data_1MSK # _model_server_result.job_id XoWfukmRWcJb8-tUKKIiVw _model_server_result.datetime_utc '2025-02-27 16:00:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1msk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1301}' # _entry.id 1MSK # _exptl.entry_id 1MSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MSK _cell.length_a 38.86 _cell.length_b 62.36 _cell.length_c 140.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 283 n n N HN1 SAM sing 284 n n N HN2 SAM sing 285 n n CA C SAM sing 286 n n CA CB SAM sing 287 n n CA HA SAM sing 288 n n C O SAM doub 289 n n C OXT SAM sing 290 n n CB CG SAM sing 291 n n CB HB1 SAM sing 292 n n CB HB2 SAM sing 293 n n CG SD SAM sing 294 n n CG HG1 SAM sing 295 n n CG HG2 SAM sing 296 n n SD CE SAM sing 297 n n SD C5' SAM sing 298 n n CE HE1 SAM sing 299 n n CE HE2 SAM sing 300 n n CE HE3 SAM sing 301 n n C5' C4' SAM sing 302 n n C5' "H5'1" SAM sing 303 n n C5' "H5'2" SAM sing 304 n n C4' O4' SAM sing 305 n n C4' C3' SAM sing 306 n n C4' H4' SAM sing 307 n n O4' C1' SAM sing 308 n n C3' O3' SAM sing 309 n n C3' C2' SAM sing 310 n n C3' H3' SAM sing 311 n n O3' HO3' SAM sing 312 n n C2' O2' SAM sing 313 n n C2' C1' SAM sing 314 n n C2' H2' SAM sing 315 n n O2' HO2' SAM sing 316 n n C1' N9 SAM sing 317 n n C1' H1' SAM sing 318 n n N9 C8 SAM sing 319 n y N9 C4 SAM sing 320 n y C8 N7 SAM doub 321 n y C8 H8 SAM sing 322 n n N7 C5 SAM sing 323 n y C5 C6 SAM sing 324 n y C5 C4 SAM doub 325 n y C6 N6 SAM sing 326 n n C6 N1 SAM doub 327 n y N6 HN61 SAM sing 328 n n N6 HN62 SAM sing 329 n n N1 C2 SAM sing 330 n y C2 N3 SAM doub 331 n y C2 H2 SAM sing 332 n n N3 C4 SAM sing 333 n y # _atom_sites.entry_id 1MSK _atom_sites.fract_transf_matrix[1][1] 0.025733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 1302 1302 ACT ACT . C 3 SAM A 1 1301 1301 SAM SAM . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2024 2024 HOH HOH . D 4 HOH A 23 2026 2026 HOH HOH . D 4 HOH A 24 2027 2027 HOH HOH . D 4 HOH A 25 2028 2028 HOH HOH . D 4 HOH A 26 2029 2029 HOH HOH . D 4 HOH A 27 2030 2030 HOH HOH . D 4 HOH A 28 2031 2031 HOH HOH . D 4 HOH A 29 2032 2032 HOH HOH . D 4 HOH A 30 2033 2033 HOH HOH . D 4 HOH A 31 2034 2034 HOH HOH . D 4 HOH A 32 2035 2035 HOH HOH . D 4 HOH A 33 2036 2036 HOH HOH . D 4 HOH A 34 2037 2037 HOH HOH . D 4 HOH A 35 2038 2038 HOH HOH . D 4 HOH A 36 2039 2039 HOH HOH . D 4 HOH A 37 2040 2040 HOH HOH . D 4 HOH A 38 2041 2041 HOH HOH . D 4 HOH A 39 2042 2042 HOH HOH . D 4 HOH A 40 2043 2043 HOH HOH . D 4 HOH A 41 2046 2046 HOH HOH . D 4 HOH A 42 2048 2048 HOH HOH . D 4 HOH A 43 2049 2049 HOH HOH . D 4 HOH A 44 2050 2050 HOH HOH . D 4 HOH A 45 2051 2051 HOH HOH . D 4 HOH A 46 2052 2052 HOH HOH . D 4 HOH A 47 2053 2053 HOH HOH . D 4 HOH A 48 2054 2054 HOH HOH . D 4 HOH A 49 2055 2055 HOH HOH . D 4 HOH A 50 2056 2056 HOH HOH . D 4 HOH A 51 2057 2057 HOH HOH . D 4 HOH A 52 2058 2058 HOH HOH . D 4 HOH A 53 2059 2059 HOH HOH . D 4 HOH A 54 2060 2060 HOH HOH . D 4 HOH A 55 2061 2061 HOH HOH . D 4 HOH A 56 2062 2062 HOH HOH . D 4 HOH A 57 2063 2063 HOH HOH . D 4 HOH A 58 2064 2064 HOH HOH . D 4 HOH A 59 2065 2065 HOH HOH . D 4 HOH A 60 2066 2066 HOH HOH . D 4 HOH A 61 2067 2067 HOH HOH . D 4 HOH A 62 2068 2068 HOH HOH . D 4 HOH A 63 2069 2069 HOH HOH . D 4 HOH A 64 2070 2070 HOH HOH . D 4 HOH A 65 2072 2072 HOH HOH . D 4 HOH A 66 2073 2073 HOH HOH . D 4 HOH A 67 2074 2074 HOH HOH . D 4 HOH A 68 2075 2075 HOH HOH . D 4 HOH A 69 2076 2076 HOH HOH . D 4 HOH A 70 2077 2077 HOH HOH . D 4 HOH A 71 2079 2079 HOH HOH . D 4 HOH A 72 2080 2080 HOH HOH . D 4 HOH A 73 2081 2081 HOH HOH . D 4 HOH A 74 2082 2082 HOH HOH . D 4 HOH A 75 2083 2083 HOH HOH . D 4 HOH A 76 2084 2084 HOH HOH . D 4 HOH A 77 2086 2086 HOH HOH . D 4 HOH A 78 2087 2087 HOH HOH . D 4 HOH A 79 2088 2088 HOH HOH . D 4 HOH A 80 2089 2089 HOH HOH . D 4 HOH A 81 2090 2090 HOH HOH . D 4 HOH A 82 2091 2091 HOH HOH . D 4 HOH A 83 2092 2092 HOH HOH . D 4 HOH A 84 2093 2093 HOH HOH . D 4 HOH A 85 2094 2094 HOH HOH . D 4 HOH A 86 2095 2095 HOH HOH . D 4 HOH A 87 2096 2096 HOH HOH . D 4 HOH A 88 2097 2097 HOH HOH . D 4 HOH A 89 2099 2099 HOH HOH . D 4 HOH A 90 2101 2101 HOH HOH . D 4 HOH A 91 2102 2102 HOH HOH . D 4 HOH A 92 2103 2103 HOH HOH . D 4 HOH A 93 2104 2104 HOH HOH . D 4 HOH A 94 2105 2105 HOH HOH . D 4 HOH A 95 2106 2106 HOH HOH . D 4 HOH A 96 2107 2107 HOH HOH . D 4 HOH A 97 2108 2108 HOH HOH . D 4 HOH A 98 2110 2110 HOH HOH . D 4 HOH A 99 2111 2111 HOH HOH . D 4 HOH A 100 2112 2112 HOH HOH . D 4 HOH A 101 2113 2113 HOH HOH . D 4 HOH A 102 2114 2114 HOH HOH . D 4 HOH A 103 2115 2115 HOH HOH . D 4 HOH A 104 2116 2116 HOH HOH . D 4 HOH A 105 2117 2117 HOH HOH . D 4 HOH A 106 2118 2118 HOH HOH . D 4 HOH A 107 2119 2119 HOH HOH . D 4 HOH A 108 2122 2122 HOH HOH . D 4 HOH A 109 2123 2123 HOH HOH . D 4 HOH A 110 2124 2124 HOH HOH . D 4 HOH A 111 2125 2125 HOH HOH . D 4 HOH A 112 2126 2126 HOH HOH . D 4 HOH A 113 2127 2127 HOH HOH . D 4 HOH A 114 2128 2128 HOH HOH . D 4 HOH A 115 2129 2129 HOH HOH . D 4 HOH A 116 2130 2130 HOH HOH . D 4 HOH A 117 2132 2132 HOH HOH . D 4 HOH A 118 2133 2133 HOH HOH . D 4 HOH A 119 2135 2135 HOH HOH . D 4 HOH A 120 2136 2136 HOH HOH . D 4 HOH A 121 2137 2137 HOH HOH . D 4 HOH A 122 2138 2138 HOH HOH . D 4 HOH A 123 2139 2139 HOH HOH . D 4 HOH A 124 2140 2140 HOH HOH . D 4 HOH A 125 2141 2141 HOH HOH . D 4 HOH A 126 2142 2142 HOH HOH . D 4 HOH A 127 2144 2144 HOH HOH . D 4 HOH A 128 2145 2145 HOH HOH . D 4 HOH A 129 2146 2146 HOH HOH . D 4 HOH A 130 2147 2147 HOH HOH . D 4 HOH A 131 2150 2150 HOH HOH . D 4 HOH A 132 2151 2151 HOH HOH . D 4 HOH A 133 2152 2152 HOH HOH . D 4 HOH A 134 2153 2153 HOH HOH . D 4 HOH A 135 2154 2154 HOH HOH . D 4 HOH A 136 2155 2155 HOH HOH . D 4 HOH A 137 2156 2156 HOH HOH . D 4 HOH A 138 2157 2157 HOH HOH . D 4 HOH A 139 2158 2158 HOH HOH . D 4 HOH A 140 2159 2159 HOH HOH . D 4 HOH A 141 2160 2160 HOH HOH . D 4 HOH A 142 2161 2161 HOH HOH . D 4 HOH A 143 2163 2163 HOH HOH . D 4 HOH A 144 2166 2166 HOH HOH . D 4 HOH A 145 2167 2167 HOH HOH . D 4 HOH A 146 2168 2168 HOH HOH . D 4 HOH A 147 2169 2169 HOH HOH . D 4 HOH A 148 2170 2170 HOH HOH . D 4 HOH A 149 2173 2173 HOH HOH . D 4 HOH A 150 2174 2174 HOH HOH . D 4 HOH A 151 2175 2175 HOH HOH . D 4 HOH A 152 2176 2176 HOH HOH . D 4 HOH A 153 2177 2177 HOH HOH . D 4 HOH A 154 2178 2178 HOH HOH . D 4 HOH A 155 2180 2180 HOH HOH . D 4 HOH A 156 2181 2181 HOH HOH . D 4 HOH A 157 2183 2183 HOH HOH . D 4 HOH A 158 2184 2184 HOH HOH . D 4 HOH A 159 2185 2185 HOH HOH . D 4 HOH A 160 2186 2186 HOH HOH . D 4 HOH A 161 2187 2187 HOH HOH . D 4 HOH A 162 2188 2188 HOH HOH . D 4 HOH A 163 2191 2191 HOH HOH . D 4 HOH A 164 2192 2192 HOH HOH . D 4 HOH A 165 2193 2193 HOH HOH . D 4 HOH A 166 2194 2194 HOH HOH . D 4 HOH A 167 2195 2195 HOH HOH . D 4 HOH A 168 2196 2196 HOH HOH . D 4 HOH A 169 2197 2197 HOH HOH . D 4 HOH A 170 2198 2198 HOH HOH . D 4 HOH A 171 2200 2200 HOH HOH . D 4 HOH A 172 2204 2204 HOH HOH . D 4 HOH A 173 2205 2205 HOH HOH . D 4 HOH A 174 2206 2206 HOH HOH . D 4 HOH A 175 2208 2208 HOH HOH . D 4 HOH A 176 2209 2209 HOH HOH . D 4 HOH A 177 2210 2210 HOH HOH . D 4 HOH A 178 2213 2213 HOH HOH . D 4 HOH A 179 2214 2214 HOH HOH . D 4 HOH A 180 2215 2215 HOH HOH . D 4 HOH A 181 2217 2217 HOH HOH . D 4 HOH A 182 2218 2218 HOH HOH . D 4 HOH A 183 2219 2219 HOH HOH . D 4 HOH A 184 2220 2220 HOH HOH . D 4 HOH A 185 2221 2221 HOH HOH . D 4 HOH A 186 2222 2222 HOH HOH . D 4 HOH A 187 2223 2223 HOH HOH . D 4 HOH A 188 2224 2224 HOH HOH . D 4 HOH A 189 2225 2225 HOH HOH . D 4 HOH A 190 2226 2226 HOH HOH . D 4 HOH A 191 2231 2231 HOH HOH . D 4 HOH A 192 2232 2232 HOH HOH . D 4 HOH A 193 2233 2233 HOH HOH . D 4 HOH A 194 2235 2235 HOH HOH . D 4 HOH A 195 2237 2237 HOH HOH . D 4 HOH A 196 2238 2238 HOH HOH . D 4 HOH A 197 2242 2242 HOH HOH . D 4 HOH A 198 2244 2244 HOH HOH . D 4 HOH A 199 2245 2245 HOH HOH . D 4 HOH A 200 2246 2246 HOH HOH . D 4 HOH A 201 2247 2247 HOH HOH . D 4 HOH A 202 2248 2248 HOH HOH . D 4 HOH A 203 2249 2249 HOH HOH . D 4 HOH A 204 2250 2250 HOH HOH . D 4 HOH A 205 2251 2251 HOH HOH . D 4 HOH A 206 2252 2252 HOH HOH . D 4 HOH A 207 2253 2253 HOH HOH . D 4 HOH A 208 2254 2254 HOH HOH . D 4 HOH A 209 2255 2255 HOH HOH . D 4 HOH A 210 2257 2257 HOH HOH . D 4 HOH A 211 2259 2259 HOH HOH . D 4 HOH A 212 2261 2261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 10.328 21.137 14.002 0.97 16.14 ? N SAM 1301 A 1 HETATM 2 C CA SAM . . . C 3 9.653 19.908 13.745 0.97 17.99 ? CA SAM 1301 A 1 HETATM 3 C C SAM . . . C 3 8.525 20.148 12.8 0.97 18.29 ? C SAM 1301 A 1 HETATM 4 O O SAM . . . C 3 7.985 21.269 12.799 0.97 19.56 ? O SAM 1301 A 1 HETATM 5 O OXT SAM . . . C 3 8.138 19.226 12.045 0.97 19.85 ? OXT SAM 1301 A 1 HETATM 6 C CB SAM . . . C 3 9.032 19.304 15.014 0.97 18.95 ? CB SAM 1301 A 1 HETATM 7 C CG SAM . . . C 3 8.074 18.137 14.739 0.97 17.5 ? CG SAM 1301 A 1 HETATM 8 S SD SAM . . . C 3 8.985 16.65 14.227 0.97 17.22 ? SD SAM 1301 A 1 HETATM 9 C CE SAM . . . C 3 7.687 15.576 13.634 0.97 14.36 ? CE SAM 1301 A 1 HETATM 10 C C5' SAM . . . C 3 9.51 15.782 15.792 0.97 16.93 ? C5' SAM 1301 A 1 HETATM 11 C C4' SAM . . . C 3 8.349 15.06 16.558 0.97 16.33 ? C4' SAM 1301 A 1 HETATM 12 O O4' SAM . . . C 3 8.008 13.745 16.015 0.97 15.86 ? O4' SAM 1301 A 1 HETATM 13 C C3' SAM . . . C 3 8.659 14.828 18.039 0.97 16.41 ? C3' SAM 1301 A 1 HETATM 14 O O3' SAM . . . C 3 8.44 16.026 18.809 0.97 16.05 ? O3' SAM 1301 A 1 HETATM 15 C C2' SAM . . . C 3 7.761 13.623 18.388 0.97 11.36 ? C2' SAM 1301 A 1 HETATM 16 O O2' SAM . . . C 3 6.42 13.985 18.663 0.97 13.5 ? O2' SAM 1301 A 1 HETATM 17 C C1' SAM . . . C 3 7.758 12.785 17.103 0.97 15.69 ? C1' SAM 1301 A 1 HETATM 18 N N9 SAM . . . C 3 8.864 11.782 17.037 0.97 15.67 ? N9 SAM 1301 A 1 HETATM 19 C C8 SAM . . . C 3 10.012 11.917 16.309 0.97 15.79 ? C8 SAM 1301 A 1 HETATM 20 N N7 SAM . . . C 3 10.835 10.912 16.411 0.97 18.83 ? N7 SAM 1301 A 1 HETATM 21 C C5 SAM . . . C 3 10.18 10.039 17.265 0.97 17.44 ? C5 SAM 1301 A 1 HETATM 22 C C6 SAM . . . C 3 10.534 8.714 17.743 0.97 16.84 ? C6 SAM 1301 A 1 HETATM 23 N N6 SAM . . . C 3 11.639 8.066 17.367 0.97 15.9 ? N6 SAM 1301 A 1 HETATM 24 N N1 SAM . . . C 3 9.631 8.147 18.545 0.97 16.9 ? N1 SAM 1301 A 1 HETATM 25 C C2 SAM . . . C 3 8.489 8.753 18.862 0.97 15.62 ? C2 SAM 1301 A 1 HETATM 26 N N3 SAM . . . C 3 8.066 9.959 18.472 0.97 16.62 ? N3 SAM 1301 A 1 HETATM 27 C C4 SAM . . . C 3 8.968 10.554 17.67 0.97 16.3 ? C4 SAM 1301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #