data_1MQJ # _model_server_result.job_id '_XITVxnJNsnndWnlEvXMxQ' _model_server_result.datetime_utc '2024-12-01 12:46:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1MQJ # _exptl.entry_id 1MQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.164 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-AMINO-3-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MQJ _cell.length_a 64.142 _cell.length_b 93.223 _cell.length_c 48.537 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OE1 GLU 42 A GLU 42 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 A NE2 HIS 46 A HIS 46 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc3 B ZN ZN . A ZN 401 1_555 D O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? # _chem_comp.formula 'C7 H9 N3 O4' _chem_comp.formula_weight 199.164 _chem_comp.id HWD _chem_comp.mon_nstd_flag . _chem_comp.name '2-AMINO-3-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms WILLARDIINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HWD sing 152 n y N1 C6 HWD sing 153 n y N1 C7 HWD sing 154 n n C2 O2 HWD doub 155 n n C2 N3 HWD sing 156 n y N3 C4 HWD sing 157 n y N3 H3 HWD sing 158 n n C4 O4 HWD doub 159 n n C4 C5 HWD sing 160 n y C5 C6 HWD doub 161 n y C5 H5 HWD sing 162 n n C6 H6 HWD sing 163 n n C7 C8 HWD sing 164 n n C7 H71 HWD sing 165 n n C7 H72 HWD sing 166 n n C8 N8 HWD sing 167 n n C8 C9 HWD sing 168 n n C8 H8 HWD sing 169 n n N8 H81 HWD sing 170 n n N8 H82 HWD sing 171 n n C9 O91 HWD doub 172 n n C9 O92 HWD sing 173 n n O92 H92O HWD sing 174 n n # _atom_sites.entry_id 1MQJ _atom_sites.fract_transf_matrix[1][1] 0.01559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 HWD A 1 301 1 HWD HW . D 4 HOH A 1 402 1 HOH TIP . D 4 HOH A 2 403 2 HOH TIP . D 4 HOH A 3 404 3 HOH TIP . D 4 HOH A 4 405 4 HOH TIP . D 4 HOH A 5 406 5 HOH TIP . D 4 HOH A 6 407 6 HOH TIP . D 4 HOH A 7 408 7 HOH TIP . D 4 HOH A 8 409 8 HOH TIP . D 4 HOH A 9 410 9 HOH TIP . D 4 HOH A 10 411 10 HOH TIP . D 4 HOH A 11 412 11 HOH TIP . D 4 HOH A 12 413 12 HOH TIP . D 4 HOH A 13 414 13 HOH TIP . D 4 HOH A 14 415 14 HOH TIP . D 4 HOH A 15 416 15 HOH TIP . D 4 HOH A 16 417 16 HOH TIP . D 4 HOH A 17 418 17 HOH TIP . D 4 HOH A 18 419 18 HOH TIP . D 4 HOH A 19 420 19 HOH TIP . D 4 HOH A 20 421 20 HOH TIP . D 4 HOH A 21 422 21 HOH TIP . D 4 HOH A 22 423 22 HOH TIP . D 4 HOH A 23 424 23 HOH TIP . D 4 HOH A 24 425 24 HOH TIP . D 4 HOH A 25 426 25 HOH TIP . D 4 HOH A 26 427 26 HOH TIP . D 4 HOH A 27 428 27 HOH TIP . D 4 HOH A 28 429 28 HOH TIP . D 4 HOH A 29 430 29 HOH TIP . D 4 HOH A 30 431 30 HOH TIP . D 4 HOH A 31 432 31 HOH TIP . D 4 HOH A 32 433 32 HOH TIP . D 4 HOH A 33 434 33 HOH TIP . D 4 HOH A 34 435 34 HOH TIP . D 4 HOH A 35 436 35 HOH TIP . D 4 HOH A 36 437 36 HOH TIP . D 4 HOH A 37 438 37 HOH TIP . D 4 HOH A 38 439 38 HOH TIP . D 4 HOH A 39 440 39 HOH TIP . D 4 HOH A 40 441 40 HOH TIP . D 4 HOH A 41 442 41 HOH TIP . D 4 HOH A 42 443 42 HOH TIP . D 4 HOH A 43 444 43 HOH TIP . D 4 HOH A 44 445 44 HOH TIP . D 4 HOH A 45 446 45 HOH TIP . D 4 HOH A 46 447 46 HOH TIP . D 4 HOH A 47 448 47 HOH TIP . D 4 HOH A 48 449 48 HOH TIP . D 4 HOH A 49 450 49 HOH TIP . D 4 HOH A 50 451 50 HOH TIP . D 4 HOH A 51 452 51 HOH TIP . D 4 HOH A 52 453 52 HOH TIP . D 4 HOH A 53 454 53 HOH TIP . D 4 HOH A 54 455 54 HOH TIP . D 4 HOH A 55 456 55 HOH TIP . D 4 HOH A 56 457 56 HOH TIP . D 4 HOH A 57 458 57 HOH TIP . D 4 HOH A 58 459 58 HOH TIP . D 4 HOH A 59 460 59 HOH TIP . D 4 HOH A 60 461 60 HOH TIP . D 4 HOH A 61 462 61 HOH TIP . D 4 HOH A 62 463 62 HOH TIP . D 4 HOH A 63 464 63 HOH TIP . D 4 HOH A 64 465 64 HOH TIP . D 4 HOH A 65 466 65 HOH TIP . D 4 HOH A 66 467 66 HOH TIP . D 4 HOH A 67 468 67 HOH TIP . D 4 HOH A 68 469 68 HOH TIP . D 4 HOH A 69 470 69 HOH TIP . D 4 HOH A 70 471 70 HOH TIP . D 4 HOH A 71 472 71 HOH TIP . D 4 HOH A 72 473 72 HOH TIP . D 4 HOH A 73 474 73 HOH TIP . D 4 HOH A 74 475 74 HOH TIP . D 4 HOH A 75 476 75 HOH TIP . D 4 HOH A 76 477 76 HOH TIP . D 4 HOH A 77 478 77 HOH TIP . D 4 HOH A 78 479 78 HOH TIP . D 4 HOH A 79 480 79 HOH TIP . D 4 HOH A 80 481 80 HOH TIP . D 4 HOH A 81 482 81 HOH TIP . D 4 HOH A 82 483 82 HOH TIP . D 4 HOH A 83 484 83 HOH TIP . D 4 HOH A 84 485 84 HOH TIP . D 4 HOH A 85 486 85 HOH TIP . D 4 HOH A 86 487 86 HOH TIP . D 4 HOH A 87 488 87 HOH TIP . D 4 HOH A 88 489 88 HOH TIP . D 4 HOH A 89 490 89 HOH TIP . D 4 HOH A 90 491 90 HOH TIP . D 4 HOH A 91 492 91 HOH TIP . D 4 HOH A 92 493 92 HOH TIP . D 4 HOH A 93 494 93 HOH TIP . D 4 HOH A 94 495 94 HOH TIP . D 4 HOH A 95 496 95 HOH TIP . D 4 HOH A 96 497 96 HOH TIP . D 4 HOH A 97 498 97 HOH TIP . D 4 HOH A 98 499 98 HOH TIP . D 4 HOH A 99 500 99 HOH TIP . D 4 HOH A 100 501 100 HOH TIP . D 4 HOH A 101 502 101 HOH TIP . D 4 HOH A 102 503 102 HOH TIP . D 4 HOH A 103 504 103 HOH TIP . D 4 HOH A 104 505 104 HOH TIP . D 4 HOH A 105 506 105 HOH TIP . D 4 HOH A 106 507 106 HOH TIP . D 4 HOH A 107 508 107 HOH TIP . D 4 HOH A 108 509 108 HOH TIP . D 4 HOH A 109 510 109 HOH TIP . D 4 HOH A 110 511 110 HOH TIP . D 4 HOH A 111 512 111 HOH TIP . D 4 HOH A 112 513 112 HOH TIP . D 4 HOH A 113 514 113 HOH TIP . D 4 HOH A 114 515 114 HOH TIP . D 4 HOH A 115 516 115 HOH TIP . D 4 HOH A 116 517 116 HOH TIP . D 4 HOH A 117 518 117 HOH TIP . D 4 HOH A 118 519 118 HOH TIP . D 4 HOH A 119 520 119 HOH TIP . D 4 HOH A 120 521 120 HOH TIP . D 4 HOH A 121 522 121 HOH TIP . D 4 HOH A 122 523 122 HOH TIP . D 4 HOH A 123 524 123 HOH TIP . D 4 HOH A 124 525 124 HOH TIP . D 4 HOH A 125 526 125 HOH TIP . D 4 HOH A 126 527 126 HOH TIP . D 4 HOH A 127 528 127 HOH TIP . D 4 HOH A 128 529 128 HOH TIP . D 4 HOH A 129 530 129 HOH TIP . D 4 HOH A 130 531 130 HOH TIP . D 4 HOH A 131 532 131 HOH TIP . D 4 HOH A 132 533 132 HOH TIP . D 4 HOH A 133 534 133 HOH TIP . D 4 HOH A 134 535 134 HOH TIP . D 4 HOH A 135 536 135 HOH TIP . D 4 HOH A 136 537 136 HOH TIP . D 4 HOH A 137 538 137 HOH TIP . D 4 HOH A 138 539 138 HOH TIP . D 4 HOH A 139 540 139 HOH TIP . D 4 HOH A 140 541 140 HOH TIP . D 4 HOH A 141 542 141 HOH TIP . D 4 HOH A 142 543 142 HOH TIP . D 4 HOH A 143 544 143 HOH TIP . D 4 HOH A 144 545 144 HOH TIP . D 4 HOH A 145 546 145 HOH TIP . D 4 HOH A 146 547 146 HOH TIP . D 4 HOH A 147 548 147 HOH TIP . D 4 HOH A 148 549 148 HOH TIP . D 4 HOH A 149 550 149 HOH TIP . D 4 HOH A 150 551 150 HOH TIP . D 4 HOH A 151 552 151 HOH TIP . D 4 HOH A 152 553 152 HOH TIP . D 4 HOH A 153 554 153 HOH TIP . D 4 HOH A 154 555 154 HOH TIP . D 4 HOH A 155 556 155 HOH TIP . D 4 HOH A 156 557 156 HOH TIP . D 4 HOH A 157 558 157 HOH TIP . D 4 HOH A 158 559 158 HOH TIP . D 4 HOH A 159 560 159 HOH TIP . D 4 HOH A 160 561 160 HOH TIP . D 4 HOH A 161 562 161 HOH TIP . D 4 HOH A 162 563 162 HOH TIP . D 4 HOH A 163 564 163 HOH TIP . D 4 HOH A 164 565 164 HOH TIP . D 4 HOH A 165 566 165 HOH TIP . D 4 HOH A 166 567 166 HOH TIP . D 4 HOH A 167 568 167 HOH TIP . D 4 HOH A 168 569 168 HOH TIP . D 4 HOH A 169 570 169 HOH TIP . D 4 HOH A 170 571 170 HOH TIP . D 4 HOH A 171 572 171 HOH TIP . D 4 HOH A 172 573 172 HOH TIP . D 4 HOH A 173 574 173 HOH TIP . D 4 HOH A 174 575 174 HOH TIP . D 4 HOH A 175 576 175 HOH TIP . D 4 HOH A 176 577 176 HOH TIP . D 4 HOH A 177 578 177 HOH TIP . D 4 HOH A 178 579 178 HOH TIP . D 4 HOH A 179 580 179 HOH TIP . D 4 HOH A 180 581 180 HOH TIP . D 4 HOH A 181 582 181 HOH TIP . D 4 HOH A 182 583 182 HOH TIP . D 4 HOH A 183 584 183 HOH TIP . D 4 HOH A 184 585 184 HOH TIP . D 4 HOH A 185 586 185 HOH TIP . D 4 HOH A 186 587 186 HOH TIP . D 4 HOH A 187 588 187 HOH TIP . D 4 HOH A 188 589 188 HOH TIP . D 4 HOH A 189 590 189 HOH TIP . D 4 HOH A 190 591 190 HOH TIP . D 4 HOH A 191 592 191 HOH TIP . D 4 HOH A 192 593 192 HOH TIP . D 4 HOH A 193 594 193 HOH TIP . D 4 HOH A 194 595 194 HOH TIP . D 4 HOH A 195 596 195 HOH TIP . D 4 HOH A 196 597 196 HOH TIP . D 4 HOH A 197 598 197 HOH TIP . D 4 HOH A 198 599 198 HOH TIP . D 4 HOH A 199 600 199 HOH TIP . D 4 HOH A 200 601 200 HOH TIP . D 4 HOH A 201 602 201 HOH TIP . D 4 HOH A 202 603 202 HOH TIP . D 4 HOH A 203 604 203 HOH TIP . D 4 HOH A 204 605 204 HOH TIP . D 4 HOH A 205 606 205 HOH TIP . D 4 HOH A 206 607 206 HOH TIP . D 4 HOH A 207 608 207 HOH TIP . D 4 HOH A 208 609 208 HOH TIP . D 4 HOH A 209 610 209 HOH TIP . D 4 HOH A 210 611 210 HOH TIP . D 4 HOH A 211 612 211 HOH TIP . D 4 HOH A 212 613 212 HOH TIP . D 4 HOH A 213 614 213 HOH TIP . D 4 HOH A 214 615 214 HOH TIP . D 4 HOH A 215 616 215 HOH TIP . D 4 HOH A 216 617 216 HOH TIP . D 4 HOH A 217 618 217 HOH TIP . D 4 HOH A 218 619 218 HOH TIP . D 4 HOH A 219 620 219 HOH TIP . D 4 HOH A 220 621 220 HOH TIP . D 4 HOH A 221 622 221 HOH TIP . D 4 HOH A 222 623 222 HOH TIP . D 4 HOH A 223 624 223 HOH TIP . D 4 HOH A 224 625 224 HOH TIP . D 4 HOH A 225 626 225 HOH TIP . D 4 HOH A 226 627 226 HOH TIP . D 4 HOH A 227 628 227 HOH TIP . D 4 HOH A 228 629 228 HOH TIP . D 4 HOH A 229 630 229 HOH TIP . D 4 HOH A 230 631 230 HOH TIP . D 4 HOH A 231 632 231 HOH TIP . D 4 HOH A 232 633 232 HOH TIP . D 4 HOH A 233 634 233 HOH TIP . D 4 HOH A 234 635 234 HOH TIP . D 4 HOH A 235 636 235 HOH TIP . D 4 HOH A 236 637 236 HOH TIP . D 4 HOH A 237 638 237 HOH TIP . D 4 HOH A 238 639 238 HOH TIP . D 4 HOH A 239 640 239 HOH TIP . D 4 HOH A 240 641 240 HOH TIP . D 4 HOH A 241 642 241 HOH TIP . D 4 HOH A 242 643 242 HOH TIP . D 4 HOH A 243 644 243 HOH TIP . D 4 HOH A 244 645 244 HOH TIP . D 4 HOH A 245 646 245 HOH TIP . D 4 HOH A 246 647 246 HOH TIP . D 4 HOH A 247 648 247 HOH TIP . D 4 HOH A 248 649 248 HOH TIP . D 4 HOH A 249 650 249 HOH TIP . D 4 HOH A 250 651 250 HOH TIP . D 4 HOH A 251 652 251 HOH TIP . D 4 HOH A 252 653 252 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HWD . . . C 3 16.266 1.712 15.43 1 12.02 ? N1 HWD 301 A 1 HETATM 2 C C2 HWD . . . C 3 16.391 0.409 14.863 1 13.38 ? C2 HWD 301 A 1 HETATM 3 O O2 HWD . . . C 3 16.468 -0.634 15.544 1 14.47 ? O2 HWD 301 A 1 HETATM 4 N N3 HWD . . . C 3 16.421 0.386 13.468 1 11.99 ? N3 HWD 301 A 1 HETATM 5 C C4 HWD . . . C 3 16.34 1.507 12.614 1 15.5 ? C4 HWD 301 A 1 HETATM 6 O O4 HWD . . . C 3 16.381 1.37 11.404 1 15.94 ? O4 HWD 301 A 1 HETATM 7 C C5 HWD . . . C 3 16.211 2.799 13.291 1 15.67 ? C5 HWD 301 A 1 HETATM 8 C C6 HWD . . . C 3 16.154 2.861 14.643 1 14.36 ? C6 HWD 301 A 1 HETATM 9 C C7 HWD . . . C 3 16.154 1.867 16.893 1 12.33 ? C7 HWD 301 A 1 HETATM 10 C C8 HWD . . . C 3 14.854 1.331 17.49 1 12.47 ? C8 HWD 301 A 1 HETATM 11 N N8 HWD . . . C 3 13.729 2.301 17.246 1 11.25 ? N8 HWD 301 A 1 HETATM 12 C C9 HWD . . . C 3 14.948 0.972 18.98 1 12.89 ? C9 HWD 301 A 1 HETATM 13 O O91 HWD . . . C 3 14.147 1.45 19.743 1 10.4 ? O91 HWD 301 A 1 HETATM 14 O O92 HWD . . . C 3 15.938 0.21 19.282 1 11.92 ? O92 HWD 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 14 #