data_1MQL # _model_server_result.job_id jhfbnIhgNBJeTMgI5teOrA _model_server_result.datetime_utc '2024-12-21 14:23:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":222}' # _entry.id 1MQL # _exptl.entry_id 1MQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MQL _cell.length_a 147.678 _cell.length_b 147.098 _cell.length_c 251.985 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 251.985 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 K N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 S N N ? 4 T N N ? 4 W N N ? 4 X N N ? 4 AA N N ? 4 BA N N ? 4 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 14 D CYS 14 1_555 D SG CYS 137 E CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 52 D CYS 52 1_555 C SG CYS 277 D CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 C SG CYS 64 D CYS 64 1_555 C SG CYS 76 D CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 97 D CYS 97 1_555 C SG CYS 139 D CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 C SG CYS 281 D CYS 281 1_555 C SG CYS 305 D CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf12 D SG CYS 144 E CYS 144 1_555 D SG CYS 148 E CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 E SG CYS 14 G CYS 14 1_555 F SG CYS 137 H CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf14 E SG CYS 52 G CYS 52 1_555 E SG CYS 277 G CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 E SG CYS 64 G CYS 64 1_555 E SG CYS 76 G CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf16 E SG CYS 97 G CYS 97 1_555 E SG CYS 139 G CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 E SG CYS 281 G CYS 281 1_555 E SG CYS 305 G CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 144 H CYS 144 1_555 F SG CYS 148 H CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 291 n n C1 O5 NDG sing 292 n n C1 O1 NDG sing 293 n n C1 H1 NDG sing 294 n n C2 C3 NDG sing 295 n n C2 N2 NDG sing 296 n n C2 H2 NDG sing 297 n n C3 C4 NDG sing 298 n n C3 O3 NDG sing 299 n n C3 H3 NDG sing 300 n n C4 C5 NDG sing 301 n n C4 O4 NDG sing 302 n n C4 H4 NDG sing 303 n n C5 C6 NDG sing 304 n n C5 O5 NDG sing 305 n n C5 H5 NDG sing 306 n n C6 O6 NDG sing 307 n n C6 H61 NDG sing 308 n n C6 H62 NDG sing 309 n n C7 C8 NDG sing 310 n n C7 O7 NDG doub 311 n n C7 N2 NDG sing 312 n n C8 H81 NDG sing 313 n n C8 H82 NDG sing 314 n n C8 H83 NDG sing 315 n n O3 HO3 NDG sing 316 n n O4 HO4 NDG sing 317 n n O6 HO6 NDG sing 318 n n N2 HN2 NDG sing 319 n n O1 HO1 NDG sing 320 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1MQL _atom_sites.fract_transf_matrix[1][1] 0.006771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 330 1 NAG NAG . H 4 NDG A 1 331 11 NDG NAG . I 3 NAG A 1 332 12 NAG NAG . J 3 NAG A 1 333 21 NAG NAG . K 4 NDG A 1 334 31 NDG NAG . L 3 NAG A 1 335 22 NAG NAG . M 5 MAN A 1 336 23 MAN MAN . N 5 MAN A 1 337 24 MAN MAN . O 4 NDG B 1 222 32 NDG NAG . P 4 NDG B 1 223 41 NDG NAG . Q 4 NDG D 1 330 1 NDG NAG . R 3 NAG D 1 331 11 NAG NAG . S 4 NDG D 1 332 21 NDG NAG . T 4 NDG D 1 333 22 NDG NAG . U 5 MAN D 1 334 23 MAN MAN . V 5 MAN D 1 335 24 MAN MAN . W 4 NDG E 1 241 41 NDG NAG . X 4 NDG G 1 330 22 NDG NAG . Y 5 MAN G 1 331 23 MAN MAN . Z 5 MAN G 1 332 24 MAN MAN . AA 4 NDG G 1 333 1 NDG NAG . BA 4 NDG G 1 334 11 NDG NAG . CA 3 NAG G 1 335 21 NAG NAG . DA 4 NDG G 1 336 31 NDG NAG . EA 3 NAG H 1 341 41 NAG NAG . FA 6 HOH A 1 338 3 HOH TIP . FA 6 HOH A 2 339 5 HOH TIP . FA 6 HOH A 3 340 10 HOH TIP . FA 6 HOH A 4 341 11 HOH TIP . FA 6 HOH A 5 342 13 HOH TIP . FA 6 HOH A 6 343 16 HOH TIP . FA 6 HOH A 7 344 17 HOH TIP . FA 6 HOH A 8 345 37 HOH TIP . FA 6 HOH A 9 346 42 HOH TIP . FA 6 HOH A 10 347 44 HOH TIP . GA 6 HOH B 1 224 6 HOH TIP . GA 6 HOH B 2 225 12 HOH TIP . GA 6 HOH B 3 226 21 HOH TIP . GA 6 HOH B 4 227 32 HOH TIP . GA 6 HOH B 5 228 45 HOH TIP . HA 6 HOH D 1 336 1 HOH TIP . HA 6 HOH D 2 337 2 HOH TIP . HA 6 HOH D 3 338 7 HOH TIP . HA 6 HOH D 4 339 14 HOH TIP . HA 6 HOH D 5 340 18 HOH TIP . HA 6 HOH D 6 341 20 HOH TIP . HA 6 HOH D 7 342 23 HOH TIP . HA 6 HOH D 8 343 28 HOH TIP . HA 6 HOH D 9 344 31 HOH TIP . HA 6 HOH D 10 345 33 HOH TIP . HA 6 HOH D 11 346 35 HOH TIP . IA 6 HOH E 1 242 4 HOH TIP . IA 6 HOH E 2 243 8 HOH TIP . IA 6 HOH E 3 244 15 HOH TIP . IA 6 HOH E 4 245 24 HOH TIP . IA 6 HOH E 5 246 34 HOH TIP . IA 6 HOH E 6 247 36 HOH TIP . IA 6 HOH E 7 248 38 HOH TIP . JA 6 HOH G 1 337 9 HOH TIP . JA 6 HOH G 2 338 19 HOH TIP . JA 6 HOH G 3 339 22 HOH TIP . JA 6 HOH G 4 340 25 HOH TIP . JA 6 HOH G 5 341 27 HOH TIP . JA 6 HOH G 6 342 29 HOH TIP . JA 6 HOH G 7 343 41 HOH TIP . JA 6 HOH G 8 344 46 HOH TIP . JA 6 HOH G 9 345 47 HOH TIP . KA 6 HOH H 1 342 26 HOH TIP . KA 6 HOH H 2 343 30 HOH TIP . KA 6 HOH H 3 344 39 HOH TIP . KA 6 HOH H 4 345 40 HOH TIP . KA 6 HOH H 5 346 43 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . O 4 42 34.986 109.814 1 100.6 ? C1 NDG 222 B 1 HETATM 2 C C2 NDG . . . O 4 40.742 34.142 109.546 1 100.6 ? C2 NDG 222 B 1 HETATM 3 C C3 NDG . . . O 4 41.05 32.651 109.728 1 100.6 ? C3 NDG 222 B 1 HETATM 4 C C4 NDG . . . O 4 42.312 32.255 108.935 1 100.6 ? C4 NDG 222 B 1 HETATM 5 C C5 NDG . . . O 4 43.499 33.23 109.172 1 100.6 ? C5 NDG 222 B 1 HETATM 6 C C6 NDG . . . O 4 44.65 32.975 108.213 1 100.6 ? C6 NDG 222 B 1 HETATM 7 C C7 NDG . . . O 4 38.424 34.63 109.932 1 100.6 ? C7 NDG 222 B 1 HETATM 8 C C8 NDG . . . O 4 37.358 33.745 110.55 1 99.92 ? C8 NDG 222 B 1 HETATM 9 O O5 NDG . . . O 4 43.085 34.597 108.959 1 100.6 ? O5 NDG 222 B 1 HETATM 10 O O3 NDG . . . O 4 39.953 31.884 109.247 1 100.6 ? O3 NDG 222 B 1 HETATM 11 O O4 NDG . . . O 4 42.701 30.925 109.275 1 100.6 ? O4 NDG 222 B 1 HETATM 12 O O6 NDG . . . O 4 45.906 33.269 108.812 1 100.6 ? O6 NDG 222 B 1 HETATM 13 O O7 NDG . . . O 4 38.113 35.412 109.021 1 100.6 ? O7 NDG 222 B 1 HETATM 14 N N2 NDG . . . O 4 39.659 34.544 110.421 1 100.6 ? N2 NDG 222 B 1 HETATM 15 O O1 NDG . . . O 4 42.402 34.927 111.14 1 100.6 ? O1 NDG 222 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #