data_1MQ0
#
_model_server_result.job_id            Vf52n48Q5zWfLZpZLBRRuw 
_model_server_result.datetime_utc      '2024-11-29 09:54:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mq0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":148}' 
#
_entry.id    1MQ0 
#
_exptl.entry_id    1MQ0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.229 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-BETA-RIBOFURANOSYL-1,3-DIAZEPINONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MQ0 
_cell.length_a            52.398 
_cell.length_b            55.68 
_cell.length_c            90.689 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MQ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_685 -x+1,-y+3,z -1 0 0 0 -1 0 0 0 1 52.398 167.04 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 59 A CYS 65 1_555 C ZN ZN . A ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc2 A SG CYS 93 A CYS 99 1_555 C ZN ZN . A ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc3 A SG CYS 96 A CYS 102 1_555 C ZN ZN . A ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc4 B SG CYS 59 B CYS 65 1_555 E ZN ZN . B ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc5 B SG CYS 93 B CYS 99 1_555 E ZN ZN . B ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc6 B SG CYS 96 B CYS 102 1_555 E ZN ZN . B ZN 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc7 E ZN ZN . B ZN 147 1_555 H O HOH . B HOH 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
#
_chem_comp.formula           'C10 H14 N2 O5' 
_chem_comp.formula_weight    242.229 
_chem_comp.id                BRD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-BETA-RIBOFURANOSYL-1,3-DIAZEPINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 N3 BRD sing 70 n n 
C4 C5 BRD doub 71 n n 
C4 HC4 BRD sing 72 n n 
N3 C2 BRD sing 73 n n 
N3 HN3 BRD sing 74 n n 
C2 N1 BRD sing 75 n n 
C2 O2 BRD doub 76 n n 
N1 C7 BRD sing 77 n n 
N1 C1' BRD sing 78 n n 
C7 C6 BRD doub 79 n n 
C7 HC7 BRD sing 80 n n 
C6 C5 BRD sing 81 n n 
C6 HC6 BRD sing 82 n n 
C1' O4' BRD sing 83 n n 
C1' C2' BRD sing 84 n n 
C1' H1' BRD sing 85 n n 
O4' C4' BRD sing 86 n n 
C4' C3' BRD sing 87 n n 
C4' C5' BRD sing 88 n n 
C4' H4' BRD sing 89 n n 
C3' C2' BRD sing 90 n n 
C3' O3' BRD sing 91 n n 
C3' "H3'1" BRD sing 92 n n 
C2' O2' BRD sing 93 n n 
C2' H2' BRD sing 94 n n 
O2' "H2'1" BRD sing 95 n n 
O3' H3' BRD sing 96 n n 
C5' O5' BRD sing 97 n n 
C5' "H5'1" BRD sing 98 n n 
C5' "H5'2" BRD sing 99 n n 
O5' H5' BRD sing 100 n n 
C5 HC5 BRD sing 101 n n 
#
_atom_sites.entry_id                     1MQ0 
_atom_sites.fract_transf_matrix[1][1]    0.019085 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 147 147 ZN ZN . 
D 3 BRD A 1 148 148 BRD BRD . 
E 2 ZN B 1 147 147 ZN ZN . 
F 3 BRD B 1 149 149 BRD BRD . 
G 4 HOH A 1 149 4 HOH HOH . 
G 4 HOH A 2 150 8 HOH HOH . 
G 4 HOH A 3 151 11 HOH HOH . 
G 4 HOH A 4 152 15 HOH HOH . 
G 4 HOH A 5 153 17 HOH HOH . 
G 4 HOH A 6 154 19 HOH HOH . 
G 4 HOH A 7 155 22 HOH HOH . 
G 4 HOH A 8 156 23 HOH HOH . 
G 4 HOH A 9 157 25 HOH HOH . 
G 4 HOH A 10 158 27 HOH HOH . 
G 4 HOH A 11 159 28 HOH HOH . 
G 4 HOH A 12 160 29 HOH HOH . 
G 4 HOH A 13 161 31 HOH HOH . 
G 4 HOH A 14 162 32 HOH HOH . 
G 4 HOH A 15 163 39 HOH HOH . 
G 4 HOH A 16 164 43 HOH HOH . 
G 4 HOH A 17 165 44 HOH HOH . 
G 4 HOH A 18 166 45 HOH HOH . 
G 4 HOH A 19 167 51 HOH HOH . 
G 4 HOH A 20 168 53 HOH HOH . 
G 4 HOH A 21 169 54 HOH HOH . 
G 4 HOH A 22 170 55 HOH HOH . 
G 4 HOH A 23 171 56 HOH HOH . 
G 4 HOH A 24 172 60 HOH HOH . 
H 4 HOH B 1 150 1 HOH HOH . 
H 4 HOH B 2 151 2 HOH HOH . 
H 4 HOH B 3 152 3 HOH HOH . 
H 4 HOH B 4 153 5 HOH HOH . 
H 4 HOH B 5 154 6 HOH HOH . 
H 4 HOH B 6 155 7 HOH HOH . 
H 4 HOH B 7 156 9 HOH HOH . 
H 4 HOH B 8 157 10 HOH HOH . 
H 4 HOH B 9 158 12 HOH HOH . 
H 4 HOH B 10 159 13 HOH HOH . 
H 4 HOH B 11 160 14 HOH HOH . 
H 4 HOH B 12 161 16 HOH HOH . 
H 4 HOH B 13 162 18 HOH HOH . 
H 4 HOH B 14 163 20 HOH HOH . 
H 4 HOH B 15 164 21 HOH HOH . 
H 4 HOH B 16 165 24 HOH HOH . 
H 4 HOH B 17 166 26 HOH HOH . 
H 4 HOH B 18 167 30 HOH HOH . 
H 4 HOH B 19 168 33 HOH HOH . 
H 4 HOH B 20 169 34 HOH HOH . 
H 4 HOH B 21 170 35 HOH HOH . 
H 4 HOH B 22 171 36 HOH HOH . 
H 4 HOH B 23 172 37 HOH HOH . 
H 4 HOH B 24 173 38 HOH HOH . 
H 4 HOH B 25 174 40 HOH HOH . 
H 4 HOH B 26 175 41 HOH HOH . 
H 4 HOH B 27 176 42 HOH HOH . 
H 4 HOH B 28 177 46 HOH HOH . 
H 4 HOH B 29 178 47 HOH HOH . 
H 4 HOH B 30 179 48 HOH HOH . 
H 4 HOH B 31 180 49 HOH HOH . 
H 4 HOH B 32 181 50 HOH HOH . 
H 4 HOH B 33 182 52 HOH HOH . 
H 4 HOH B 34 183 57 HOH HOH . 
H 4 HOH B 35 184 58 HOH HOH . 
H 4 HOH B 36 185 61 HOH HOH . 
H 4 HOH B 37 186 62 HOH HOH . 
H 4 HOH B 38 187 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 BRD . . . D 3 29.798 93.986 102.67 1 38.84 ? C4 BRD 148 A 1 
HETATM 2 N N3 BRD . . . D 3 29.184 94.137 103.992 1 36.67 ? N3 BRD 148 A 1 
HETATM 3 C C2 BRD . . . D 3 29.748 94.067 105.222 1 34.95 ? C2 BRD 148 A 1 
HETATM 4 N N1 BRD . . . D 3 30.86 93.361 105.592 1 37.07 ? N1 BRD 148 A 1 
HETATM 5 C C7 BRD . . . D 3 31.227 92.181 104.8 1 37.34 ? C7 BRD 148 A 1 
HETATM 6 C C6 BRD . . . D 3 31.821 92.6 103.48 1 39.29 ? C6 BRD 148 A 1 
HETATM 7 O O2 BRD . . . D 3 29.052 94.75 106.154 1 34.78 ? O2 BRD 148 A 1 
HETATM 8 C C1' BRD . . . D 3 31.635 93.783 106.788 1 36.88 ? C1' BRD 148 A 1 
HETATM 9 O O4' BRD . . . D 3 32.989 94.06 106.483 1 37.02 ? O4' BRD 148 A 1 
HETATM 10 C C4' BRD . . . D 3 33.82 93.681 107.572 1 36.56 ? C4' BRD 148 A 1 
HETATM 11 C C3' BRD . . . D 3 32.932 93.065 108.677 1 35.1 ? C3' BRD 148 A 1 
HETATM 12 C C2' BRD . . . D 3 31.66 92.715 107.902 1 36.38 ? C2' BRD 148 A 1 
HETATM 13 O O2' BRD . . . D 3 30.521 92.819 108.72 1 38.08 ? O2' BRD 148 A 1 
HETATM 14 O O3' BRD . . . D 3 32.658 94.04 109.662 1 34.39 ? O3' BRD 148 A 1 
HETATM 15 C C5' BRD . . . D 3 34.924 92.725 107.039 1 38.53 ? C5' BRD 148 A 1 
HETATM 16 O O5' BRD . . . D 3 34.513 91.373 107.089 1 40.95 ? O5' BRD 148 A 1 
HETATM 17 C C5 BRD . . . D 3 31.183 93.356 102.551 1 37.61 ? C5 BRD 148 A 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#