321 -10.139 -50.322 1 7.28 ? C2B HEM 417 A 1 HETATM 17 C C3B HEM . . . D 3 19.77 -10.494 -51.52 1 8.16 ? C3B HEM 417 A 1 HETATM 18 C C4B HEM . . . D 3 21.253 -10.768 -51.406 1 8.84 ? C4B HEM 417 A 1 HETATM 19 C CMB HEM . . . D 3 17.915 -9.739 -49.838 1 4.08 ? CMB HEM 417 A 1 HETATM 20 C CAB HEM . . . D 3 19.053 -10.646 -52.908 1 8.04 ? CAB HEM 417 A 1 HETATM 21 C CBB HEM . . . D 3 17.769 -10.411 -53.154 1 6.7 ? CBB HEM 417 A 1 HETATM 22 C C1C HEM . . . D 3 23.489 -11.361 -52.359 1 11.22 ? C1C HEM 417 A 1 HETATM 23 C C2C HEM . . . D 3 24.38 -11.822 -53.422 1 12.61 ? C2C HEM 417 A 1 HETATM 24 C C3C HEM . . . D 3 25.629 -11.842 -52.883 1 14.51 ? C3C HEM 417 A 1 HETATM 25 C C4C HEM . . . D 3 25.512 -11.393 -51.5 1 12.44 ? C4C HEM 417 A 1 HETATM 26 C CMC HEM . . . D 3 23.955 -12.207 -54.903 1 11.84 ? CMC HEM 417 A 1 HETATM 27 C CAC HEM . . . D 3 27.067 -12.232 -53.517 1 17.11 ? CAC HEM 417 A 1 HETATM 28 C CBC HEM . . . D 3 27.15 -13.314 -54.299 1 19.58 ? CBC HEM 417 A 1 HETATM 29 C C1D HEM . . . D 3 26.551 -10.77 -49.399 1 9.71 ? C1D HEM 417 A 1 HETATM 30 C C2D HEM . . . D 3 27.736 -10.593 -48.555 1 10.35 ? C2D HEM 417 A 1 HETATM 31 C C3D HEM . . . D 3 27.288 -10.159 -47.377 1 8.83 ? C3D HEM 417 A 1 HETATM 32 C C4D HEM . . . D 3 25.825 -10.037 -47.419 1 8.23 ? C4D HEM 417 A 1 HETATM 33 C CMD HEM . . . D 3 29.203 -10.898 -49.031 1 7.59 ? CMD HEM 417 A 1 HETATM 34 C CAD HEM . . . D 3 28.1 -9.842 -46.113 1 8.06 ? CAD HEM 417 A 1 HETATM 35 C CBD HEM . . . D 3 28.329 -8.473 -45.709 1 9.44 ? CBD HEM 417 A 1 HETATM 36 C CGD HEM . . . D 3 29.115 -8.423 -44.336 1 10.16 ? CGD HEM 417 A 1 HETATM 37 O O1D HEM . . . D 3 29.704 -7.371 -44.199 1 14.47 ? O1D HEM 417 A 1 HETATM 38 O O2D HEM . . . D 3 28.924 -9.411 -43.638 1 10.62 ? O2D HEM 417 A 1 HETATM 39 N NA HEM . . . D 3 22.902 -9.832 -47.616 1 7.78 ? NA HEM 417 A 1 HETATM 40 N NB HEM . . . D 3 21.628 -10.553 -50.064 1 8.85 ? NB HEM 417 A 1 HETATM 41 N NC HEM . . . D 3 24.244 -11.096 -51.187 1 11.21 ? NC HEM 417 A 1 HETATM 42 N ND HEM . . . D 3 25.452 -10.42 -48.685 1 9.88 ? ND HEM 417 A 1 HETATM 43 FE FE HEM . . . D 3 23.558 -10.151 -49.524 1 9.54 ? FE HEM 417 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #