data_1MRJ # _model_server_result.job_id LCOfQHuU05LL2jVv8YZzSw _model_server_result.datetime_utc '2025-03-06 03:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mrj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1MRJ # _exptl.entry_id 1MRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MRJ _cell.length_a 38.24 _cell.length_b 76.74 _cell.length_c 79.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 1MRJ _atom_sites.fract_transf_matrix[1][1] 0.026151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013031 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 300 300 ADN ADN . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . C 3 HOH A 63 363 63 HOH HOH . C 3 HOH A 64 364 64 HOH HOH . C 3 HOH A 65 365 65 HOH HOH . C 3 HOH A 66 366 66 HOH HOH . C 3 HOH A 67 367 67 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 69 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 71 HOH HOH . C 3 HOH A 72 372 72 HOH HOH . C 3 HOH A 73 373 73 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 75 HOH HOH . C 3 HOH A 76 376 76 HOH HOH . C 3 HOH A 77 377 77 HOH HOH . C 3 HOH A 78 378 78 HOH HOH . C 3 HOH A 79 379 79 HOH HOH . C 3 HOH A 80 380 80 HOH HOH . C 3 HOH A 81 381 81 HOH HOH . C 3 HOH A 82 382 82 HOH HOH . C 3 HOH A 83 383 83 HOH HOH . C 3 HOH A 84 384 86 HOH HOH . C 3 HOH A 85 385 87 HOH HOH . C 3 HOH A 86 386 88 HOH HOH . C 3 HOH A 87 387 89 HOH HOH . C 3 HOH A 88 388 90 HOH HOH . C 3 HOH A 89 389 91 HOH HOH . C 3 HOH A 90 390 92 HOH HOH . C 3 HOH A 91 391 93 HOH HOH . C 3 HOH A 92 392 94 HOH HOH . C 3 HOH A 93 393 95 HOH HOH . C 3 HOH A 94 394 96 HOH HOH . C 3 HOH A 95 395 97 HOH HOH . C 3 HOH A 96 396 98 HOH HOH . C 3 HOH A 97 397 99 HOH HOH . C 3 HOH A 98 398 100 HOH HOH . C 3 HOH A 99 399 101 HOH HOH . C 3 HOH A 100 400 102 HOH HOH . C 3 HOH A 101 401 103 HOH HOH . C 3 HOH A 102 402 104 HOH HOH . C 3 HOH A 103 403 105 HOH HOH . C 3 HOH A 104 404 106 HOH HOH . C 3 HOH A 105 405 107 HOH HOH . C 3 HOH A 106 406 108 HOH HOH . C 3 HOH A 107 407 109 HOH HOH . C 3 HOH A 108 408 110 HOH HOH . C 3 HOH A 109 409 111 HOH HOH . C 3 HOH A 110 410 112 HOH HOH . C 3 HOH A 111 411 113 HOH HOH . C 3 HOH A 112 412 114 HOH HOH . C 3 HOH A 113 413 115 HOH HOH . C 3 HOH A 114 414 116 HOH HOH . C 3 HOH A 115 415 117 HOH HOH . C 3 HOH A 116 416 118 HOH HOH . C 3 HOH A 117 417 120 HOH HOH . C 3 HOH A 118 418 121 HOH HOH . C 3 HOH A 119 419 122 HOH HOH . C 3 HOH A 120 420 123 HOH HOH . C 3 HOH A 121 421 124 HOH HOH . C 3 HOH A 122 422 125 HOH HOH . C 3 HOH A 123 423 126 HOH HOH . C 3 HOH A 124 424 127 HOH HOH . C 3 HOH A 125 425 128 HOH HOH . C 3 HOH A 126 426 129 HOH HOH . C 3 HOH A 127 427 130 HOH HOH . C 3 HOH A 128 428 131 HOH HOH . C 3 HOH A 129 429 132 HOH HOH . C 3 HOH A 130 430 133 HOH HOH . C 3 HOH A 131 431 134 HOH HOH . C 3 HOH A 132 432 135 HOH HOH . C 3 HOH A 133 433 136 HOH HOH . C 3 HOH A 134 434 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' ADN . . . B 2 13.85 -5.685 40.106 1 0 ? C1' ADN 300 A 1 HETATM 2 N N9 ADN . . . B 2 14.579 -5.092 39.771 1 13.58 ? N9 ADN 300 A 1 HETATM 3 C C8 ADN . . . B 2 15.788 -4.972 40.297 1 15.45 ? C8 ADN 300 A 1 HETATM 4 N N7 ADN . . . B 2 16.233 -3.73 40.418 1 20.38 ? N7 ADN 300 A 1 HETATM 5 C C5 ADN . . . B 2 15.314 -2.993 39.637 1 16.51 ? C5 ADN 300 A 1 HETATM 6 C C6 ADN . . . B 2 15.08 -1.599 39.416 1 13.52 ? C6 ADN 300 A 1 HETATM 7 N N6 ADN . . . B 2 15.948 -0.611 39.622 1 11.82 ? N6 ADN 300 A 1 HETATM 8 N N1 ADN . . . B 2 13.896 -1.239 38.92 1 9.42 ? N1 ADN 300 A 1 HETATM 9 C C2 ADN . . . B 2 13.01 -2.14 38.629 1 8.81 ? C2 ADN 300 A 1 HETATM 10 N N3 ADN . . . B 2 13.114 -3.492 38.69 1 11.97 ? N3 ADN 300 A 1 HETATM 11 C C4 ADN . . . B 2 14.307 -3.845 39.229 1 33.49 ? C4 ADN 300 A 1 HETATM 12 H H8 ADN . . . B 2 16.31 -5.86 40.627 1 0 ? H8 ADN 300 A 1 HETATM 13 H HN61 ADN . . . B 2 16.842 -0.87 40.034 1 0 ? HN61 ADN 300 A 1 HETATM 14 H HN62 ADN . . . B 2 15.785 0.344 39.339 1 0 ? HN62 ADN 300 A 1 HETATM 15 H H2 ADN . . . B 2 12.092 -1.71 38.277 1 0 ? H2 ADN 300 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #