data_1MSM # _model_server_result.job_id ZhckCdxVVuz-Ft-P8KZfkA _model_server_result.datetime_utc '2025-01-11 14:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1msm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1MSM # _exptl.entry_id 1MSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.718 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MSM _cell.length_a 57.67 _cell.length_b 85.819 _cell.length_c 46.528 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H37 N3 O5 S' _chem_comp.formula_weight 575.718 _chem_comp.id JE2 _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-3-{(2S,3S)-2-hydroxy-3-[(3-hydroxy-2-methylbenzoyl)amino]-4-phenylbutanoyl}-5,5-dimethyl-N-(2-methylbenzyl)-1,3-thiazolidine-4-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms JE-2147;AG1776;KNI-764 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 JE2 sing 173 n n C1 C3 JE2 doub 174 n y C1 C7 JE2 sing 175 n y O2 HO2 JE2 sing 176 n n C3 C4 JE2 sing 177 n y C3 HC3 JE2 sing 178 n n C4 C5 JE2 doub 179 n y C4 HC4 JE2 sing 180 n n C5 C6 JE2 sing 181 n y C5 HC5 JE2 sing 182 n n C6 C7 JE2 doub 183 n y C6 C9 JE2 sing 184 n n C7 C8 JE2 sing 185 n n C8 HC81 JE2 sing 186 n n C8 HC82 JE2 sing 187 n n C8 HC83 JE2 sing 188 n n C9 O10 JE2 doub 189 n n C9 N11 JE2 sing 190 n n N11 C12 JE2 sing 191 n n N11 H11 JE2 sing 192 n n C12 C13 JE2 sing 193 n n C12 C20 JE2 sing 194 n n C12 H12 JE2 sing 195 n n C13 C14 JE2 sing 196 n n C13 H131 JE2 sing 197 n n C13 H132 JE2 sing 198 n n C14 C15 JE2 doub 199 n y C14 C19 JE2 sing 200 n y C15 C16 JE2 sing 201 n y C15 H15 JE2 sing 202 n n C16 C17 JE2 doub 203 n y C16 H16 JE2 sing 204 n n C17 C18 JE2 sing 205 n y C17 H17 JE2 sing 206 n n C18 C19 JE2 doub 207 n y C18 H18 JE2 sing 208 n n C19 H19 JE2 sing 209 n n C20 O21 JE2 sing 210 n n C20 C22 JE2 sing 211 n n C20 H20 JE2 sing 212 n n O21 H21 JE2 sing 213 n n C22 O23 JE2 doub 214 n n C22 N24 JE2 sing 215 n n N24 C25 JE2 sing 216 n n N24 C30 JE2 sing 217 n n C25 S26 JE2 sing 218 n n C25 H251 JE2 sing 219 n n C25 H252 JE2 sing 220 n n S26 C27 JE2 sing 221 n n C27 C28 JE2 sing 222 n n C27 C29 JE2 sing 223 n n C27 C30 JE2 sing 224 n n C28 H281 JE2 sing 225 n n C28 H282 JE2 sing 226 n n C28 H283 JE2 sing 227 n n C29 H291 JE2 sing 228 n n C29 H292 JE2 sing 229 n n C29 H293 JE2 sing 230 n n C30 C31 JE2 sing 231 n n C30 H30 JE2 sing 232 n n C31 O32 JE2 doub 233 n n C31 N33 JE2 sing 234 n n N33 C34 JE2 sing 235 n n N33 H33 JE2 sing 236 n n C34 C35 JE2 sing 237 n n C34 H341 JE2 sing 238 n n C34 H342 JE2 sing 239 n n C35 C36 JE2 doub 240 n y C35 C40 JE2 sing 241 n y C36 C37 JE2 sing 242 n y C36 C41 JE2 sing 243 n n C37 C38 JE2 doub 244 n y C37 H37 JE2 sing 245 n n C38 C39 JE2 sing 246 n y C38 H38 JE2 sing 247 n n C39 C40 JE2 doub 248 n y C39 H39 JE2 sing 249 n n C40 H40 JE2 sing 250 n n C41 H411 JE2 sing 251 n n C41 H412 JE2 sing 252 n n C41 H413 JE2 sing 253 n n # _atom_sites.entry_id 1MSM _atom_sites.fract_transf_matrix[1][1] 0.01734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JE2 B 1 1001 1 JE2 764 . D 3 HOH A 1 100 3 HOH HOH . D 3 HOH A 2 101 5 HOH HOH . D 3 HOH A 3 102 6 HOH HOH . D 3 HOH A 4 103 9 HOH HOH . D 3 HOH A 5 104 15 HOH HOH . D 3 HOH A 6 105 16 HOH HOH . D 3 HOH A 7 106 17 HOH HOH . D 3 HOH A 8 107 18 HOH HOH . D 3 HOH A 9 108 23 HOH HOH . D 3 HOH A 10 109 26 HOH HOH . D 3 HOH A 11 110 27 HOH HOH . D 3 HOH A 12 111 32 HOH HOH . D 3 HOH A 13 112 33 HOH HOH . D 3 HOH A 14 113 34 HOH HOH . D 3 HOH A 15 114 40 HOH HOH . D 3 HOH A 16 115 41 HOH HOH . D 3 HOH A 17 116 42 HOH HOH . D 3 HOH A 18 117 43 HOH HOH . D 3 HOH A 19 118 45 HOH HOH . D 3 HOH A 20 119 46 HOH HOH . D 3 HOH A 21 120 49 HOH HOH . D 3 HOH A 22 121 50 HOH HOH . D 3 HOH A 23 122 51 HOH HOH . D 3 HOH A 24 123 52 HOH HOH . D 3 HOH A 25 124 55 HOH HOH . D 3 HOH A 26 125 59 HOH HOH . D 3 HOH A 27 126 60 HOH HOH . D 3 HOH A 28 127 61 HOH HOH . D 3 HOH A 29 128 65 HOH HOH . D 3 HOH A 30 129 67 HOH HOH . D 3 HOH A 31 130 68 HOH HOH . D 3 HOH A 32 131 69 HOH HOH . D 3 HOH A 33 132 78 HOH HOH . D 3 HOH A 34 133 79 HOH HOH . D 3 HOH A 35 134 82 HOH HOH . D 3 HOH A 36 135 84 HOH HOH . D 3 HOH A 37 136 85 HOH HOH . D 3 HOH A 38 137 86 HOH HOH . D 3 HOH A 39 138 87 HOH HOH . D 3 HOH A 40 139 90 HOH HOH . D 3 HOH A 41 140 92 HOH HOH . D 3 HOH A 42 141 95 HOH HOH . D 3 HOH A 43 142 97 HOH HOH . D 3 HOH A 44 143 108 HOH HOH . D 3 HOH A 45 144 109 HOH HOH . D 3 HOH A 46 145 110 HOH HOH . D 3 HOH A 47 146 114 HOH HOH . D 3 HOH A 48 147 115 HOH HOH . D 3 HOH A 49 148 117 HOH HOH . D 3 HOH A 50 149 125 HOH HOH . D 3 HOH A 51 150 126 HOH HOH . D 3 HOH A 52 151 127 HOH HOH . D 3 HOH A 53 152 128 HOH HOH . D 3 HOH A 54 153 129 HOH HOH . D 3 HOH A 55 154 130 HOH HOH . D 3 HOH A 56 155 131 HOH HOH . D 3 HOH A 57 156 132 HOH HOH . D 3 HOH A 58 157 140 HOH HOH . D 3 HOH A 59 158 141 HOH HOH . D 3 HOH A 60 159 142 HOH HOH . D 3 HOH A 61 160 144 HOH HOH . D 3 HOH A 62 161 145 HOH HOH . E 3 HOH B 1 1002 1 HOH HOH . E 3 HOH B 2 1003 2 HOH HOH . E 3 HOH B 3 1004 4 HOH HOH . E 3 HOH B 4 1005 7 HOH HOH . E 3 HOH B 5 1006 8 HOH HOH . E 3 HOH B 6 1007 10 HOH HOH . E 3 HOH B 7 1008 11 HOH HOH . E 3 HOH B 8 1009 12 HOH HOH . E 3 HOH B 9 1010 13 HOH HOH . E 3 HOH B 10 1011 14 HOH HOH . E 3 HOH B 11 1012 19 HOH HOH . E 3 HOH B 12 1013 20 HOH HOH . E 3 HOH B 13 1014 21 HOH HOH . E 3 HOH B 14 1015 22 HOH HOH . E 3 HOH B 15 1016 24 HOH HOH . E 3 HOH B 16 1017 25 HOH HOH . E 3 HOH B 17 1018 28 HOH HOH . E 3 HOH B 18 1019 29 HOH HOH . E 3 HOH B 19 1020 30 HOH HOH . E 3 HOH B 20 1021 31 HOH HOH . E 3 HOH B 21 1022 35 HOH HOH . E 3 HOH B 22 1023 36 HOH HOH . E 3 HOH B 23 1024 37 HOH HOH . E 3 HOH B 24 1025 38 HOH HOH . E 3 HOH B 25 1026 39 HOH HOH . E 3 HOH B 26 1027 44 HOH HOH . E 3 HOH B 27 1028 47 HOH HOH . E 3 HOH B 28 1029 48 HOH HOH . E 3 HOH B 29 1030 53 HOH HOH . E 3 HOH B 30 1031 54 HOH HOH . E 3 HOH B 31 1032 56 HOH HOH . E 3 HOH B 32 1033 57 HOH HOH . E 3 HOH B 33 1034 58 HOH HOH . E 3 HOH B 34 1035 62 HOH HOH . E 3 HOH B 35 1036 63 HOH HOH . E 3 HOH B 36 1037 64 HOH HOH . E 3 HOH B 37 1038 66 HOH HOH . E 3 HOH B 38 1039 70 HOH HOH . E 3 HOH B 39 1040 71 HOH HOH . E 3 HOH B 40 1041 72 HOH HOH . E 3 HOH B 41 1042 73 HOH HOH . E 3 HOH B 42 1043 74 HOH HOH . E 3 HOH B 43 1044 75 HOH HOH . E 3 HOH B 44 1045 76 HOH HOH . E 3 HOH B 45 1046 77 HOH HOH . E 3 HOH B 46 1047 80 HOH HOH . E 3 HOH B 47 1048 81 HOH HOH . E 3 HOH B 48 1049 83 HOH HOH . E 3 HOH B 49 1050 88 HOH HOH . E 3 HOH B 50 1051 89 HOH HOH . E 3 HOH B 51 1052 91 HOH HOH . E 3 HOH B 52 1053 93 HOH HOH . E 3 HOH B 53 1054 94 HOH HOH . E 3 HOH B 54 1055 96 HOH HOH . E 3 HOH B 55 1056 98 HOH HOH . E 3 HOH B 56 1057 99 HOH HOH . E 3 HOH B 57 1058 100 HOH HOH . E 3 HOH B 58 1059 101 HOH HOH . E 3 HOH B 59 1060 103 HOH HOH . E 3 HOH B 60 1061 104 HOH HOH . E 3 HOH B 61 1062 105 HOH HOH . E 3 HOH B 62 1063 106 HOH HOH . E 3 HOH B 63 1064 107 HOH HOH . E 3 HOH B 64 1065 111 HOH HOH . E 3 HOH B 65 1066 112 HOH HOH . E 3 HOH B 66 1067 113 HOH HOH . E 3 HOH B 67 1068 116 HOH HOH . E 3 HOH B 68 1069 118 HOH HOH . E 3 HOH B 69 1070 119 HOH HOH . E 3 HOH B 70 1071 120 HOH HOH . E 3 HOH B 71 1072 121 HOH HOH . E 3 HOH B 72 1073 122 HOH HOH . E 3 HOH B 73 1074 123 HOH HOH . E 3 HOH B 74 1075 133 HOH HOH . E 3 HOH B 75 1076 134 HOH HOH . E 3 HOH B 76 1077 135 HOH HOH . E 3 HOH B 77 1078 136 HOH HOH . E 3 HOH B 78 1079 137 HOH HOH . E 3 HOH B 79 1080 138 HOH HOH . E 3 HOH B 80 1081 139 HOH HOH . E 3 HOH B 81 1082 143 HOH HOH . E 3 HOH B 82 1083 146 HOH HOH . E 3 HOH B 83 1084 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 JE2 . . . C 2 11.087 17.681 19.187 1 18 ? C3 JE2 1001 B 1 HETATM 2 C C4 JE2 . . . C 2 11.16 18.333 17.947 1 20.34 ? C4 JE2 1001 B 1 HETATM 3 C C5 JE2 . . . C 2 12.22 19.228 17.688 1 19.7 ? C5 JE2 1001 B 1 HETATM 4 C C6 JE2 . . . C 2 13.225 19.484 18.669 1 18.32 ? C6 JE2 1001 B 1 HETATM 5 C C7 JE2 . . . C 2 13.149 18.817 19.943 1 17.75 ? C7 JE2 1001 B 1 HETATM 6 C C1 JE2 . . . C 2 12.066 17.918 20.173 1 17.05 ? C1 JE2 1001 B 1 HETATM 7 C C8 JE2 . . . C 2 14.177 19.033 21.045 1 17.16 ? C8 JE2 1001 B 1 HETATM 8 C C9 JE2 . . . C 2 14.314 20.426 18.325 1 17.17 ? C9 JE2 1001 B 1 HETATM 9 O O2 JE2 . . . C 2 11.966 17.265 21.372 1 18.46 ? O2 JE2 1001 B 1 HETATM 10 O O10 JE2 . . . C 2 15.51 20.129 18.413 1 17.85 ? O10 JE2 1001 B 1 HETATM 11 C C22 JE2 . . . C 2 16.35 24.459 18.522 1 18.17 ? C22 JE2 1001 B 1 HETATM 12 N N11 JE2 . . . C 2 13.902 21.662 17.896 1 14.88 ? N11 JE2 1001 B 1 HETATM 13 O O23 JE2 . . . C 2 16.311 25.633 18.147 1 22.34 ? O23 JE2 1001 B 1 HETATM 14 C C20 JE2 . . . C 2 15.024 23.672 18.627 1 17.28 ? C20 JE2 1001 B 1 HETATM 15 C C14 JE2 . . . C 2 13.998 22.299 15.085 1 16.43 ? C14 JE2 1001 B 1 HETATM 16 C C13 JE2 . . . C 2 14.238 23.343 16.153 1 16.45 ? C13 JE2 1001 B 1 HETATM 17 C C17 JE2 . . . C 2 13.493 20.324 13.103 1 21.06 ? C17 JE2 1001 B 1 HETATM 18 C C12 JE2 . . . C 2 14.813 22.705 17.449 1 16.36 ? C12 JE2 1001 B 1 HETATM 19 O O21 JE2 . . . C 2 13.955 24.584 18.656 1 17.61 ? O21 JE2 1001 B 1 HETATM 20 C C15 JE2 . . . C 2 15.072 21.719 14.364 1 15.39 ? C15 JE2 1001 B 1 HETATM 21 C C19 JE2 . . . C 2 12.668 21.88 14.806 1 17.11 ? C19 JE2 1001 B 1 HETATM 22 C C16 JE2 . . . C 2 14.824 20.737 13.377 1 20.07 ? C16 JE2 1001 B 1 HETATM 23 C C18 JE2 . . . C 2 12.414 20.896 13.819 1 19.69 ? C18 JE2 1001 B 1 HETATM 24 C C31 JE2 . . . C 2 19.405 24.299 17.48 1 17.52 ? C31 JE2 1001 B 1 HETATM 25 N N24 JE2 . . . C 2 17.505 23.809 18.883 1 17.77 ? N24 JE2 1001 B 1 HETATM 26 O O32 JE2 . . . C 2 19.154 23.259 16.878 1 15.3 ? O32 JE2 1001 B 1 HETATM 27 C C30 JE2 . . . C 2 18.782 24.577 18.868 1 17.95 ? C30 JE2 1001 B 1 HETATM 28 C C27 JE2 . . . C 2 19.669 24.144 20.095 1 16.99 ? C27 JE2 1001 B 1 HETATM 29 C C25 JE2 . . . C 2 17.479 22.905 20.074 1 17.46 ? C25 JE2 1001 B 1 HETATM 30 C C28 JE2 . . . C 2 19.377 24.963 21.374 1 17.66 ? C28 JE2 1001 B 1 HETATM 31 C C29 JE2 . . . C 2 21.189 24.168 19.794 1 17.65 ? C29 JE2 1001 B 1 HETATM 32 S S26 JE2 . . . C 2 19.184 22.45 20.36 1 18.89 ? S26 JE2 1001 B 1 HETATM 33 N N33 JE2 . . . C 2 20.212 25.282 17.028 1 16.42 ? N33 JE2 1001 B 1 HETATM 34 C C34 JE2 . . . C 2 20.869 25.162 15.738 1 15.39 ? C34 JE2 1001 B 1 HETATM 35 C C35 JE2 . . . C 2 20.635 26.379 14.886 1 17.07 ? C35 JE2 1001 B 1 HETATM 36 C C36 JE2 . . . C 2 19.368 26.657 14.257 1 17.95 ? C36 JE2 1001 B 1 HETATM 37 C C37 JE2 . . . C 2 19.235 27.829 13.468 1 17.82 ? C37 JE2 1001 B 1 HETATM 38 C C38 JE2 . . . C 2 20.325 28.715 13.301 1 17.79 ? C38 JE2 1001 B 1 HETATM 39 C C39 JE2 . . . C 2 21.565 28.445 13.918 1 17.61 ? C39 JE2 1001 B 1 HETATM 40 C C40 JE2 . . . C 2 21.717 27.284 14.706 1 17.18 ? C40 JE2 1001 B 1 HETATM 41 C C41 JE2 . . . C 2 18.161 25.75 14.396 1 19.93 ? C41 JE2 1001 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 41 #