data_1MQ5
#
_model_server_result.job_id            YzG-oovRS8CEpdMAXVDP3w 
_model_server_result.datetime_utc      '2024-12-04 19:54:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mq5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    1MQ5 
#
_exptl.entry_id    1MQ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MQ5 
_cell.length_a            56.363 
_cell.length_b            72.018 
_cell.length_c            78.922 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MQ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf8 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 A OD2 ASP 56 A ASP 70 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
metalc ? metalc4 A OE2 GLU 63 A GLU 77 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc5 A OE2 GLU 66 A GLU 80 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc6 C CA CA . A CA 501 1_555 H O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1MQ5 
_atom_sites.fract_transf_matrix[1][1]    0.017742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 501 501 CA CA . 
D 4 XLC A 1 500 500 XLC LIG . 
E 5 GOL A 1 502 502 GOL GOL . 
F 5 GOL A 1 503 503 GOL GOL . 
G 5 GOL L 1 504 504 GOL GOL . 
H 6 HOH A 1 600 600 HOH HOH . 
H 6 HOH A 2 601 601 HOH HOH . 
H 6 HOH A 3 602 602 HOH HOH . 
H 6 HOH A 4 603 603 HOH HOH . 
H 6 HOH A 5 604 604 HOH HOH . 
H 6 HOH A 6 605 605 HOH HOH . 
H 6 HOH A 7 606 606 HOH HOH . 
H 6 HOH A 8 607 607 HOH HOH . 
H 6 HOH A 9 608 608 HOH HOH . 
H 6 HOH A 10 610 610 HOH HOH . 
H 6 HOH A 11 611 611 HOH HOH . 
H 6 HOH A 12 612 612 HOH HOH . 
H 6 HOH A 13 613 613 HOH HOH . 
H 6 HOH A 14 614 614 HOH HOH . 
H 6 HOH A 15 615 615 HOH HOH . 
H 6 HOH A 16 616 616 HOH HOH . 
H 6 HOH A 17 618 618 HOH HOH . 
H 6 HOH A 18 619 619 HOH HOH . 
H 6 HOH A 19 620 620 HOH HOH . 
H 6 HOH A 20 621 621 HOH HOH . 
H 6 HOH A 21 622 622 HOH HOH . 
H 6 HOH A 22 623 623 HOH HOH . 
H 6 HOH A 23 625 625 HOH HOH . 
H 6 HOH A 24 626 626 HOH HOH . 
H 6 HOH A 25 628 628 HOH HOH . 
H 6 HOH A 26 630 630 HOH HOH . 
H 6 HOH A 27 631 631 HOH HOH . 
H 6 HOH A 28 633 633 HOH HOH . 
H 6 HOH A 29 635 635 HOH HOH . 
H 6 HOH A 30 636 636 HOH HOH . 
H 6 HOH A 31 637 637 HOH HOH . 
H 6 HOH A 32 639 639 HOH HOH . 
H 6 HOH A 33 640 640 HOH HOH . 
H 6 HOH A 34 641 641 HOH HOH . 
H 6 HOH A 35 642 642 HOH HOH . 
H 6 HOH A 36 643 643 HOH HOH . 
H 6 HOH A 37 644 644 HOH HOH . 
H 6 HOH A 38 645 645 HOH HOH . 
H 6 HOH A 39 646 646 HOH HOH . 
H 6 HOH A 40 647 647 HOH HOH . 
H 6 HOH A 41 648 648 HOH HOH . 
H 6 HOH A 42 649 649 HOH HOH . 
H 6 HOH A 43 650 650 HOH HOH . 
H 6 HOH A 44 652 652 HOH HOH . 
H 6 HOH A 45 654 654 HOH HOH . 
H 6 HOH A 46 655 655 HOH HOH . 
H 6 HOH A 47 657 657 HOH HOH . 
H 6 HOH A 48 658 658 HOH HOH . 
H 6 HOH A 49 659 659 HOH HOH . 
H 6 HOH A 50 661 661 HOH HOH . 
H 6 HOH A 51 662 662 HOH HOH . 
H 6 HOH A 52 663 663 HOH HOH . 
H 6 HOH A 53 664 664 HOH HOH . 
H 6 HOH A 54 666 666 HOH HOH . 
H 6 HOH A 55 667 667 HOH HOH . 
H 6 HOH A 56 668 668 HOH HOH . 
H 6 HOH A 57 669 669 HOH HOH . 
H 6 HOH A 58 673 673 HOH HOH . 
H 6 HOH A 59 674 674 HOH HOH . 
H 6 HOH A 60 675 675 HOH HOH . 
H 6 HOH A 61 676 676 HOH HOH . 
H 6 HOH A 62 678 678 HOH HOH . 
H 6 HOH A 63 679 679 HOH HOH . 
H 6 HOH A 64 680 680 HOH HOH . 
H 6 HOH A 65 681 681 HOH HOH . 
H 6 HOH A 66 683 683 HOH HOH . 
H 6 HOH A 67 684 684 HOH HOH . 
H 6 HOH A 68 685 685 HOH HOH . 
H 6 HOH A 69 686 686 HOH HOH . 
H 6 HOH A 70 687 687 HOH HOH . 
H 6 HOH A 71 688 688 HOH HOH . 
H 6 HOH A 72 689 689 HOH HOH . 
H 6 HOH A 73 691 691 HOH HOH . 
H 6 HOH A 74 692 692 HOH HOH . 
H 6 HOH A 75 694 694 HOH HOH . 
H 6 HOH A 76 695 695 HOH HOH . 
H 6 HOH A 77 696 696 HOH HOH . 
H 6 HOH A 78 697 697 HOH HOH . 
H 6 HOH A 79 698 698 HOH HOH . 
H 6 HOH A 80 699 699 HOH HOH . 
H 6 HOH A 81 700 700 HOH HOH . 
H 6 HOH A 82 701 701 HOH HOH . 
H 6 HOH A 83 703 703 HOH HOH . 
H 6 HOH A 84 704 704 HOH HOH . 
H 6 HOH A 85 705 705 HOH HOH . 
H 6 HOH A 86 711 711 HOH HOH . 
H 6 HOH A 87 712 712 HOH HOH . 
H 6 HOH A 88 713 713 HOH HOH . 
H 6 HOH A 89 714 714 HOH HOH . 
H 6 HOH A 90 715 715 HOH HOH . 
H 6 HOH A 91 717 717 HOH HOH . 
H 6 HOH A 92 718 718 HOH HOH . 
H 6 HOH A 93 719 719 HOH HOH . 
H 6 HOH A 94 720 720 HOH HOH . 
H 6 HOH A 95 721 721 HOH HOH . 
H 6 HOH A 96 723 723 HOH HOH . 
H 6 HOH A 97 724 724 HOH HOH . 
H 6 HOH A 98 725 725 HOH HOH . 
H 6 HOH A 99 726 726 HOH HOH . 
H 6 HOH A 100 727 727 HOH HOH . 
H 6 HOH A 101 729 729 HOH HOH . 
H 6 HOH A 102 730 730 HOH HOH . 
H 6 HOH A 103 731 731 HOH HOH . 
H 6 HOH A 104 732 732 HOH HOH . 
H 6 HOH A 105 733 733 HOH HOH . 
H 6 HOH A 106 736 736 HOH HOH . 
H 6 HOH A 107 737 737 HOH HOH . 
H 6 HOH A 108 738 738 HOH HOH . 
H 6 HOH A 109 739 739 HOH HOH . 
H 6 HOH A 110 741 741 HOH HOH . 
H 6 HOH A 111 743 743 HOH HOH . 
H 6 HOH A 112 744 744 HOH HOH . 
H 6 HOH A 113 746 746 HOH HOH . 
H 6 HOH A 114 747 747 HOH HOH . 
H 6 HOH A 115 748 748 HOH HOH . 
H 6 HOH A 116 750 750 HOH HOH . 
H 6 HOH A 117 751 751 HOH HOH . 
H 6 HOH A 118 752 752 HOH HOH . 
H 6 HOH A 119 753 753 HOH HOH . 
H 6 HOH A 120 756 756 HOH HOH . 
H 6 HOH A 121 757 757 HOH HOH . 
H 6 HOH A 122 758 758 HOH HOH . 
H 6 HOH A 123 759 759 HOH HOH . 
H 6 HOH A 124 760 760 HOH HOH . 
H 6 HOH A 125 761 761 HOH HOH . 
H 6 HOH A 126 762 762 HOH HOH . 
H 6 HOH A 127 763 763 HOH HOH . 
H 6 HOH A 128 766 766 HOH HOH . 
H 6 HOH A 129 767 767 HOH HOH . 
H 6 HOH A 130 770 770 HOH HOH . 
H 6 HOH A 131 771 771 HOH HOH . 
I 6 HOH L 1 609 609 HOH HOH . 
I 6 HOH L 2 617 617 HOH HOH . 
I 6 HOH L 3 624 624 HOH HOH . 
I 6 HOH L 4 627 627 HOH HOH . 
I 6 HOH L 5 629 629 HOH HOH . 
I 6 HOH L 6 632 632 HOH HOH . 
I 6 HOH L 7 634 634 HOH HOH . 
I 6 HOH L 8 638 638 HOH HOH . 
I 6 HOH L 9 651 651 HOH HOH . 
I 6 HOH L 10 653 653 HOH HOH . 
I 6 HOH L 11 656 656 HOH HOH . 
I 6 HOH L 12 660 660 HOH HOH . 
I 6 HOH L 13 665 665 HOH HOH . 
I 6 HOH L 14 670 670 HOH HOH . 
I 6 HOH L 15 671 671 HOH HOH . 
I 6 HOH L 16 672 672 HOH HOH . 
I 6 HOH L 17 677 677 HOH HOH . 
I 6 HOH L 18 682 682 HOH HOH . 
I 6 HOH L 19 690 690 HOH HOH . 
I 6 HOH L 20 693 693 HOH HOH . 
I 6 HOH L 21 702 702 HOH HOH . 
I 6 HOH L 22 706 706 HOH HOH . 
I 6 HOH L 23 707 707 HOH HOH . 
I 6 HOH L 24 708 708 HOH HOH . 
I 6 HOH L 25 709 709 HOH HOH . 
I 6 HOH L 26 710 710 HOH HOH . 
I 6 HOH L 27 716 716 HOH HOH . 
I 6 HOH L 28 722 722 HOH HOH . 
I 6 HOH L 29 728 728 HOH HOH . 
I 6 HOH L 30 734 734 HOH HOH . 
I 6 HOH L 31 735 735 HOH HOH . 
I 6 HOH L 32 740 740 HOH HOH . 
I 6 HOH L 33 742 742 HOH HOH . 
I 6 HOH L 34 745 745 HOH HOH . 
I 6 HOH L 35 749 749 HOH HOH . 
I 6 HOH L 36 754 754 HOH HOH . 
I 6 HOH L 37 755 755 HOH HOH . 
I 6 HOH L 38 764 764 HOH HOH . 
I 6 HOH L 39 765 765 HOH HOH . 
I 6 HOH L 40 768 768 HOH HOH . 
I 6 HOH L 41 769 769 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 34.408 23.579 22.806 1 48.33 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . E 5 34.05 24.378 23.961 1 39.58 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . E 5 33.235 23.378 21.764 1 40.59 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . E 5 32.823 22.003 21.807 1 48.8 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . E 5 33.677 23.699 20.287 1 47.25 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . E 5 32.869 24.698 19.615 1 35.08 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           685 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#