data_1MRF
#
_model_server_result.job_id            0U5E0E5UDSqimZz81YjNGQ 
_model_server_result.datetime_utc      '2024-11-06 00:49:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mrf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":901}' 
#
_entry.id    1MRF 
#
_exptl.entry_id    1MRF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              332.207 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYINOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MRF 
_cell.length_a            66.2 
_cell.length_b            75.5 
_cell.length_c            104.6 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,C,D,E,F 2 1 
B,G 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 66.2 37.75 52.3 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf2 A SG CYS 139 L CYS 134 1_555 A SG CYS 199 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf4 B SG CYS 143 H CYS 142 1_555 B SG CYS 198 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc1 A OD2 ASP 156 L ASP 151 1_555 C ZN ZN . L ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc2 A ND1 HIS 194 L HIS 189 1_555 C ZN ZN . L ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc3 C ZN ZN . L ZN 600 1_555 D N1 IMD . L IMD 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? 
metalc ? metalc4 C ZN ZN . L ZN 600 1_555 B OD2 ASP 210 H ASP 220 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? 
#
_chem_comp.formula           'C10 H13 N4 O7 P' 
_chem_comp.formula_weight    332.207 
_chem_comp.id                DI 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              "2'-DEOXYINOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP3 P DI sing 83 n n 
OP3 HOP3 DI sing 84 n n 
P OP1 DI doub 85 n n 
P OP2 DI sing 86 n n 
P O5' DI sing 87 n n 
OP2 HOP2 DI sing 88 n n 
O5' C5' DI sing 89 n n 
C5' C4' DI sing 90 n n 
C5' H5' DI sing 91 n n 
C5' "H5''" DI sing 92 n n 
C4' O4' DI sing 93 n n 
C4' C3' DI sing 94 n n 
C4' H4' DI sing 95 n n 
O4' C1' DI sing 96 n n 
C3' O3' DI sing 97 n n 
C3' C2' DI sing 98 n n 
C3' H3' DI sing 99 n n 
O3' HO3' DI sing 100 n n 
C2' C1' DI sing 101 n n 
C2' H2' DI sing 102 n n 
C2' "H2''" DI sing 103 n n 
C1' N9 DI sing 104 n n 
C1' H1' DI sing 105 n n 
N9 C8 DI sing 106 n y 
N9 C4 DI sing 107 n y 
C8 N7 DI doub 108 n y 
C8 H8 DI sing 109 n n 
N7 C5 DI sing 110 n y 
C5 C6 DI sing 111 n n 
C5 C4 DI doub 112 n y 
C6 O6 DI doub 113 n n 
C6 N1 DI sing 114 n n 
N1 C2 DI sing 115 n n 
N1 H1 DI sing 116 n n 
C2 N3 DI doub 117 n n 
C2 H2 DI sing 118 n n 
N3 C4 DI sing 119 n n 
#
_atom_sites.entry_id                     1MRF 
_atom_sites.fract_transf_matrix[1][1]    0.015106 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013245 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN L 1 600 600 ZN ZN . 
D 4 IMD L 1 902 902 IMD IMD . 
E 5 DI L 1 901 901 DI OIP . 
F 6 HOH L 1 607 607 HOH HOH . 
F 6 HOH L 2 608 608 HOH HOH . 
F 6 HOH L 3 609 609 HOH HOH . 
F 6 HOH L 4 610 610 HOH HOH . 
F 6 HOH L 5 612 612 HOH HOH . 
F 6 HOH L 6 613 613 HOH HOH . 
F 6 HOH L 7 614 614 HOH HOH . 
F 6 HOH L 8 616 616 HOH HOH . 
F 6 HOH L 9 620 620 HOH HOH . 
F 6 HOH L 10 621 621 HOH HOH . 
F 6 HOH L 11 623 623 HOH HOH . 
F 6 HOH L 12 625 625 HOH HOH . 
F 6 HOH L 13 627 627 HOH HOH . 
F 6 HOH L 14 630 630 HOH HOH . 
F 6 HOH L 15 635 635 HOH HOH . 
F 6 HOH L 16 636 636 HOH HOH . 
F 6 HOH L 17 639 639 HOH HOH . 
F 6 HOH L 18 640 640 HOH HOH . 
F 6 HOH L 19 643 643 HOH HOH . 
F 6 HOH L 20 644 644 HOH HOH . 
F 6 HOH L 21 645 645 HOH HOH . 
F 6 HOH L 22 646 646 HOH HOH . 
F 6 HOH L 23 647 647 HOH HOH . 
F 6 HOH L 24 648 648 HOH HOH . 
F 6 HOH L 25 649 649 HOH HOH . 
F 6 HOH L 26 651 651 HOH HOH . 
F 6 HOH L 27 652 652 HOH HOH . 
F 6 HOH L 28 654 654 HOH HOH . 
F 6 HOH L 29 655 655 HOH HOH . 
F 6 HOH L 30 657 657 HOH HOH . 
F 6 HOH L 31 659 659 HOH HOH . 
F 6 HOH L 32 660 660 HOH HOH . 
F 6 HOH L 33 662 662 HOH HOH . 
F 6 HOH L 34 663 663 HOH HOH . 
F 6 HOH L 35 664 664 HOH HOH . 
F 6 HOH L 36 666 666 HOH HOH . 
F 6 HOH L 37 667 667 HOH HOH . 
F 6 HOH L 38 668 668 HOH HOH . 
F 6 HOH L 39 669 669 HOH HOH . 
F 6 HOH L 40 670 670 HOH HOH . 
F 6 HOH L 41 672 672 HOH HOH . 
F 6 HOH L 42 673 673 HOH HOH . 
F 6 HOH L 43 674 674 HOH HOH . 
F 6 HOH L 44 676 676 HOH HOH . 
F 6 HOH L 45 677 677 HOH HOH . 
F 6 HOH L 46 678 678 HOH HOH . 
F 6 HOH L 47 679 679 HOH HOH . 
F 6 HOH L 48 680 680 HOH HOH . 
F 6 HOH L 49 681 681 HOH HOH . 
F 6 HOH L 50 682 682 HOH HOH . 
G 6 HOH H 1 601 601 HOH HOH . 
G 6 HOH H 2 602 602 HOH HOH . 
G 6 HOH H 3 603 603 HOH HOH . 
G 6 HOH H 4 604 604 HOH HOH . 
G 6 HOH H 5 605 605 HOH HOH . 
G 6 HOH H 6 606 606 HOH HOH . 
G 6 HOH H 7 611 611 HOH HOH . 
G 6 HOH H 8 615 615 HOH HOH . 
G 6 HOH H 9 617 617 HOH HOH . 
G 6 HOH H 10 618 618 HOH HOH . 
G 6 HOH H 11 619 619 HOH HOH . 
G 6 HOH H 12 622 622 HOH HOH . 
G 6 HOH H 13 624 624 HOH HOH . 
G 6 HOH H 14 626 626 HOH HOH . 
G 6 HOH H 15 628 628 HOH HOH . 
G 6 HOH H 16 629 629 HOH HOH . 
G 6 HOH H 17 631 631 HOH HOH . 
G 6 HOH H 18 632 632 HOH HOH . 
G 6 HOH H 19 633 633 HOH HOH . 
G 6 HOH H 20 634 634 HOH HOH . 
G 6 HOH H 21 637 637 HOH HOH . 
G 6 HOH H 22 638 638 HOH HOH . 
G 6 HOH H 23 641 641 HOH HOH . 
G 6 HOH H 24 642 642 HOH HOH . 
G 6 HOH H 25 650 650 HOH HOH . 
G 6 HOH H 26 653 653 HOH HOH . 
G 6 HOH H 27 656 656 HOH HOH . 
G 6 HOH H 28 658 658 HOH HOH . 
G 6 HOH H 29 661 661 HOH HOH . 
G 6 HOH H 30 665 665 HOH HOH . 
G 6 HOH H 31 671 671 HOH HOH . 
G 6 HOH H 32 675 675 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OP3 DI . . . E 5 -15.361 15.452 51.245 1 42.15 ? OP3 DI 901 L 1 
HETATM 2 P P DI . . . E 5 -16.409 15.975 52.146 1 42.55 ? P DI 901 L 1 
HETATM 3 O OP1 DI . . . E 5 -16.679 17.417 52.004 1 45.75 ? OP1 DI 901 L 1 
HETATM 4 O OP2 DI . . . E 5 -16.352 15.542 53.552 1 47.61 ? OP2 DI 901 L 1 
HETATM 5 O O5' DI . . . E 5 -17.75 15.248 51.645 1 45.75 ? O5' DI 901 L 1 
HETATM 6 C C5' DI . . . E 5 -19.065 15.763 51.944 1 40.95 ? C5' DI 901 L 1 
HETATM 7 C C4' DI . . . E 5 -19.793 15.9 50.615 1 43.8 ? C4' DI 901 L 1 
HETATM 8 O O4' DI . . . E 5 -19.631 17.094 49.85 1 44.35 ? O4' DI 901 L 1 
HETATM 9 C C3' DI . . . E 5 -19.851 14.766 49.608 1 43.63 ? C3' DI 901 L 1 
HETATM 10 O O3' DI . . . E 5 -21.122 14.127 49.48 1 49.73 ? O3' DI 901 L 1 
HETATM 11 C C2' DI . . . E 5 -19.128 15.236 48.365 1 39.14 ? C2' DI 901 L 1 
HETATM 12 C C1' DI . . . E 5 -18.906 16.685 48.701 1 38.18 ? C1' DI 901 L 1 
HETATM 13 N N9 DI . . . E 5 -17.632 17.352 48.459 1 39.08 ? N9 DI 901 L 1 
HETATM 14 C C8 DI . . . E 5 -16.432 16.806 48.653 1 41.01 ? C8 DI 901 L 1 
HETATM 15 N N7 DI . . . E 5 -15.502 17.522 48.021 1 40.93 ? N7 DI 901 L 1 
HETATM 16 C C5 DI . . . E 5 -16.126 18.535 47.434 1 36.12 ? C5 DI 901 L 1 
HETATM 17 C C6 DI . . . E 5 -15.563 19.836 46.887 1 35.07 ? C6 DI 901 L 1 
HETATM 18 O O6 DI . . . E 5 -14.386 20.194 46.817 1 34.48 ? O6 DI 901 L 1 
HETATM 19 N N1 DI . . . E 5 -16.593 20.697 46.543 1 36.28 ? N1 DI 901 L 1 
HETATM 20 C C2 DI . . . E 5 -17.942 20.466 46.69 1 32.75 ? C2 DI 901 L 1 
HETATM 21 N N3 DI . . . E 5 -18.363 19.371 47.307 1 36.02 ? N3 DI 901 L 1 
HETATM 22 C C4 DI . . . E 5 -17.485 18.433 47.705 1 37.04 ? C4 DI 901 L 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#