data_1MQL
#
_model_server_result.job_id            R05LE1IbiQ5m_ADk7909NQ 
_model_server_result.datetime_utc      '2024-12-21 14:20:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mql 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":335}' 
#
_entry.id    1MQL 
#
_exptl.entry_id    1MQL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MQL 
_cell.length_a            147.678 
_cell.length_b            147.098 
_cell.length_c            251.985 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MQL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA dodecameric 12 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 251.985 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 L N N 
? 3 R N N 
? 3 CA N N 
? 3 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf7 C SG CYS 14 D CYS 14 1_555 D SG CYS 137 E CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 C SG CYS 52 D CYS 52 1_555 C SG CYS 277 D CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf9 C SG CYS 64 D CYS 64 1_555 C SG CYS 76 D CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf10 C SG CYS 97 D CYS 97 1_555 C SG CYS 139 D CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 C SG CYS 281 D CYS 281 1_555 C SG CYS 305 D CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf12 D SG CYS 144 E CYS 144 1_555 D SG CYS 148 E CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf13 E SG CYS 14 G CYS 14 1_555 F SG CYS 137 H CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf14 E SG CYS 52 G CYS 52 1_555 E SG CYS 277 G CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf15 E SG CYS 64 G CYS 64 1_555 E SG CYS 76 G CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf16 E SG CYS 97 G CYS 97 1_555 E SG CYS 139 G CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 E SG CYS 281 G CYS 281 1_555 E SG CYS 305 G CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf18 F SG CYS 144 H CYS 144 1_555 F SG CYS 148 H CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 261 n n 
C1 O1 NAG sing 262 n n 
C1 O5 NAG sing 263 n n 
C1 H1 NAG sing 264 n n 
C2 C3 NAG sing 265 n n 
C2 N2 NAG sing 266 n n 
C2 H2 NAG sing 267 n n 
C3 C4 NAG sing 268 n n 
C3 O3 NAG sing 269 n n 
C3 H3 NAG sing 270 n n 
C4 C5 NAG sing 271 n n 
C4 O4 NAG sing 272 n n 
C4 H4 NAG sing 273 n n 
C5 C6 NAG sing 274 n n 
C5 O5 NAG sing 275 n n 
C5 H5 NAG sing 276 n n 
C6 O6 NAG sing 277 n n 
C6 H61 NAG sing 278 n n 
C6 H62 NAG sing 279 n n 
C7 C8 NAG sing 280 n n 
C7 N2 NAG sing 281 n n 
C7 O7 NAG doub 282 n n 
C8 H81 NAG sing 283 n n 
C8 H82 NAG sing 284 n n 
C8 H83 NAG sing 285 n n 
N2 HN2 NAG sing 286 n n 
O1 HO1 NAG sing 287 n n 
O3 HO3 NAG sing 288 n n 
O4 HO4 NAG sing 289 n n 
O6 HO6 NAG sing 290 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1MQL 
_atom_sites.fract_transf_matrix[1][1]    0.006771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAG A 1 330 1 NAG NAG . 
H 4 NDG A 1 331 11 NDG NAG . 
I 3 NAG A 1 332 12 NAG NAG . 
J 3 NAG A 1 333 21 NAG NAG . 
K 4 NDG A 1 334 31 NDG NAG . 
L 3 NAG A 1 335 22 NAG NAG . 
M 5 MAN A 1 336 23 MAN MAN . 
N 5 MAN A 1 337 24 MAN MAN . 
O 4 NDG B 1 222 32 NDG NAG . 
P 4 NDG B 1 223 41 NDG NAG . 
Q 4 NDG D 1 330 1 NDG NAG . 
R 3 NAG D 1 331 11 NAG NAG . 
S 4 NDG D 1 332 21 NDG NAG . 
T 4 NDG D 1 333 22 NDG NAG . 
U 5 MAN D 1 334 23 MAN MAN . 
V 5 MAN D 1 335 24 MAN MAN . 
W 4 NDG E 1 241 41 NDG NAG . 
X 4 NDG G 1 330 22 NDG NAG . 
Y 5 MAN G 1 331 23 MAN MAN . 
Z 5 MAN G 1 332 24 MAN MAN . 
AA 4 NDG G 1 333 1 NDG NAG . 
BA 4 NDG G 1 334 11 NDG NAG . 
CA 3 NAG G 1 335 21 NAG NAG . 
DA 4 NDG G 1 336 31 NDG NAG . 
EA 3 NAG H 1 341 41 NAG NAG . 
FA 6 HOH A 1 338 3 HOH TIP . 
FA 6 HOH A 2 339 5 HOH TIP . 
FA 6 HOH A 3 340 10 HOH TIP . 
FA 6 HOH A 4 341 11 HOH TIP . 
