data_1MQE
#
_model_server_result.job_id            MmmdAEQrIQU2fklUQjVPWg 
_model_server_result.datetime_utc      '2024-10-18 23:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mqe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":208}' 
#
_entry.id    1MQE 
#
_exptl.entry_id    1MQE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1MQE 
_cell.length_a            64.052 
_cell.length_b            64.052 
_cell.length_c            182.212 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MQE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 30.368667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 93 A GLU 93 1_555 C GD GD3 . A GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? 
metalc ? metalc2 B O1A APR . A APR 208 1_555 C GD GD3 . A GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc3 C GD GD3 . A GD3 301 1_555 D O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? 
metalc ? metalc4 C GD GD3 . A GD3 301 1_555 D O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     1MQE 
_atom_sites.fract_transf_matrix[1][1]    0.015612 
_atom_sites.fract_transf_matrix[1][2]    0.009014 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 APR A 1 208 201 APR APR . 
C 3 GD3 A 1 301 301 GD3 GD3 . 
D 4 HOH A 1 302 2 HOH HOH . 
D 4 HOH A 2 303 3 HOH HOH . 
D 4 HOH A 3 304 5 HOH HOH . 
D 4 HOH A 4 305 6 HOH HOH . 
D 4 HOH A 5 306 7 HOH HOH . 
D 4 HOH A 6 307 8 HOH HOH . 
D 4 HOH A 7 308 9 HOH HOH . 
D 4 HOH A 8 309 10 HOH HOH . 
D 4 HOH A 9 310 11 HOH HOH . 
D 4 HOH A 10 311 12 HOH HOH . 
D 4 HOH A 11 312 13 HOH HOH . 
D 4 HOH A 12 313 15 HOH HOH . 
D 4 HOH A 13 314 16 HOH HOH . 
D 4 HOH A 14 315 17 HOH HOH . 
D 4 HOH A 15 316 18 HOH HOH . 
D 4 HOH A 16 317 19 HOH HOH . 
D 4 HOH A 17 318 20 HOH HOH . 
D 4 HOH A 18 319 21 HOH HOH . 
D 4 HOH A 19 320 22 HOH HOH . 
D 4 HOH A 20 321 23 HOH HOH . 
D 4 HOH A 21 322 24 HOH HOH . 
D 4 HOH A 22 323 25 HOH HOH . 
D 4 HOH A 23 324 26 HOH HOH . 
D 4 HOH A 24 325 27 HOH HOH . 
D 4 HOH A 25 326 29 HOH HOH . 
D 4 HOH A 26 327 30 HOH HOH . 
D 4 HOH A 27 328 31 HOH HOH . 
D 4 HOH A 28 329 32 HOH HOH . 
D 4 HOH A 29 330 35 HOH HOH . 
D 4 HOH A 30 331 36 HOH HOH . 
D 4 HOH A 31 332 38 HOH HOH . 
D 4 HOH A 32 333 39 HOH HOH . 
D 4 HOH A 33 334 41 HOH HOH . 
D 4 HOH A 34 335 43 HOH HOH . 
D 4 HOH A 35 336 44 HOH HOH . 
D 4 HOH A 36 337 46 HOH HOH . 
D 4 HOH A 37 338 47 HOH HOH . 
D 4 HOH A 38 339 48 HOH HOH . 
D 4 HOH A 39 340 50 HOH HOH . 
D 4 HOH A 40 341 51 HOH HOH . 
D 4 HOH A 41 342 53 HOH HOH . 
D 4 HOH A 42 343 55 HOH HOH . 
D 4 HOH A 43 344 57 HOH HOH . 
D 4 HOH A 44 345 58 HOH HOH . 
D 4 HOH A 45 346 63 HOH HOH . 
D 4 HOH A 46 347 64 HOH HOH . 
D 4 HOH A 47 348 65 HOH HOH . 
D 4 HOH A 48 349 66 HOH HOH . 
D 4 HOH A 49 350 67 HOH HOH . 
D 4 HOH A 50 351 68 HOH HOH . 
D 4 HOH A 51 352 71 HOH HOH . 
D 4 HOH A 52 353 75 HOH HOH . 
D 4 HOH A 53 354 77 HOH HOH . 
D 4 HOH A 54 355 79 HOH HOH . 
D 4 HOH A 55 356 80 HOH HOH . 
D 4 HOH A 56 357 82 HOH HOH . 
D 4 HOH A 57 358 83 HOH HOH . 
D 4 HOH A 58 359 88 HOH HOH . 
D 4 HOH A 59 360 89 HOH HOH . 
D 4 HOH A 60 361 90 HOH HOH . 
D 4 HOH A 61 362 93 HOH HOH . 
D 4 HOH A 62 363 94 HOH HOH . 
D 4 HOH A 63 364 97 HOH HOH . 
D 4 HOH A 64 365 102 HOH HOH . 
D 4 HOH A 65 366 103 HOH HOH . 
D 4 HOH A 66 367 107 HOH HOH . 
D 4 HOH A 67 368 112 HOH HOH . 
D 4 HOH A 68 369 114 HOH HOH . 
D 4 HOH A 69 370 115 HOH HOH . 
D 4 HOH A 70 371 118 HOH HOH . 
D 4 HOH A 71 372 123 HOH HOH . 
D 4 HOH A 72 373 124 HOH HOH . 
D 4 HOH A 73 374 127 HOH HOH . 
D 4 HOH A 74 375 130 HOH HOH . 
D 4 HOH A 75 376 131 HOH HOH . 
D 4 HOH A 76 377 132 HOH HOH . 
D 4 HOH A 77 378 135 HOH HOH . 
D 4 HOH A 78 379 137 HOH HOH . 
D 4 HOH A 79 380 138 HOH HOH . 
D 4 HOH A 80 381 139 HOH HOH . 
D 4 HOH A 81 382 141 HOH HOH . 
D 4 HOH A 82 383 142 HOH HOH . 
D 4 HOH A 83 384 143 HOH HOH . 
D 4 HOH A 84 385 144 HOH HOH . 
D 4 HOH A 85 386 145 HOH HOH . 
D 4 HOH A 86 387 146 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . B 2 33.342 22.158 5.407 1 55.25 ? N1 APR 208 A 1 
HETATM 2 C C2 APR . . . B 2 33.17 23.235 4.571 1 55.82 ? C2 APR 208 A 1 
HETATM 3 N N3 APR . . . B 2 31.953 23.382 3.951 1 54.78 ? N3 APR 208 A 1 
HETATM 4 C C4 APR . . . B 2 30.939 22.491 4.159 1 53.89 ? C4 APR 208 A 1 
HETATM 5 C C5 APR . . . B 2 31.125 21.399 5.012 1 54.91 ? C5 APR 208 A 1 
HETATM 6 C C6 APR . . . B 2 32.324 21.251 5.623 1 55.1 ? C6 APR 208 A 1 
HETATM 7 N N6 APR . . . B 2 32.489 20.184 6.45 1 53.77 ? N6 APR 208 A 1 
HETATM 8 N N7 APR . . . B 2 29.969 20.653 5.057 1 54.43 ? N7 APR 208 A 1 
HETATM 9 C C8 APR . . . B 2 29.072 21.266 4.243 1 53.58 ? C8 APR 208 A 1 
HETATM 10 N N9 APR . . . B 2 29.658 22.386 3.691 1 53.45 ? N9 APR 208 A 1 
HETATM 11 C C1' APR . . . B 2 28.963 23.276 2.757 1 53.76 ? C1' APR 208 A 1 
HETATM 12 C C2' APR . . . B 2 29.044 23.452 1.262 1 53.87 ? C2' APR 208 A 1 
HETATM 13 O O2' APR . . . B 2 29.445 24.815 1.104 1 53.72 ? O2' APR 208 A 1 
HETATM 14 C C3' APR . . . B 2 27.623 23.086 0.968 1 53.26 ? C3' APR 208 A 1 
HETATM 15 O O3' APR . . . B 2 27.319 23.476 -0.35 1 55.75 ? O3' APR 208 A 1 
HETATM 16 O O4' APR . . . B 2 27.819 24.068 3.133 1 52.52 ? O4' APR 208 A 1 
HETATM 17 C C4' APR . . . B 2 26.881 23.927 2.034 1 52.29 ? C4' APR 208 A 1 
HETATM 18 C C5' APR . . . B 2 25.738 22.929 2.172 1 50.92 ? C5' APR 208 A 1 
HETATM 19 O O5' APR . . . B 2 24.619 23.637 2.648 1 48.09 ? O5' APR 208 A 1 
HETATM 20 P PA APR . . . B 2 23.231 23.009 2.95 1 44.54 ? PA APR 208 A 1 
HETATM 21 O O1A APR . . . B 2 22.851 22.37 1.601 1 52.25 ? O1A APR 208 A 1 
HETATM 22 O O2A APR . . . B 2 22.43 24.26 3.402 1 44.08 ? O2A APR 208 A 1 
HETATM 23 O O3A APR . . . B 2 23.201 21.935 4.092 1 45.12 ? O3A APR 208 A 1 
HETATM 24 P PB APR . . . B 2 23.708 20.487 4.391 1 39.75 ? PB APR 208 A 1 
HETATM 25 O O1B APR . . . B 2 25.239 20.321 4.247 1 39.38 ? O1B APR 208 A 1 
HETATM 26 O O2B APR . . . B 2 23.016 19.448 3.452 1 39.89 ? O2B APR 208 A 1 
HETATM 27 O O5D APR . . . B 2 23.314 20.041 5.803 1 39.74 ? O5D APR 208 A 1 
HETATM 28 C C5D APR . . . B 2 21.983 20.044 6.308 1 38.71 ? C5D APR 208 A 1 
HETATM 29 O O4D APR . . . B 2 22.287 17.774 6.995 1 39.13 ? O4D APR 208 A 1 
HETATM 30 O O1D APR . . . B 2 22.978 16.038 8.034 1 41.16 ? O1D APR 208 A 1 
HETATM 31 C C1D APR . . . B 2 23.511 17.186 7.408 1 39.66 ? C1D APR 208 A 1 
HETATM 32 O O2D APR . . . B 2 24.847 17.522 9.293 1 37.91 ? O2D APR 208 A 1 
HETATM 33 C C2D APR . . . B 2 24.306 18.211 8.195 1 38.16 ? C2D APR 208 A 1 
HETATM 34 O O3D APR . . . B 2 22.568 19.288 9.684 1 38.73 ? O3D APR 208 A 1 
HETATM 35 C C3D APR . . . B 2 23.292 19.27 8.477 1 37.88 ? C3D APR 208 A 1 
HETATM 36 C C4D APR . . . B 2 22.083 19.088 7.515 1 39.67 ? C4D APR 208 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           36 
#