data_1MQT # _model_server_result.job_id VNtrBepF4kb37J2cvgtSLw _model_server_result.datetime_utc '2025-03-04 23:29:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":284}' # _entry.id 1MQT # _exptl.entry_id 1MQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.688 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL-HEPTADEC-3-ENYL)-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MQT _cell.length_a 318.35 _cell.length_b 349.96 _cell.length_c 371.72 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-MERIC 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 ? 60-meric 60 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-60) A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 (1-5) A,B,C,D,E,F,G,H,I 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I 5 P A,B,C,D,E,F,G,H,I 6 (X0)(1-10,26-30) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.809017 -0.309017 0.5 0.5 -0.809017 0.309017 0.309017 0.5 0.809017 0 0 0 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.5 -0.809017 0.309017 0.809017 0.309017 -0.5 0.309017 0.5 0.809017 0 0 0 3 'point symmetry operation' ? ? -0.309017 -0.5 0.809017 0.5 -0.809017 -0.309017 0.809017 0.309017 0.5 0 0 0 4 'point symmetry operation' ? ? -0.309017 0.5 0.809017 -0.5 -0.809017 0.309017 0.809017 -0.309017 0.5 0 0 0 5 'point symmetry operation' ? ? 0.5 0.809017 0.309017 -0.809017 0.309017 0.5 0.309017 -0.5 0.809017 0 0 0 6 'point symmetry operation' ? ? -0.809017 0.309017 0.5 0.309017 -0.5 0.809017 0.5 0.809017 0.309017 0 0 0 7 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 8 'point symmetry operation' ? ? 0.809017 0.309017 -0.5 0.309017 0.5 0.809017 0.5 -0.809017 0.309017 0 0 0 9 'point symmetry operation' ? ? 0.5 -0.809017 -0.309017 0.809017 0.309017 0.5 -0.309017 -0.5 0.809017 0 0 0 10 'point symmetry operation' ? ? -0.5 -0.809017 0.309017 0.809017 -0.309017 0.5 -0.309017 0.5 0.809017 0 0 0 11 'point symmetry operation' ? ? -0.5 -0.809017 0.309017 -0.809017 0.309017 -0.5 0.309017 -0.5 -0.809017 0 0 0 12 'point symmetry operation' ? ? -0.809017 0.309017 0.5 -0.309017 0.5 -0.809017 -0.5 -0.809017 -0.309017 0 0 0 13 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 0 0 14 'point symmetry operation' ? ? 0.809017 0.309017 -0.5 -0.309017 -0.5 -0.809017 -0.5 0.809017 -0.309017 0 0 0 15 'point symmetry operation' ? ? 0.5 -0.809017 -0.309017 -0.809017 -0.309017 -0.5 0.309017 0.5 -0.809017 0 0 0 16 'point symmetry operation' ? ? 0.309017 0.5 -0.809017 0.5 -0.809017 -0.309017 -0.809017 -0.309017 -0.5 0 0 0 17 'point symmetry operation' ? ? 0.309017 -0.5 -0.809017 -0.5 -0.809017 0.309017 -0.809017 0.309017 -0.5 0 0 0 18 'point symmetry operation' ? ? -0.5 -0.809017 -0.309017 -0.809017 0.309017 0.5 -0.309017 0.5 -0.809017 0 0 0 19 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 20 'point symmetry operation' ? ? -0.5 0.809017 -0.309017 0.809017 0.309017 -0.5 -0.309017 -0.5 -0.809017 0 0 0 21 'point symmetry operation' ? ? -0.5 -0.809017 -0.309017 0.809017 -0.309017 -0.5 0.309017 -0.5 0.809017 0 0 0 22 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 23 'point symmetry operation' ? ? -0.5 0.809017 -0.309017 -0.809017 -0.309017 0.5 0.309017 0.5 0.809017 0 0 0 24 'point symmetry operation' ? ? 0.309017 0.5 -0.809017 -0.5 0.809017 0.309017 0.809017 0.309017 0.5 0 0 0 25 'point symmetry operation' ? ? 0.309017 -0.5 -0.809017 0.5 0.809017 -0.309017 0.809017 -0.309017 0.5 0 0 0 26 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 0 0 0 27 'point symmetry operation' ? ? -0.309017 -0.5 -0.809017 -0.5 0.809017 -0.309017 0.809017 0.309017 -0.5 0 0 0 28 'point symmetry operation' ? ? -0.809017 -0.309017 -0.5 0.309017 0.5 -0.809017 0.5 -0.809017 -0.309017 0 0 0 29 'point symmetry operation' ? ? -0.809017 0.309017 -0.5 0.309017 -0.5 -0.809017 -0.5 -0.809017 0.309017 0 0 0 30 'point symmetry operation' ? ? -0.309017 0.5 -0.809017 -0.5 -0.809017 -0.309017 -0.809017 0.309017 0.5 0 0 0 31 'point symmetry operation' ? ? 0.809017 0.309017 0.5 -0.309017 -0.5 0.809017 0.5 -0.809017 -0.309017 0 0 0 32 'point symmetry operation' ? ? 0.809017 -0.309017 0.5 -0.309017 0.5 0.809017 -0.5 -0.809017 0.309017 0 0 0 33 'point symmetry operation' ? ? 0.309017 -0.5 0.809017 0.5 0.809017 0.309017 -0.809017 0.309017 0.5 0 0 0 34 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 35 'point symmetry operation' ? ? 0.309017 0.5 0.809017 0.5 -0.809017 0.309017 0.809017 0.309017 -0.5 0 0 0 36 'point symmetry operation' ? ? -0.309017 0.5 0.809017 0.5 0.809017 -0.309017 -0.809017 0.309017 -0.5 0 0 0 37 'point symmetry operation' ? ? 0.5 0.809017 0.309017 0.809017 -0.309017 -0.5 -0.309017 0.5 -0.809017 0 0 0 38 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 39 'point symmetry operation' ? ? 0.5 -0.809017 0.309017 -0.809017 -0.309017 0.5 -0.309017 -0.5 -0.809017 0 0 0 40 'point symmetry operation' ? ? -0.309017 -0.5 0.809017 -0.5 0.809017 0.309017 -0.809017 -0.309017 -0.5 0 0 0 41 'point symmetry operation' ? ? -0.5 0.809017 0.309017 -0.809017 -0.309017 -0.5 -0.309017 -0.5 0.809017 0 0 0 42 'point symmetry operation' ? ? 0.5 0.809017 -0.309017 -0.809017 0.309017 -0.5 -0.309017 0.5 0.809017 0 0 0 43 'point symmetry operation' ? ? 0.809017 -0.309017 -0.5 -0.309017 0.5 -0.809017 0.5 0.809017 0.309017 0 0 0 44 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 0 0 0 45 'point symmetry operation' ? ? -0.809017 -0.309017 0.5 -0.309017 -0.5 -0.809017 0.5 -0.809017 0.309017 0 0 0 46 'point symmetry operation' ? ? 0.809017 -0.309017 0.5 0.309017 -0.5 -0.809017 0.5 0.809017 -0.309017 0 0 0 47 'point symmetry operation' ? ? 0.309017 -0.5 0.809017 -0.5 -0.809017 -0.309017 0.809017 -0.309017 -0.5 0 0 0 48 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 0 0 49 'point symmetry operation' ? ? 0.309017 0.5 0.809017 -0.5 0.809017 -0.309017 -0.809017 -0.309017 0.5 0 0 0 50 'point symmetry operation' ? ? 0.809017 0.309017 0.5 0.309017 0.5 -0.809017 -0.5 0.809017 0.309017 0 0 0 51 'point symmetry operation' ? ? -0.309017 0.5 -0.809017 0.5 0.809017 0.309017 0.809017 -0.309017 -0.5 0 0 0 52 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 0 0 0 53 'point symmetry operation' ? ? -0.309017 -0.5 -0.809017 0.5 -0.809017 0.309017 -0.809017 -0.309017 0.5 0 0 0 54 'point symmetry operation' ? ? -0.809017 -0.309017 -0.5 -0.309017 -0.5 0.809017 -0.5 0.809017 0.309017 0 0 0 55 'point symmetry operation' ? ? -0.809017 0.309017 -0.5 -0.309017 0.5 0.809017 0.5 0.809017 -0.309017 0 0 0 56 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 0 0 0 57 'point symmetry operation' ? ? -0.809017 -0.309017 0.5 0.309017 0.5 0.809017 -0.5 0.809017 -0.309017 0 0 0 58 'point symmetry operation' ? ? -0.5 0.809017 0.309017 0.809017 0.309017 0.5 0.309017 0.5 -0.809017 0 0 0 59 'point symmetry operation' ? ? 0.5 0.809017 -0.309017 0.809017 -0.309017 0.5 0.309017 -0.5 -0.809017 0 0 0 60 'point symmetry operation' ? ? 0.809017 -0.309017 -0.5 0.309017 -0.5 0.809017 -0.5 -0.809017 -0.309017 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H51 N O3' _chem_comp.formula_weight 425.688 _chem_comp.id SPL _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL-HEPTADEC-3-ENYL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CERAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SPL sing 290 n n C1 C2 SPL sing 291 n n C1 H11 SPL sing 292 n n C1 H12 SPL sing 293 n n O1 HO1 SPL sing 294 n n C2 N2 SPL sing 295 n n C2 C3 SPL sing 296 n n C2 H2 SPL sing 297 n n N2 C19 SPL sing 298 n n N2 HN2 SPL sing 299 n n C3 O3 SPL sing 300 n n C3 C4 SPL sing 301 n n C3 H3 SPL sing 302 n n O3 HO3 SPL sing 303 n n C4 C5 SPL doub 304 e n C4 H4 SPL sing 305 n n C5 C6 SPL sing 306 n n C5 H5 SPL sing 307 n n C6 C7 SPL sing 308 n n C6 H61 SPL sing 309 n n C6 H62 SPL sing 310 n n C7 C8 SPL sing 311 n n C7 H71 SPL sing 312 n n C7 H72 SPL sing 313 n n C8 C9 SPL sing 314 n n C8 H81 SPL sing 315 n n C8 H82 SPL sing 316 n n C9 C10 SPL sing 317 n n C9 H91 SPL sing 318 n n C9 H92 SPL sing 319 n n C10 C11 SPL sing 320 n n C10 H101 SPL sing 321 n n C10 H102 SPL sing 322 n n C11 C12 SPL sing 323 n n C11 H111 SPL sing 324 n n C11 H112 SPL sing 325 n n C12 C13 SPL sing 326 n n C12 H121 SPL sing 327 n n C12 H122 SPL sing 328 n n C13 C14 SPL sing 329 n n C13 H131 SPL sing 330 n n C13 H132 SPL sing 331 n n C14 C15 SPL sing 332 n n C14 H141 SPL sing 333 n n C14 H142 SPL sing 334 n n C15 C16 SPL sing 335 n n C15 H151 SPL sing 336 n n C15 H152 SPL sing 337 n n C16 C17 SPL sing 338 n n C16 H161 SPL sing 339 n n C16 H162 SPL sing 340 n n C17 C18 SPL sing 341 n n C17 H171 SPL sing 342 n n C17 H172 SPL sing 343 n n C18 H181 SPL sing 344 n n C18 H182 SPL sing 345 n n C18 H183 SPL sing 346 n n C19 O19 SPL doub 347 n n C19 C20 SPL sing 348 n n C20 C21 SPL sing 349 n n C20 H201 SPL sing 350 n n C20 H202 SPL sing 351 n n C21 C22 SPL sing 352 n n C21 H211 SPL sing 353 n n C21 H212 SPL sing 354 n n C22 C23 SPL sing 355 n n C22 H221 SPL sing 356 n n C22 H222 SPL sing 357 n n C23 C24 SPL sing 358 n n C23 H231 SPL sing 359 n n C23 H232 SPL sing 360 n n C24 C25 SPL sing 361 n n C24 H241 SPL sing 362 n n C24 H242 SPL sing 363 n n C25 C26 SPL sing 364 n n C25 H251 SPL sing 365 n n C25 H252 SPL sing 366 n n C26 H261 SPL sing 367 n n C26 H262 SPL sing 368 n n C26 H263 SPL sing 369 n n # _atom_sites.entry_id 1MQT _atom_sites.fract_transf_matrix[1][1] 0.003141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 SPL A 1 284 40 SPL SPL . F 6 HOH A 1 285 1 HOH HOH . F 6 HOH A 2 286 2 HOH HOH . F 6 HOH A 3 287 3 HOH HOH . F 6 HOH A 4 288 7 HOH HOH . F 6 HOH A 5 289 8 HOH HOH . F 6 HOH A 6 290 9 HOH HOH . F 6 HOH A 7 291 16 HOH HOH . F 6 HOH A 8 292 17 HOH HOH . F 6 HOH A 9 293 18 HOH HOH . F 6 HOH A 10 294 22 HOH HOH . F 6 HOH A 11 295 24 HOH HOH . F 6 HOH A 12 296 25 HOH HOH . F 6 HOH A 13 297 26 HOH HOH . G 6 HOH B 1 262 10 HOH HOH . G 6 HOH B 2 263 11 HOH HOH . G 6 HOH B 3 264 19 HOH HOH . G 6 HOH B 4 265 20 HOH HOH . G 6 HOH B 5 266 28 HOH HOH . G 6 HOH B 6 267 29 HOH HOH . H 6 HOH C 1 239 5 HOH HOH . H 6 HOH C 2 240 6 HOH HOH . H 6 HOH C 3 241 12 HOH HOH . H 6 HOH C 4 242 13 HOH HOH . H 6 HOH C 5 243 14 HOH HOH . H 6 HOH C 6 244 15 HOH HOH . H 6 HOH C 7 245 21 HOH HOH . H 6 HOH C 8 246 23 HOH HOH . H 6 HOH C 9 247 27 HOH HOH . H 6 HOH C 10 248 30 HOH HOH . I 6 HOH D 1 70 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SPL . . . E 5 35.923 8.35 126.582 1 42.51 ? C1 SPL 284 A 1 HETATM 2 O O1 SPL . . . E 5 35.34 9.267 127.529 1 39.66 ? O1 SPL 284 A 1 HETATM 3 C C2 SPL . . . E 5 35.425 6.905 126.422 1 44.31 ? C2 SPL 284 A 1 HETATM 4 N N2 SPL . . . E 5 34.334 6.266 127.171 1 47.08 ? N2 SPL 284 A 1 HETATM 5 C C3 SPL . . . E 5 36.199 6.11 125.349 1 42.32 ? C3 SPL 284 A 1 HETATM 6 O O3 SPL . . . E 5 37.173 5.588 126.352 1 43.66 ? O3 SPL 284 A 1 HETATM 7 C C4 SPL . . . E 5 37.22 6.747 124.439 1 39.06 ? C4 SPL 284 A 1 HETATM 8 C C5 SPL . . . E 5 37.706 5.953 123.425 1 35.08 ? C5 SPL 284 A 1 HETATM 9 C C6 SPL . . . E 5 39.111 5.497 123.687 1 30.42 ? C6 SPL 284 A 1 HETATM 10 C C7 SPL . . . E 5 39.224 3.98 123.367 1 25.11 ? C7 SPL 284 A 1 HETATM 11 C C8 SPL . . . E 5 40.625 3.482 123.62 1 20.59 ? C8 SPL 284 A 1 HETATM 12 C C9 SPL . . . E 5 40.703 1.993 123.329 1 16.94 ? C9 SPL 284 A 1 HETATM 13 C C10 SPL . . . E 5 42.163 1.213 123.54 1 15.58 ? C10 SPL 284 A 1 HETATM 14 C C11 SPL . . . E 5 42.016 -0.438 123.572 1 14.5 ? C11 SPL 284 A 1 HETATM 15 C C12 SPL . . . E 5 43.244 -1.097 123.752 1 14.55 ? C12 SPL 284 A 1 HETATM 16 C C13 SPL . . . E 5 43.972 -1.61 122.505 1 14.13 ? C13 SPL 284 A 1 HETATM 17 C C14 SPL . . . E 5 45.251 -2.366 122.872 1 13.09 ? C14 SPL 284 A 1 HETATM 18 C C15 SPL . . . E 5 46.001 -2.89 121.645 1 11.47 ? C15 SPL 284 A 1 HETATM 19 C C16 SPL . . . E 5 47.28 -3.645 122.023 1 9.51 ? C16 SPL 284 A 1 HETATM 20 C C17 SPL . . . E 5 48.034 -4.171 120.802 1 7.44 ? C17 SPL 284 A 1 HETATM 21 C C18 SPL . . . E 5 49.32 -4.93 121.179 1 4.49 ? C18 SPL 284 A 1 HETATM 22 C C19 SPL . . . E 5 33.988 4.976 126.935 1 48.66 ? C19 SPL 284 A 1 HETATM 23 O O19 SPL . . . E 5 34.599 4.077 127.639 1 48.41 ? O19 SPL 284 A 1 HETATM 24 C C20 SPL . . . E 5 32.945 4.509 125.919 1 50.12 ? C20 SPL 284 A 1 HETATM 25 C C21 SPL . . . E 5 32.054 3.192 126.059 1 51.61 ? C21 SPL 284 A 1 HETATM 26 C C22 SPL . . . E 5 32.198 2.24 124.909 1 52.58 ? C22 SPL 284 A 1 HETATM 27 C C23 SPL . . . E 5 32.423 0.778 125.401 1 53.32 ? C23 SPL 284 A 1 HETATM 28 C C24 SPL . . . E 5 33.333 -0.014 124.437 1 54.62 ? C24 SPL 284 A 1 HETATM 29 C C25 SPL . . . E 5 33.59 -1.475 124.875 1 55.25 ? C25 SPL 284 A 1 HETATM 30 C C26 SPL . . . E 5 34.828 -2.094 124.188 1 56.39 ? C26 SPL 284 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 30 #