FA 6 HOH A 5 342 13 HOH TIP . 
FA 6 HOH A 6 343 16 HOH TIP . 
FA 6 HOH A 7 344 17 HOH TIP . 
FA 6 HOH A 8 345 37 HOH TIP . 
FA 6 HOH A 9 346 42 HOH TIP . 
FA 6 HOH A 10 347 44 HOH TIP . 
GA 6 HOH B 1 224 6 HOH TIP . 
GA 6 HOH B 2 225 12 HOH TIP . 
GA 6 HOH B 3 226 21 HOH TIP . 
GA 6 HOH B 4 227 32 HOH TIP . 
GA 6 HOH B 5 228 45 HOH TIP . 
HA 6 HOH D 1 336 1 HOH TIP . 
HA 6 HOH D 2 337 2 HOH TIP . 
HA 6 HOH D 3 338 7 HOH TIP . 
HA 6 HOH D 4 339 14 HOH TIP . 
HA 6 HOH D 5 340 18 HOH TIP . 
HA 6 HOH D 6 341 20 HOH TIP . 
HA 6 HOH D 7 342 23 HOH TIP . 
HA 6 HOH D 8 343 28 HOH TIP . 
HA 6 HOH D 9 344 31 HOH TIP . 
HA 6 HOH D 10 345 33 HOH TIP . 
HA 6 HOH D 11 346 35 HOH TIP . 
IA 6 HOH E 1 242 4 HOH TIP . 
IA 6 HOH E 2 243 8 HOH TIP . 
IA 6 HOH E 3 244 15 HOH TIP . 
IA 6 HOH E 4 245 24 HOH TIP . 
IA 6 HOH E 5 246 34 HOH TIP . 
IA 6 HOH E 6 247 36 HOH TIP . 
IA 6 HOH E 7 248 38 HOH TIP . 
JA 6 HOH G 1 337 9 HOH TIP . 
JA 6 HOH G 2 338 19 HOH TIP . 
JA 6 HOH G 3 339 22 HOH TIP . 
JA 6 HOH G 4 340 25 HOH TIP . 
JA 6 HOH G 5 341 27 HOH TIP . 
JA 6 HOH G 6 342 29 HOH TIP . 
JA 6 HOH G 7 343 41 HOH TIP . 
JA 6 HOH G 8 344 46 HOH TIP . 
JA 6 HOH G 9 345 47 HOH TIP . 
KA 6 HOH H 1 342 26 HOH TIP . 
KA 6 HOH H 2 343 30 HOH TIP . 
KA 6 HOH H 3 344 39 HOH TIP . 
KA 6 HOH H 4 345 40 HOH TIP . 
KA 6 HOH H 5 346 43 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 3 45.905 34.966 70.596 1 97.58 ? C1 NAG 335 A 1 
HETATM 2 C C2 NAG . . . L 3 44.818 35.208 71.643 1 95.83 ? C2 NAG 335 A 1 
HETATM 3 C C3 NAG . . . L 3 43.431 35.528 71.041 1 97.16 ? C3 NAG 335 A 1 
HETATM 4 C C4 NAG . . . L 3 43.318 35.749 69.525 1 97.25 ? C4 NAG 335 A 1 
HETATM 5 C C5 NAG . . . L 3 44.523 35.235 68.729 1 97.71 ? C5 NAG 335 A 1 
HETATM 6 C C6 NAG . . . L 3 44.662 35.815 67.314 1 95.52 ? C6 NAG 335 A 1 
HETATM 7 C C7 NAG . . . L 3 45.301 33.911 73.61 1 89.07 ? C7 NAG 335 A 1 
HETATM 8 C C8 NAG . . . L 3 45.268 32.57 74.358 1 87.54 ? C8 NAG 335 A 1 
HETATM 9 N N2 NAG . . . L 3 44.696 33.992 72.43 1 91.93 ? N2 NAG 335 A 1 
HETATM 10 O O1 NAG . . . L 3 47.13 35.367 71.062 1 100.6 ? O1 NAG 335 A 1 
HETATM 11 O O3 NAG . . . L 3 42.856 36.637 71.715 1 99.39 ? O3 NAG 335 A 1 
HETATM 12 O O4 NAG . . . L 3 42.106 35.159 69.088 1 96.79 ? O4 NAG 335 A 1 
HETATM 13 O O5 NAG . . . L 3 45.68 35.683 69.405 1 98.83 ? O5 NAG 335 A 1 
HETATM 14 O O6 NAG . . . L 3 46.044 35.891 66.945 1 93.49 ? O6 NAG 335 A 1 
HETATM 15 O O7 NAG . . . L 3 45.869 34.877 74.116 1 86.18 ? O7 NAG 335 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#