data_1MSV # _model_server_result.job_id BYI6BJm0otE5_ovpCjr2Xg _model_server_result.datetime_utc '2024-11-22 21:52:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1msv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":355}' # _entry.id 1MSV # _exptl.entry_id 1MSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIAMINOBUTANE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.97 _cell.angle_gamma 90 _cell.entry_id 1MSV _cell.length_a 73.936 _cell.length_b 56.382 _cell.length_c 99.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C4 H12 N2' _chem_comp.formula_weight 88.151 _chem_comp.id PUT _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIAMINOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PUTRESCINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C4 PUT sing 277 n n N2 HN21 PUT sing 278 n n N2 HN22 PUT sing 279 n n C4 C3 PUT sing 280 n n C4 H41 PUT sing 281 n n C4 H42 PUT sing 282 n n C3 C2 PUT sing 283 n n C3 H31 PUT sing 284 n n C3 H32 PUT sing 285 n n C2 C1 PUT sing 286 n n C2 H21 PUT sing 287 n n C2 H22 PUT sing 288 n n C1 N1 PUT sing 289 n n C1 H11 PUT sing 290 n n C1 H12 PUT sing 291 n n N1 HN11 PUT sing 292 n n N1 HN12 PUT sing 293 n n # _atom_sites.entry_id 1MSV _atom_sites.fract_transf_matrix[1][1] 0.013525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005184 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010797 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PUT A 1 355 350 PUT PUT . D 3 TRS A 1 500 500 TRS TRS . E 2 PUT B 1 355 351 PUT PUT . F 3 TRS B 1 501 501 TRS TRS . G 4 HOH A 1 602 602 HOH HOH . G 4 HOH A 2 604 604 HOH HOH . G 4 HOH A 3 606 606 HOH HOH . G 4 HOH A 4 610 610 HOH HOH . G 4 HOH A 5 611 611 HOH HOH . G 4 HOH A 6 612 612 HOH HOH . G 4 HOH A 7 620 620 HOH HOH . G 4 HOH A 8 621 621 HOH HOH . G 4 HOH A 9 623 623 HOH HOH . G 4 HOH A 10 627 627 HOH HOH . G 4 HOH A 11 628 628 HOH HOH . G 4 HOH A 12 630 630 HOH HOH . G 4 HOH A 13 631 631 HOH HOH . G 4 HOH A 14 636 636 HOH HOH . G 4 HOH A 15 638 638 HOH HOH . G 4 HOH A 16 641 641 HOH HOH . G 4 HOH A 17 644 644 HOH HOH . G 4 HOH A 18 645 645 HOH HOH . G 4 HOH A 19 646 646 HOH HOH . G 4 HOH A 20 650 650 HOH HOH . G 4 HOH A 21 656 656 HOH HOH . G 4 HOH A 22 657 657 HOH HOH . G 4 HOH A 23 658 658 HOH HOH . G 4 HOH A 24 660 660 HOH HOH . G 4 HOH A 25 662 662 HOH HOH . G 4 HOH A 26 665 665 HOH HOH . G 4 HOH A 27 668 668 HOH HOH . G 4 HOH A 28 669 669 HOH HOH . G 4 HOH A 29 672 672 HOH HOH . G 4 HOH A 30 673 673 HOH HOH . G 4 HOH A 31 674 674 HOH HOH . G 4 HOH A 32 675 675 HOH HOH . G 4 HOH A 33 676 676 HOH HOH . G 4 HOH A 34 680 680 HOH HOH . G 4 HOH A 35 682 682 HOH HOH . G 4 HOH A 36 683 683 HOH HOH . G 4 HOH A 37 685 685 HOH HOH . G 4 HOH A 38 688 688 HOH HOH . G 4 HOH A 39 691 691 HOH HOH . G 4 HOH A 40 693 693 HOH HOH . G 4 HOH A 41 695 695 HOH HOH . G 4 HOH A 42 696 696 HOH HOH . G 4 HOH A 43 698 698 HOH HOH . G 4 HOH A 44 700 700 HOH HOH . G 4 HOH A 45 702 702 HOH HOH . G 4 HOH A 46 704 704 HOH HOH . G 4 HOH A 47 707 707 HOH HOH . G 4 HOH A 48 708 708 HOH HOH . G 4 HOH A 49 710 710 HOH HOH . G 4 HOH A 50 712 712 HOH HOH . G 4 HOH A 51 713 713 HOH HOH . G 4 HOH A 52 717 717 HOH HOH . G 4 HOH A 53 721 721 HOH HOH . G 4 HOH A 54 724 724 HOH HOH . G 4 HOH A 55 727 727 HOH HOH . G 4 HOH A 56 729 729 HOH HOH . G 4 HOH A 57 732 732 HOH HOH . G 4 HOH A 58 734 734 HOH HOH . G 4 HOH A 59 739 739 HOH HOH . G 4 HOH A 60 741 741 HOH HOH . G 4 HOH A 61 746 746 HOH HOH . G 4 HOH A 62 750 750 HOH HOH . G 4 HOH A 63 751 751 HOH HOH . G 4 HOH A 64 752 752 HOH HOH . G 4 HOH A 65 759 759 HOH HOH . G 4 HOH A 66 760 760 HOH HOH . G 4 HOH A 67 764 764 HOH HOH . G 4 HOH A 68 773 773 HOH HOH . G 4 HOH A 69 776 776 HOH HOH . G 4 HOH A 70 778 778 HOH HOH . G 4 HOH A 71 779 779 HOH HOH . G 4 HOH A 72 782 782 HOH HOH . G 4 HOH A 73 784 784 HOH HOH . G 4 HOH A 74 788 788 HOH HOH . G 4 HOH A 75 792 792 HOH HOH . G 4 HOH A 76 793 793 HOH HOH . G 4 HOH A 77 797 797 HOH HOH . G 4 HOH A 78 798 798 HOH HOH . G 4 HOH A 79 805 805 HOH HOH . G 4 HOH A 80 806 806 HOH HOH . G 4 HOH A 81 808 808 HOH HOH . G 4 HOH A 82 809 809 HOH HOH . G 4 HOH A 83 811 811 HOH HOH . G 4 HOH A 84 817 817 HOH HOH . G 4 HOH A 85 819 819 HOH HOH . G 4 HOH A 86 820 820 HOH HOH . G 4 HOH A 87 824 824 HOH HOH . G 4 HOH A 88 826 826 HOH HOH . G 4 HOH A 89 829 829 HOH HOH . G 4 HOH A 90 830 830 HOH HOH . G 4 HOH A 91 832 832 HOH HOH . G 4 HOH A 92 833 833 HOH HOH . G 4 HOH A 93 835 835 HOH HOH . G 4 HOH A 94 837 837 HOH HOH . G 4 HOH A 95 840 840 HOH HOH . G 4 HOH A 96 842 842 HOH HOH . G 4 HOH A 97 843 843 HOH HOH . G 4 HOH A 98 846 846 HOH HOH . G 4 HOH A 99 847 847 HOH HOH . G 4 HOH A 100 848 848 HOH HOH . G 4 HOH A 101 853 853 HOH HOH . G 4 HOH A 102 854 854 HOH HOH . G 4 HOH A 103 856 856 HOH HOH . G 4 HOH A 104 857 857 HOH HOH . G 4 HOH A 105 858 858 HOH HOH . G 4 HOH A 106 860 860 HOH HOH . G 4 HOH A 107 861 861 HOH HOH . G 4 HOH A 108 864 864 HOH HOH . G 4 HOH A 109 868 868 HOH HOH . G 4 HOH A 110 869 869 HOH HOH . G 4 HOH A 111 870 870 HOH HOH . G 4 HOH A 112 872 872 HOH HOH . G 4 HOH A 113 874 874 HOH HOH . G 4 HOH A 114 875 875 HOH HOH . G 4 HOH A 115 876 876 HOH HOH . G 4 HOH A 116 877 877 HOH HOH . G 4 HOH A 117 878 878 HOH HOH . G 4 HOH A 118 879 879 HOH HOH . G 4 HOH A 119 884 884 HOH HOH . G 4 HOH A 120 887 887 HOH HOH . G 4 HOH A 121 889 889 HOH HOH . G 4 HOH A 122 890 890 HOH HOH . G 4 HOH A 123 892 892 HOH HOH . G 4 HOH A 124 893 893 HOH HOH . G 4 HOH A 125 896 896 HOH HOH . G 4 HOH A 126 900 900 HOH HOH . G 4 HOH A 127 904 904 HOH HOH . G 4 HOH A 128 905 905 HOH HOH . H 4 HOH B 1 601 601 HOH HOH . H 4 HOH B 2 603 603 HOH HOH . H 4 HOH B 3 605 605 HOH HOH . H 4 HOH B 4 607 607 HOH HOH . H 4 HOH B 5 608 608 HOH HOH . H 4 HOH B 6 609 609 HOH HOH . H 4 HOH B 7 613 613 HOH HOH . H 4 HOH B 8 614 614 HOH HOH . H 4 HOH B 9 615 615 HOH HOH . H 4 HOH B 10 616 616 HOH HOH . H 4 HOH B 11 617 617 HOH HOH . H 4 HOH B 12 618 618 HOH HOH . H 4 HOH B 13 619 619 HOH HOH . H 4 HOH B 14 622 622 HOH HOH . H 4 HOH B 15 624 624 HOH HOH . H 4 HOH B 16 625 625 HOH HOH . H 4 HOH B 17 626 626 HOH HOH . H 4 HOH B 18 629 629 HOH HOH . H 4 HOH B 19 632 632 HOH HOH . H 4 HOH B 20 633 633 HOH HOH . H 4 HOH B 21 634 634 HOH HOH . H 4 HOH B 22 635 635 HOH HOH . H 4 HOH B 23 637 637 HOH HOH . H 4 HOH B 24 639 639 HOH HOH . H 4 HOH B 25 640 640 HOH HOH . H 4 HOH B 26 642 642 HOH HOH . H 4 HOH B 27 643 643 HOH HOH . H 4 HOH B 28 647 647 HOH HOH . H 4 HOH B 29 648 648 HOH HOH . H 4 HOH B 30 649 649 HOH HOH . H 4 HOH B 31 651 651 HOH HOH . H 4 HOH B 32 652 652 HOH HOH . H 4 HOH B 33 653 653 HOH HOH . H 4 HOH B 34 654 654 HOH HOH . H 4 HOH B 35 655 655 HOH HOH . H 4 HOH B 36 659 659 HOH HOH . H 4 HOH B 37 661 661 HOH HOH . H 4 HOH B 38 663 663 HOH HOH . H 4 HOH B 39 664 664 HOH HOH . H 4 HOH B 40 666 666 HOH HOH . H 4 HOH B 41 667 667 HOH HOH . H 4 HOH B 42 670 670 HOH HOH . H 4 HOH B 43 671 671 HOH HOH . H 4 HOH B 44 677 677 HOH HOH . H 4 HOH B 45 678 678 HOH HOH . H 4 HOH B 46 679 679 HOH HOH . H 4 HOH B 47 681 681 HOH HOH . H 4 HOH B 48 684 684 HOH HOH . H 4 HOH B 49 686 686 HOH HOH . H 4 HOH B 50 687 687 HOH HOH . H 4 HOH B 51 689 689 HOH HOH . H 4 HOH B 52 690 690 HOH HOH . H 4 HOH B 53 692 692 HOH HOH . H 4 HOH B 54 694 694 HOH HOH . H 4 HOH B 55 697 697 HOH HOH . H 4 HOH B 56 699 699 HOH HOH . H 4 HOH B 57 701 701 HOH HOH . H 4 HOH B 58 703 703 HOH HOH . H 4 HOH B 59 705 705 HOH HOH . H 4 HOH B 60 706 706 HOH HOH . H 4 HOH B 61 709 709 HOH HOH . H 4 HOH B 62 711 711 HOH HOH . H 4 HOH B 63 714 714 HOH HOH . H 4 HOH B 64 715 715 HOH HOH . H 4 HOH B 65 716 716 HOH HOH . H 4 HOH B 66 718 718 HOH HOH . H 4 HOH B 67 719 719 HOH HOH . H 4 HOH B 68 720 720 HOH HOH . H 4 HOH B 69 722 722 HOH HOH . H 4 HOH B 70 723 723 HOH HOH . H 4 HOH B 71 725 725 HOH HOH . H 4 HOH B 72 726 726 HOH HOH . H 4 HOH B 73 728 728 HOH HOH . H 4 HOH B 74 730 730 HOH HOH . H 4 HOH B 75 731 731 HOH HOH . H 4 HOH B 76 733 733 HOH HOH . H 4 HOH B 77 735 735 HOH HOH . H 4 HOH B 78 736 736 HOH HOH . H 4 HOH B 79 737 737 HOH HOH . H 4 HOH B 80 738 738 HOH HOH . H 4 HOH B 81 740 740 HOH HOH . H 4 HOH B 82 742 742 HOH HOH . H 4 HOH B 83 743 743 HOH HOH . H 4 HOH B 84 744 744 HOH HOH . H 4 HOH B 85 745 745 HOH HOH . H 4 HOH B 86 747 747 HOH HOH . H 4 HOH B 87 748 748 HOH HOH . H 4 HOH B 88 749 749 HOH HOH . H 4 HOH B 89 753 753 HOH HOH . H 4 HOH B 90 754 754 HOH HOH . H 4 HOH B 91 755 755 HOH HOH . H 4 HOH B 92 756 756 HOH HOH . H 4 HOH B 93 757 757 HOH HOH . H 4 HOH B 94 758 758 HOH HOH . H 4 HOH B 95 761 761 HOH HOH . H 4 HOH B 96 762 762 HOH HOH . H 4 HOH B 97 763 763 HOH HOH . H 4 HOH B 98 765 765 HOH HOH . H 4 HOH B 99 766 766 HOH HOH . H 4 HOH B 100 767 767 HOH HOH . H 4 HOH B 101 768 768 HOH HOH . H 4 HOH B 102 769 769 HOH HOH . H 4 HOH B 103 770 770 HOH HOH . H 4 HOH B 104 771 771 HOH HOH . H 4 HOH B 105 772 772 HOH HOH . H 4 HOH B 106 774 774 HOH HOH . H 4 HOH B 107 775 775 HOH HOH . H 4 HOH B 108 777 777 HOH HOH . H 4 HOH B 109 780 780 HOH HOH . H 4 HOH B 110 781 781 HOH HOH . H 4 HOH B 111 783 783 HOH HOH . H 4 HOH B 112 785 785 HOH HOH . H 4 HOH B 113 786 786 HOH HOH . H 4 HOH B 114 787 787 HOH HOH . H 4 HOH B 115 789 789 HOH HOH . H 4 HOH B 116 790 790 HOH HOH . H 4 HOH B 117 791 791 HOH HOH . H 4 HOH B 118 794 794 HOH HOH . H 4 HOH B 119 795 795 HOH HOH . H 4 HOH B 120 796 796 HOH HOH . H 4 HOH B 121 799 799 HOH HOH . H 4 HOH B 122 800 800 HOH HOH . H 4 HOH B 123 801 801 HOH HOH . H 4 HOH B 124 802 802 HOH HOH . H 4 HOH B 125 803 803 HOH HOH . H 4 HOH B 126 804 804 HOH HOH . H 4 HOH B 127 807 807 HOH HOH . H 4 HOH B 128 810 810 HOH HOH . H 4 HOH B 129 812 812 HOH HOH . H 4 HOH B 130 813 813 HOH HOH . H 4 HOH B 131 814 814 HOH HOH . H 4 HOH B 132 815 815 HOH HOH . H 4 HOH B 133 816 816 HOH HOH . H 4 HOH B 134 818 818 HOH HOH . H 4 HOH B 135 821 821 HOH HOH . H 4 HOH B 136 822 822 HOH HOH . H 4 HOH B 137 823 823 HOH HOH . H 4 HOH B 138 825 825 HOH HOH . H 4 HOH B 139 827 827 HOH HOH . H 4 HOH B 140 828 828 HOH HOH . H 4 HOH B 141 831 831 HOH HOH . H 4 HOH B 142 834 834 HOH HOH . H 4 HOH B 143 836 836 HOH HOH . H 4 HOH B 144 838 838 HOH HOH . H 4 HOH B 145 839 839 HOH HOH . H 4 HOH B 146 841 841 HOH HOH . H 4 HOH B 147 844 844 HOH HOH . H 4 HOH B 148 845 845 HOH HOH . H 4 HOH B 149 849 849 HOH HOH . H 4 HOH B 150 850 850 HOH HOH . H 4 HOH B 151 851 851 HOH HOH . H 4 HOH B 152 852 852 HOH HOH . H 4 HOH B 153 855 855 HOH HOH . H 4 HOH B 154 859 859 HOH HOH . H 4 HOH B 155 862 862 HOH HOH . H 4 HOH B 156 863 863 HOH HOH . H 4 HOH B 157 865 865 HOH HOH . H 4 HOH B 158 866 866 HOH HOH . H 4 HOH B 159 867 867 HOH HOH . H 4 HOH B 160 871 871 HOH HOH . H 4 HOH B 161 873 873 HOH HOH . H 4 HOH B 162 880 880 HOH HOH . H 4 HOH B 163 881 881 HOH HOH . H 4 HOH B 164 882 882 HOH HOH . H 4 HOH B 165 883 883 HOH HOH . H 4 HOH B 166 885 885 HOH HOH . H 4 HOH B 167 886 886 HOH HOH . H 4 HOH B 168 888 888 HOH HOH . H 4 HOH B 169 891 891 HOH HOH . H 4 HOH B 170 894 894 HOH HOH . H 4 HOH B 171 895 895 HOH HOH . H 4 HOH B 172 897 897 HOH HOH . H 4 HOH B 173 898 898 HOH HOH . H 4 HOH B 174 899 899 HOH HOH . H 4 HOH B 175 901 901 HOH HOH . H 4 HOH B 176 902 902 HOH HOH . H 4 HOH B 177 903 903 HOH HOH . H 4 HOH B 178 906 906 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 PUT . . . C 2 61.633 13.465 6.227 1 26.28 ? N2 PUT 355 A 1 HETATM 2 C C4 PUT . . . C 2 62.306 13.102 7.501 1 25.87 ? C4 PUT 355 A 1 HETATM 3 C C3 PUT . . . C 2 62.332 11.557 7.693 1 22.95 ? C3 PUT 355 A 1 HETATM 4 C C2 PUT . . . C 2 60.913 10.909 7.743 1 24 ? C2 PUT 355 A 1 HETATM 5 C C1 PUT . . . C 2 61.041 9.376 7.93 1 20 ? C1 PUT 355 A 1 HETATM 6 N N1 PUT . . . C 2 59.719 8.728 7.981 1 22.13 ? N1 PUT 355 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #