data_1MQL # _model_server_result.job_id iWwiZ1jL7WHCMkQv2YPpZQ _model_server_result.datetime_utc '2024-12-21 14:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":336}' # _entry.id 1MQL # _exptl.entry_id 1MQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MQL _cell.length_a 147.678 _cell.length_b 147.098 _cell.length_c 251.985 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 251.985 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 U N N ? 5 V N N ? 5 Y N N ? 5 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 52 A CYS 52 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 139 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 14 D CYS 14 1_555 D SG CYS 137 E CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 52 D CYS 52 1_555 C SG CYS 277 D CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf9 C SG CYS 64 D CYS 64 1_555 C SG CYS 76 D CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 C SG CYS 97 D CYS 97 1_555 C SG CYS 139 D CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 C SG CYS 281 D CYS 281 1_555 C SG CYS 305 D CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf12 D SG CYS 144 E CYS 144 1_555 D SG CYS 148 E CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 E SG CYS 14 G CYS 14 1_555 F SG CYS 137 H CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf14 E SG CYS 52 G CYS 52 1_555 E SG CYS 277 G CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 E SG CYS 64 G CYS 64 1_555 E SG CYS 76 G CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf16 E SG CYS 97 G CYS 97 1_555 E SG CYS 139 G CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 E SG CYS 281 G CYS 281 1_555 E SG CYS 305 G CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 F SG CYS 144 H CYS 144 1_555 F SG CYS 148 H CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 218 n n C1 O1 MAN sing 219 n n C1 O5 MAN sing 220 n n C1 H1 MAN sing 221 n n C2 C3 MAN sing 222 n n C2 O2 MAN sing 223 n n C2 H2 MAN sing 224 n n C3 C4 MAN sing 225 n n C3 O3 MAN sing 226 n n C3 H3 MAN sing 227 n n C4 C5 MAN sing 228 n n C4 O4 MAN sing 229 n n C4 H4 MAN sing 230 n n C5 C6 MAN sing 231 n n C5 O5 MAN sing 232 n n C5 H5 MAN sing 233 n n C6 O6 MAN sing 234 n n C6 H61 MAN sing 235 n n C6 H62 MAN sing 236 n n O1 HO1 MAN sing 237 n n O2 HO2 MAN sing 238 n n O3 HO3 MAN sing 239 n n O4 HO4 MAN sing 240 n n O6 HO6 MAN sing 241 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1MQL _atom_sites.fract_transf_matrix[1][1] 0.006771 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003968 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 330 1 NAG NAG . H 4 NDG A 1 331 11 NDG NAG . I 3 NAG A 1 332 12 NAG NAG . J 3 NAG A 1 333 21 NAG NAG . K 4 NDG A 1 334 31 NDG NAG . L 3 NAG A 1 335 22 NAG NAG . M 5 MAN A 1 336 23 MAN MAN . N 5 MAN A 1 337 24 MAN MAN . O 4 NDG B 1 222 32 NDG NAG . P 4 NDG B 1 223 41 NDG NAG . Q 4 NDG D 1 330 1 NDG NAG . R 3 NAG D 1 331 11 NAG NAG . S 4 NDG D 1 332 21 NDG NAG . T 4 NDG D 1 333 22 NDG NAG . U 5 MAN D 1 334 23 MAN MAN . V 5 MAN D 1 335 24 MAN MAN . W 4 NDG E 1 241 41 NDG NAG . X 4 NDG G 1 330 22 NDG NAG . Y 5 MAN G 1 331 23 MAN MAN . Z 5 MAN G 1 332 24 MAN MAN . AA 4 NDG G 1 333 1 NDG NAG . BA 4 NDG G 1 334 11 NDG NAG . CA 3 NAG G 1 335 21 NAG NAG . DA 4 NDG G 1 336 31 NDG NAG . EA 3 NAG H 1 341 41 NAG NAG . FA 6 HOH A 1 338 3 HOH TIP . FA 6 HOH A 2 339 5 HOH TIP . FA 6 HOH A 3 340 10 HOH TIP . FA 6 HOH A 4 341 11 HOH TIP . FA 6 HOH A 5 342 13 HOH TIP . FA 6 HOH A 6 343 16 HOH TIP . FA 6 HOH A 7 344 17 HOH TIP . FA 6 HOH A 8 345 37 HOH TIP . FA 6 HOH A 9 346 42 HOH TIP . FA 6 HOH A 10 347 44 HOH TIP . GA 6 HOH B 1 224 6 HOH TIP . GA 6 HOH B 2 225 12 HOH TIP . GA 6 HOH B 3 226 21 HOH TIP . GA 6 HOH B 4 227 32 HOH TIP . GA 6 HOH B 5 228 45 HOH TIP . HA 6 HOH D 1 336 1 HOH TIP . HA 6 HOH D 2 337 2 HOH TIP . HA 6 HOH D 3 338 7 HOH TIP . HA 6 HOH D 4 339 14 HOH TIP . HA 6 HOH D 5 340 18 HOH TIP . HA 6 HOH D 6 341 20 HOH TIP . HA 6 HOH D 7 342 23 HOH TIP . HA 6 HOH D 8 343 28 HOH TIP . HA 6 HOH D 9 344 31 HOH TIP . HA 6 HOH D 10 345 33 HOH TIP . HA 6 HOH D 11 346 35 HOH TIP . IA 6 HOH E 1 242 4 HOH TIP . IA 6 HOH E 2 243 8 HOH TIP . IA 6 HOH E 3 244 15 HOH TIP . IA 6 HOH E 4 245 24 HOH TIP . IA 6 HOH E 5 246 34 HOH TIP . IA 6 HOH E 6 247 36 HOH TIP . IA 6 HOH E 7 248 38 HOH TIP . JA 6 HOH G 1 337 9 HOH TIP . JA 6 HOH G 2 338 19 HOH TIP . JA 6 HOH G 3 339 22 HOH TIP . JA 6 HOH G 4 340 25 HOH TIP . JA 6 HOH G 5 341 27 HOH TIP . JA 6 HOH G 6 342 29 HOH TIP . JA 6 HOH G 7 343 41 HOH TIP . JA 6 HOH G 8 344 46 HOH TIP . JA 6 HOH G 9 345 47 HOH TIP . KA 6 HOH H 1 342 26 HOH TIP . KA 6 HOH H 2 343 30 HOH TIP . KA 6 HOH H 3 344 39 HOH TIP . KA 6 HOH H 4 345 40 HOH TIP . KA 6 HOH H 5 346 43 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . M 5 41.945 38.205 69.728 1 99.07 ? C1 MAN 336 A 1 HETATM 2 C C2 MAN . . . M 5 41.503 39.26 68.809 1 99.94 ? C2 MAN 336 A 1 HETATM 3 C C3 MAN . . . M 5 41.237 40.568 69.592 1 100.6 ? C3 MAN 336 A 1 HETATM 4 C C4 MAN . . . M 5 40.25 40.368 70.754 1 100.29 ? C4 MAN 336 A 1 HETATM 5 C C5 MAN . . . M 5 40.685 39.14 71.602 1 98.71 ? C5 MAN 336 A 1 HETATM 6 C C6 MAN . . . M 5 39.593 38.714 72.578 1 96.47 ? C6 MAN 336 A 1 HETATM 7 O O1 MAN . . . M 5 43.136 38.57 70.288 1 97.88 ? O1 MAN 336 A 1 HETATM 8 O O2 MAN . . . M 5 40.35 38.761 68.175 1 99.63 ? O2 MAN 336 A 1 HETATM 9 O O3 MAN . . . M 5 40.812 41.617 68.746 1 100.6 ? O3 MAN 336 A 1 HETATM 10 O O4 MAN . . . M 5 40.17 41.529 71.585 1 100.6 ? O4 MAN 336 A 1 HETATM 11 O O5 MAN . . . M 5 40.946 37.978 70.743 1 99.5 ? O5 MAN 336 A 1 HETATM 12 O O6 MAN . . . M 5 39.856 39.014 73.948 1 92.11 ? O6 MAN 336 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #