data_1MR2
#
_model_server_result.job_id            99hV-oDo1ZRCfhRvPUCwDg 
_model_server_result.datetime_utc      '2024-10-16 10:38:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mr2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    1MR2 
#
_exptl.entry_id    1MR2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              425.228 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1MR2 
_cell.length_a            63.894 
_cell.length_b            63.894 
_cell.length_c            182.059 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MR2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 30.343167 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 76 A ALA 76 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc2 C O3B A12 . A A12 301 1_555 B MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
#
_chem_comp.formula           'C11 H17 N5 O9 P2' 
_chem_comp.formula_weight    425.228 
_chem_comp.id                A12 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ALPHA,BETA-METHYLENEADENOSINE-5'-DIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B A12 doub 1 n n 
PB O2B A12 sing 2 n n 
PB O3B A12 sing 3 n n 
PB C3A A12 sing 4 n n 
O2B HOB2 A12 sing 5 n n 
O3B HXT A12 sing 6 n n 
PA O1A A12 doub 7 n n 
PA O2A A12 sing 8 n n 
PA C3A A12 sing 9 n n 
PA O5' A12 sing 10 n n 
O2A HOA2 A12 sing 11 n n 
C3A H3A1 A12 sing 12 n n 
C3A H3A2 A12 sing 13 n n 
O5' C5' A12 sing 14 n n 
C5' C4' A12 sing 15 n n 
C5' "H5'1" A12 sing 16 n n 
C5' "H5'2" A12 sing 17 n n 
C4' O4' A12 sing 18 n n 
C4' C3' A12 sing 19 n n 
C4' H4' A12 sing 20 n n 
O4' C1' A12 sing 21 n n 
C3' O3' A12 sing 22 n n 
C3' C2' A12 sing 23 n n 
C3' H3' A12 sing 24 n n 
O3' HO3' A12 sing 25 n n 
C2' O2' A12 sing 26 n n 
C2' C1' A12 sing 27 n n 
C2' H2' A12 sing 28 n n 
O2' HO2' A12 sing 29 n n 
C1' N9 A12 sing 30 n n 
C1' H1' A12 sing 31 n n 
N9 C8 A12 sing 32 n y 
N9 C4 A12 sing 33 n y 
C8 N7 A12 doub 34 n y 
C8 H8 A12 sing 35 n n 
N7 C5 A12 sing 36 n y 
C5 C6 A12 sing 37 n y 
C5 C4 A12 doub 38 n y 
C6 N6 A12 sing 39 n n 
C6 N1 A12 doub 40 n y 
N6 HN61 A12 sing 41 n n 
N6 HN62 A12 sing 42 n n 
N1 C2 A12 sing 43 n y 
C2 N3 A12 doub 44 n y 
C2 H2 A12 sing 45 n n 
N3 C4 A12 sing 46 n y 
#
_atom_sites.entry_id                     1MR2 
_atom_sites.fract_transf_matrix[1][1]    0.015651 
_atom_sites.fract_transf_matrix[1][2]    0.009036 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005493 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 401 401 MN MN . 
C 3 A12 A 1 301 301 A12 A12 . 
D 4 HOH A 1 402 1 HOH HOH . 
D 4 HOH A 2 403 2 HOH HOH . 
D 4 HOH A 3 404 3 HOH HOH . 
D 4 HOH A 4 405 4 HOH HOH . 
D 4 HOH A 5 406 5 HOH HOH . 
D 4 HOH A 6 407 6 HOH HOH . 
D 4 HOH A 7 408 7 HOH HOH . 
D 4 HOH A 8 409 8 HOH HOH . 
D 4 HOH A 9 410 9 HOH HOH . 
D 4 HOH A 10 411 10 HOH HOH . 
D 4 HOH A 11 412 11 HOH HOH . 
D 4 HOH A 12 413 12 HOH HOH . 
D 4 HOH A 13 414 13 HOH HOH . 
D 4 HOH A 14 415 14 HOH HOH . 
D 4 HOH A 15 416 15 HOH HOH . 
D 4 HOH A 16 417 16 HOH HOH . 
D 4 HOH A 17 418 17 HOH HOH . 
D 4 HOH A 18 419 18 HOH HOH . 
D 4 HOH A 19 420 19 HOH HOH . 
D 4 HOH A 20 421 20 HOH HOH . 
D 4 HOH A 21 422 21 HOH HOH . 
D 4 HOH A 22 423 22 HOH HOH . 
D 4 HOH A 23 424 23 HOH HOH . 
D 4 HOH A 24 425 24 HOH HOH . 
D 4 HOH A 25 426 25 HOH HOH . 
D 4 HOH A 26 427 26 HOH HOH . 
D 4 HOH A 27 428 27 HOH HOH . 
D 4 HOH A 28 429 28 HOH HOH . 
D 4 HOH A 29 430 29 HOH HOH . 
D 4 HOH A 30 431 30 HOH HOH . 
D 4 HOH A 31 432 31 HOH HOH . 
D 4 HOH A 32 433 32 HOH HOH . 
D 4 HOH A 33 434 34 HOH HOH . 
D 4 HOH A 34 435 35 HOH HOH . 
D 4 HOH A 35 436 36 HOH HOH . 
D 4 HOH A 36 437 37 HOH HOH . 
D 4 HOH A 37 438 38 HOH HOH . 
D 4 HOH A 38 439 39 HOH HOH . 
D 4 HOH A 39 440 40 HOH HOH . 
D 4 HOH A 40 441 41 HOH HOH . 
D 4 HOH A 41 442 42 HOH HOH . 
D 4 HOH A 42 443 43 HOH HOH . 
D 4 HOH A 43 444 44 HOH HOH . 
D 4 HOH A 44 445 45 HOH HOH . 
D 4 HOH A 45 446 46 HOH HOH . 
D 4 HOH A 46 447 47 HOH HOH . 
D 4 HOH A 47 448 48 HOH HOH . 
D 4 HOH A 48 449 49 HOH HOH . 
D 4 HOH A 49 450 50 HOH HOH . 
D 4 HOH A 50 451 51 HOH HOH . 
D 4 HOH A 51 452 52 HOH HOH . 
D 4 HOH A 52 453 53 HOH HOH . 
D 4 HOH A 53 454 55 HOH HOH . 
D 4 HOH A 54 455 56 HOH HOH . 
D 4 HOH A 55 456 57 HOH HOH . 
D 4 HOH A 56 457 58 HOH HOH . 
D 4 HOH A 57 458 59 HOH HOH . 
D 4 HOH A 58 459 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB A12 . . . C 3 23.63 20.169 3.699 1 71.65 ? PB A12 301 A 1 
HETATM 2 O O1B A12 . . . C 3 24.724 19.139 3.963 1 72.87 ? O1B A12 301 A 1 
HETATM 3 O O2B A12 . . . C 3 22.861 20.521 5.043 1 70.83 ? O2B A12 301 A 1 
HETATM 4 O O3B A12 . . . C 3 22.637 19.454 2.667 1 67.51 ? O3B A12 301 A 1 
HETATM 5 P PA A12 . . . C 3 25.286 21.734 1.945 1 78.75 ? PA A12 301 A 1 
HETATM 6 O O1A A12 . . . C 3 26.082 20.562 1.229 1 77.89 ? O1A A12 301 A 1 
HETATM 7 O O2A A12 . . . C 3 24.103 22.385 1.141 1 79.44 ? O2A A12 301 A 1 
HETATM 8 C C3A A12 . . . C 3 24.67 21.271 3.339 1 74.7 ? C3A A12 301 A 1 
HETATM 9 O O5' A12 . . . C 3 26.344 22.925 2.029 1 75.2 ? O5' A12 301 A 1 
HETATM 10 C C5' A12 . . . C 3 26.147 24.309 1.671 1 70.93 ? C5' A12 301 A 1 
HETATM 11 C C4' A12 . . . C 3 27.472 25.095 1.913 1 67.49 ? C4' A12 301 A 1 
HETATM 12 O O4' A12 . . . C 3 28.249 24.74 3.054 1 64.85 ? O4' A12 301 A 1 
HETATM 13 C C3' A12 . . . C 3 28.325 24.799 0.665 1 68.33 ? C3' A12 301 A 1 
HETATM 14 O O3' A12 . . . C 3 28.642 26.017 0.063 1 70.26 ? O3' A12 301 A 1 
HETATM 15 C C2' A12 . . . C 3 29.643 24.237 1.19 1 66.48 ? C2' A12 301 A 1 
HETATM 16 O O2' A12 . . . C 3 30.747 25.097 1.458 1 68.19 ? O2' A12 301 A 1 
HETATM 17 C C1' A12 . . . C 3 29.296 23.875 2.643 1 62.82 ? C1' A12 301 A 1 
HETATM 18 N N9 A12 . . . C 3 29.829 22.851 3.537 1 57.86 ? N9 A12 301 A 1 
HETATM 19 C C8 A12 . . . C 3 29.064 21.782 3.938 1 57.29 ? C8 A12 301 A 1 
HETATM 20 N N7 A12 . . . C 3 29.802 20.981 4.765 1 56.62 ? N7 A12 301 A 1 
HETATM 21 C C5 A12 . . . C 3 31.043 21.57 4.871 1 55.03 ? C5 A12 301 A 1 
HETATM 22 C C6 A12 . . . C 3 32.172 21.22 5.558 1 53.01 ? C6 A12 301 A 1 
HETATM 23 N N6 A12 . . . C 3 32.127 20.077 6.293 1 50.13 ? N6 A12 301 A 1 
HETATM 24 N N1 A12 . . . C 3 33.323 22.015 5.495 1 53.3 ? N1 A12 301 A 1 
HETATM 25 C C2 A12 . . . C 3 33.378 23.187 4.744 1 53.35 ? C2 A12 301 A 1 
HETATM 26 N N3 A12 . . . C 3 32.225 23.528 4.053 1 54 ? N3 A12 301 A 1 
HETATM 27 C C4 A12 . . . C 3 31.078 22.754 4.107 1 55.21 ? C4 A12 301 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#