data_1MRL # _model_server_result.job_id Vf7QVvHbUG-0PudjUJGa_Q _model_server_result.datetime_utc '2024-11-28 10:15:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mrl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 1MRL # _exptl.entry_id 1MRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 690.847 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MRL _cell.length_a 82.914 _cell.length_b 90.905 _cell.length_c 104.529 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C34 H50 N4 O9 S' _chem_comp.formula_weight 690.847 _chem_comp.id DOL _chem_comp.mon_nstd_flag . _chem_comp.name 5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DALFOPRISTIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 C6 DOL doub 83 n n C6 N5 DOL sing 84 n n C6 C8 DOL sing 85 n n N5 C4 DOL sing 86 n n N5 C1 DOL sing 87 n n C4 C3 DOL sing 88 n n C4 HC41 DOL sing 89 n n C4 HC42 DOL sing 90 n n C3 C2 DOL sing 91 n n C3 HC31 DOL sing 92 n n C3 HC3A DOL sing 93 n n C2 S39 DOL sing 94 n n C2 C1 DOL sing 95 n n C2 HC2 DOL sing 96 n n S39 O41 DOL doub 97 n n S39 O40 DOL doub 98 n n S39 C42 DOL sing 99 n n C42 C43 DOL sing 100 n n C42 H421 DOL sing 101 n n C42 H422 DOL sing 102 n n C43 N44 DOL sing 103 n n C43 H431 DOL sing 104 n n C43 H432 DOL sing 105 n n N44 C47 DOL sing 106 n n N44 C45 DOL sing 107 n n C47 C48 DOL sing 108 n n C47 H471 DOL sing 109 n n C47 H472 DOL sing 110 n n C48 H481 DOL sing 111 n n C48 H482 DOL sing 112 n n C48 H483 DOL sing 113 n n C45 C46 DOL sing 114 n n C45 H451 DOL sing 115 n n C45 H452 DOL sing 116 n n C46 H461 DOL sing 117 n n C46 H462 DOL sing 118 n n C46 H463 DOL sing 119 n n C1 C37 DOL sing 120 n n C1 HC1 DOL sing 121 n n C8 C12 DOL doub 122 n y C8 N9 DOL sing 123 n y C12 O11 DOL sing 124 n y C12 HC12 DOL sing 125 n n O11 C10 DOL sing 126 n y N9 C10 DOL doub 127 n y C10 C13 DOL sing 128 n n C13 C14 DOL sing 129 n n C13 H131 DOL sing 130 n n C13 H132 DOL sing 131 n n C14 O15 DOL doub 132 n n C14 C16 DOL sing 133 n n C16 C17 DOL sing 134 n n C16 H161 DOL sing 135 n n C16 H162 DOL sing 136 n n C17 O18 DOL sing 137 n n C17 C19 DOL sing 138 n n C17 HC17 DOL sing 139 n n O18 HO18 DOL sing 140 n n C19 C20 DOL doub 141 e n C19 HC19 DOL sing 142 n n C20 C21 DOL sing 143 n n C20 C22 DOL sing 144 n n C21 H211 DOL sing 145 n n C21 H212 DOL sing 146 n n C21 H213 DOL sing 147 n n C22 C23 DOL doub 148 e n C22 HC22 DOL sing 149 n n C23 C24 DOL sing 150 n n C23 HC23 DOL sing 151 n n C24 N25 DOL sing 152 n n C24 H241 DOL sing 153 n n C24 H242 DOL sing 154 n n N25 C26 DOL sing 155 n n N25 HN25 DOL sing 156 n n C26 O27 DOL doub 157 n n C26 C28 DOL sing 158 n n C28 C29 DOL doub 159 e n C28 HC28 DOL sing 160 n n C29 C30 DOL sing 161 n n C29 HC29 DOL sing 162 n n C30 C31 DOL sing 163 n n C30 C32 DOL sing 164 n n C30 HC30 DOL sing 165 n n C31 H311 DOL sing 166 n n C31 H312 DOL sing 167 n n C31 H313 DOL sing 168 n n C32 C33 DOL sing 169 n n C32 O36 DOL sing 170 n n C32 HC32 DOL sing 171 n n C33 C35 DOL sing 172 n n C33 C34 DOL sing 173 n n C33 HC33 DOL sing 174 n n C35 H351 DOL sing 175 n n C35 H352 DOL sing 176 n n C35 H353 DOL sing 177 n n C34 H341 DOL sing 178 n n C34 H342 DOL sing 179 n n C34 H343 DOL sing 180 n n O36 C37 DOL sing 181 n n C37 O38 DOL doub 182 n n # _atom_sites.entry_id 1MRL _atom_sites.fract_transf_matrix[1][1] 0.012061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 DOL A 1 300 300 DOL DAL . E 2 DOL B 1 301 300 DOL DAL . F 2 DOL C 1 302 300 DOL DAL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 DOL . . . F 2 42.075 18.617 58.482 1 53.88 ? O7 DOL 302 C 1 HETATM 2 C C6 DOL . . . F 2 43.055 18.825 59.45 1 53.88 ? C6 DOL 302 C 1 HETATM 3 N N5 DOL . . . F 2 43.437 17.726 60.351 1 53.88 ? N5 DOL 302 C 1 HETATM 4 C C4 DOL . . . F 2 44.518 18.331 61.132 1 53.88 ? C4 DOL 302 C 1 HETATM 5 C C3 DOL . . . F 2 45.797 17.92 60.394 1 53.88 ? C3 DOL 302 C 1 HETATM 6 C C2 DOL . . . F 2 45.373 16.817 59.443 1 53.88 ? C2 DOL 302 C 1 HETATM 7 S S39 DOL . . . F 2 46.586 15.523 59.504 1 53.88 ? S39 DOL 302 C 1 HETATM 8 O O41 DOL . . . F 2 46.869 15.099 61.192 1 53.88 ? O41 DOL 302 C 1 HETATM 9 O O40 DOL . . . F 2 46.019 14.127 58.592 1 53.88 ? O40 DOL 302 C 1 HETATM 10 C C42 DOL . . . F 2 48.086 16.147 58.762 1 53.88 ? C42 DOL 302 C 1 HETATM 11 C C43 DOL . . . F 2 48.84 17.001 59.774 1 53.88 ? C43 DOL 302 C 1 HETATM 12 N N44 DOL . . . F 2 50.055 16.243 60 1 53.88 ? N44 DOL 302 C 1 HETATM 13 C C47 DOL . . . F 2 51.346 16.849 59.695 1 53.88 ? C47 DOL 302 C 1 HETATM 14 C C48 DOL . . . F 2 51.776 17.778 60.812 1 53.88 ? C48 DOL 302 C 1 HETATM 15 C C45 DOL . . . F 2 49.942 14.882 60.508 1 53.88 ? C45 DOL 302 C 1 HETATM 16 C C46 DOL . . . F 2 51.037 14.582 61.506 1 53.88 ? C46 DOL 302 C 1 HETATM 17 C C1 DOL . . . F 2 44.081 16.418 60.113 1 53.88 ? C1 DOL 302 C 1 HETATM 18 C C8 DOL . . . F 2 43.882 20.071 59.672 1 53.88 ? C8 DOL 302 C 1 HETATM 19 C C12 DOL . . . F 2 45.174 20.322 60.465 1 53.88 ? C12 DOL 302 C 1 HETATM 20 O O11 DOL . . . F 2 45.209 21.74 60.728 1 53.88 ? O11 DOL 302 C 1 HETATM 21 N N9 DOL . . . F 2 43.144 21.277 59.581 1 53.88 ? N9 DOL 302 C 1 HETATM 22 C C10 DOL . . . F 2 43.998 22.26 60.174 1 53.88 ? C10 DOL 302 C 1 HETATM 23 C C13 DOL . . . F 2 43.464 23.667 60.174 1 53.88 ? C13 DOL 302 C 1 HETATM 24 C C14 DOL . . . F 2 41.996 23.288 59.977 1 53.88 ? C14 DOL 302 C 1 HETATM 25 O O15 DOL . . . F 2 41.628 22.671 58.74 1 53.88 ? O15 DOL 302 C 1 HETATM 26 C C16 DOL . . . F 2 40.921 23.45 61.047 1 53.88 ? C16 DOL 302 C 1 HETATM 27 C C17 DOL . . . F 2 39.69 22.618 60.672 1 53.88 ? C17 DOL 302 C 1 HETATM 28 O O18 DOL . . . F 2 38.526 23.125 61.33 1 53.88 ? O18 DOL 302 C 1 HETATM 29 C C19 DOL . . . F 2 39.91 21.179 61.115 1 53.88 ? C19 DOL 302 C 1 HETATM 30 C C20 DOL . . . F 2 38.992 20.163 60.445 1 53.88 ? C20 DOL 302 C 1 HETATM 31 C C21 DOL . . . F 2 37.934 20.589 59.434 1 53.88 ? C21 DOL 302 C 1 HETATM 32 C C22 DOL . . . F 2 38.912 18.803 61.124 1 53.88 ? C22 DOL 302 C 1 HETATM 33 C C23 DOL . . . F 2 37.832 17.887 60.569 1 53.88 ? C23 DOL 302 C 1 HETATM 34 C C24 DOL . . . F 2 37.94 16.596 61.362 1 53.88 ? C24 DOL 302 C 1 HETATM 35 N N25 DOL . . . F 2 39.326 16.198 61.277 1 53.88 ? N25 DOL 302 C 1 HETATM 36 C C26 DOL . . . F 2 39.726 14.82 61.41 1 53.88 ? C26 DOL 302 C 1 HETATM 37 O O27 DOL . . . F 2 38.717 13.858 61.712 1 53.88 ? O27 DOL 302 C 1 HETATM 38 C C28 DOL . . . F 2 41.137 14.536 61.874 1 53.88 ? C28 DOL 302 C 1 HETATM 39 C C29 DOL . . . F 2 41.521 13.129 61.454 1 53.88 ? C29 DOL 302 C 1 HETATM 40 C C30 DOL . . . F 2 42.941 12.881 61.936 1 53.88 ? C30 DOL 302 C 1 HETATM 41 C C31 DOL . . . F 2 43.028 11.432 62.416 1 53.88 ? C31 DOL 302 C 1 HETATM 42 C C32 DOL . . . F 2 44.071 13.303 60.965 1 53.88 ? C32 DOL 302 C 1 HETATM 43 C C33 DOL . . . F 2 44.962 12.114 60.577 1 53.88 ? C33 DOL 302 C 1 HETATM 44 C C35 DOL . . . F 2 46.161 11.929 61.505 1 53.88 ? C35 DOL 302 C 1 HETATM 45 C C34 DOL . . . F 2 44.175 10.814 60.418 1 53.88 ? C34 DOL 302 C 1 HETATM 46 O O36 DOL . . . F 2 43.655 13.876 59.708 1 53.88 ? O36 DOL 302 C 1 HETATM 47 C C37 DOL . . . F 2 43.238 15.253 59.575 1 53.88 ? C37 DOL 302 C 1 HETATM 48 O O38 DOL . . . F 2 41.983 15.509 58.931 1 53.88 ? O38 DOL 302 C 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #