data_1MTC # _model_server_result.job_id gaekSr2aS0WE67ERBWbtKw _model_server_result.datetime_utc '2024-10-13 10:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":6218}' # _entry.id 1MTC # _exptl.entry_id 1MTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.552 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,10R)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.12 _cell.angle_gamma 90 _cell.entry_id 1MTC _cell.length_a 86.75 _cell.length_b 68.58 _cell.length_c 80.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MTC _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H27 N3 O7 S' _chem_comp.formula_weight 501.552 _chem_comp.id GPR _chem_comp.mon_nstd_flag . _chem_comp.name (9R,10R)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GPR sing 129 n n N1 HN11 GPR sing 130 n n N1 HN12 GPR sing 131 n n CA1 C1 GPR sing 132 n n CA1 CB1 GPR sing 133 n n CA1 HA1 GPR sing 134 n n C1 O11 GPR doub 135 n n C1 O12 GPR sing 136 n n O12 HO2 GPR sing 137 n n CB1 CG1 GPR sing 138 n n CB1 HB11 GPR sing 139 n n CB1 HB12 GPR sing 140 n n CG1 CD1 GPR sing 141 n n CG1 HG11 GPR sing 142 n n CG1 HG12 GPR sing 143 n n CD1 OE1 GPR doub 144 n n CD1 N2 GPR sing 145 n n N2 CA2 GPR sing 146 n n N2 HN2 GPR sing 147 n n CA2 C2 GPR sing 148 n n CA2 CB2 GPR sing 149 n n CA2 HA2 GPR sing 150 n n C2 O2 GPR doub 151 n n C2 N3 GPR sing 152 n n CB2 SG2 GPR sing 153 n n CB2 HB21 GPR sing 154 n n CB2 HB22 GPR sing 155 n n SG2 CA4 GPR sing 156 n n N3 CA3 GPR sing 157 n n N3 HN3 GPR sing 158 n n CA3 C3 GPR sing 159 n n CA3 HA31 GPR sing 160 n n CA3 HA32 GPR sing 161 n n C3 O31 GPR doub 162 n n C3 O32 GPR sing 163 n n O32 HO3 GPR sing 164 n n CA4 CB4 GPR sing 165 n n CA4 CA5 GPR sing 166 n n CA4 HA4 GPR sing 167 n n CB4 CG4 GPR doub 168 n y CB4 CH4 GPR sing 169 n y CG4 CD4 GPR sing 170 n y CG4 HG4 GPR sing 171 n n CD4 CE4 GPR doub 172 n y CD4 HD4 GPR sing 173 n n CE4 CZ4 GPR sing 174 n y CE4 HE4 GPR sing 175 n n CZ4 CH4 GPR doub 176 n y CZ4 HZ4 GPR sing 177 n n CH4 CH5 GPR sing 178 n y CH5 CZ5 GPR sing 179 n y CH5 CB5 GPR doub 180 n y CZ5 CE5 GPR doub 181 n y CZ5 HZ5 GPR sing 182 n n CE5 CD5 GPR sing 183 n y CE5 HE5 GPR sing 184 n n CD5 CG5 GPR doub 185 n y CD5 HD5 GPR sing 186 n n CG5 CB5 GPR sing 187 n y CG5 HG5 GPR sing 188 n n CB5 CA5 GPR sing 189 n n CA5 O5 GPR sing 190 n n CA5 HA5 GPR sing 191 n n O5 HO5 GPR sing 192 n n # _atom_sites.entry_id 1MTC _atom_sites.fract_transf_matrix[1][1] 0.011527 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GPR A 1 5218 5218 GPR GPR . D 2 GPR B 1 6218 6218 GPR GPR . E 3 HOH A 1 301 301 HOH HOH . E 3 HOH A 2 303 303 HOH HOH . E 3 HOH A 3 304 304 HOH HOH . E 3 HOH A 4 305 305 HOH HOH . E 3 HOH A 5 306 306 HOH HOH . E 3 HOH A 6 308 308 HOH HOH . E 3 HOH A 7 313 313 HOH HOH . E 3 HOH A 8 314 314 HOH HOH . E 3 HOH A 9 315 315 HOH HOH . E 3 HOH A 10 316 316 HOH HOH . E 3 HOH A 11 318 318 HOH HOH . E 3 HOH A 12 323 323 HOH HOH . E 3 HOH A 13 324 324 HOH HOH . E 3 HOH A 14 325 325 HOH HOH . E 3 HOH A 15 326 326 HOH HOH . E 3 HOH A 16 327 327 HOH HOH . E 3 HOH A 17 330 330 HOH HOH . E 3 HOH A 18 331 331 HOH HOH . E 3 HOH A 19 332 332 HOH HOH . E 3 HOH A 20 335 335 HOH HOH . E 3 HOH A 21 338 338 HOH HOH . E 3 HOH A 22 339 339 HOH HOH . E 3 HOH A 23 340 340 HOH HOH . E 3 HOH A 24 341 341 HOH HOH . E 3 HOH A 25 343 343 HOH HOH . E 3 HOH A 26 344 344 HOH HOH . E 3 HOH A 27 345 345 HOH HOH . E 3 HOH A 28 346 346 HOH HOH . E 3 HOH A 29 347 347 HOH HOH . E 3 HOH A 30 350 350 HOH HOH . E 3 HOH A 31 351 351 HOH HOH . E 3 HOH A 32 353 353 HOH HOH . E 3 HOH A 33 357 357 HOH HOH . E 3 HOH A 34 358 358 HOH HOH . E 3 HOH A 35 361 361 HOH HOH . E 3 HOH A 36 369 369 HOH HOH . E 3 HOH A 37 371 371 HOH HOH . E 3 HOH A 38 374 374 HOH HOH . E 3 HOH A 39 375 375 HOH HOH . E 3 HOH A 40 376 376 HOH HOH . E 3 HOH A 41 377 377 HOH HOH . E 3 HOH A 42 378 378 HOH HOH . E 3 HOH A 43 380 380 HOH HOH . E 3 HOH A 44 381 381 HOH HOH . E 3 HOH A 45 382 382 HOH HOH . E 3 HOH A 46 386 386 HOH HOH . E 3 HOH A 47 393 393 HOH HOH . E 3 HOH A 48 396 396 HOH HOH . E 3 HOH A 49 399 399 HOH HOH . E 3 HOH A 50 400 400 HOH HOH . E 3 HOH A 51 403 403 HOH HOH . E 3 HOH A 52 404 404 HOH HOH . E 3 HOH A 53 407 407 HOH HOH . E 3 HOH A 54 410 410 HOH HOH . E 3 HOH A 55 411 411 HOH HOH . E 3 HOH A 56 412 412 HOH HOH . E 3 HOH A 57 415 415 HOH HOH . E 3 HOH A 58 417 417 HOH HOH . E 3 HOH A 59 418 418 HOH HOH . E 3 HOH A 60 419 419 HOH HOH . E 3 HOH A 61 421 421 HOH HOH . E 3 HOH A 62 422 422 HOH HOH . E 3 HOH A 63 425 425 HOH HOH . E 3 HOH A 64 426 426 HOH HOH . E 3 HOH A 65 427 427 HOH HOH . E 3 HOH A 66 428 428 HOH HOH . E 3 HOH A 67 430 430 HOH HOH . E 3 HOH A 68 433 433 HOH HOH . E 3 HOH A 69 435 435 HOH HOH . E 3 HOH A 70 438 438 HOH HOH . E 3 HOH A 71 439 439 HOH HOH . E 3 HOH A 72 440 440 HOH HOH . E 3 HOH A 73 441 441 HOH HOH . E 3 HOH A 74 443 443 HOH HOH . E 3 HOH A 75 444 444 HOH HOH . E 3 HOH A 76 445 445 HOH HOH . E 3 HOH A 77 446 446 HOH HOH . E 3 HOH A 78 447 447 HOH HOH . E 3 HOH A 79 449 449 HOH HOH . E 3 HOH A 80 450 450 HOH HOH . E 3 HOH A 81 451 451 HOH HOH . E 3 HOH A 82 452 452 HOH HOH . E 3 HOH A 83 455 455 HOH HOH . E 3 HOH A 84 457 457 HOH HOH . E 3 HOH A 85 460 460 HOH HOH . E 3 HOH A 86 462 462 HOH HOH . E 3 HOH A 87 463 463 HOH HOH . E 3 HOH A 88 468 468 HOH HOH . E 3 HOH A 89 469 469 HOH HOH . E 3 HOH A 90 471 471 HOH HOH . E 3 HOH A 91 472 472 HOH HOH . E 3 HOH A 92 473 473 HOH HOH . E 3 HOH A 93 474 474 HOH HOH . E 3 HOH A 94 475 475 HOH HOH . E 3 HOH A 95 476 476 HOH HOH . E 3 HOH A 96 477 477 HOH HOH . E 3 HOH A 97 478 478 HOH HOH . E 3 HOH A 98 480 480 HOH HOH . E 3 HOH A 99 481 481 HOH HOH . F 3 HOH B 1 302 302 HOH HOH . F 3 HOH B 2 307 307 HOH HOH . F 3 HOH B 3 309 309 HOH HOH . F 3 HOH B 4 310 310 HOH HOH . F 3 HOH B 5 311 311 HOH HOH . F 3 HOH B 6 312 312 HOH HOH . F 3 HOH B 7 317 317 HOH HOH . F 3 HOH B 8 319 319 HOH HOH . F 3 HOH B 9 320 320 HOH HOH . F 3 HOH B 10 321 321 HOH HOH . F 3 HOH B 11 322 322 HOH HOH . F 3 HOH B 12 328 328 HOH HOH . F 3 HOH B 13 329 329 HOH HOH . F 3 HOH B 14 333 333 HOH HOH . F 3 HOH B 15 334 334 HOH HOH . F 3 HOH B 16 336 336 HOH HOH . F 3 HOH B 17 337 337 HOH HOH . F 3 HOH B 18 342 342 HOH HOH . F 3 HOH B 19 348 348 HOH HOH . F 3 HOH B 20 349 349 HOH HOH . F 3 HOH B 21 352 352 HOH HOH . F 3 HOH B 22 354 354 HOH HOH . F 3 HOH B 23 355 355 HOH HOH . F 3 HOH B 24 356 356 HOH HOH . F 3 HOH B 25 359 359 HOH HOH . F 3 HOH B 26 360 360 HOH HOH . F 3 HOH B 27 362 362 HOH HOH . F 3 HOH B 28 363 363 HOH HOH . F 3 HOH B 29 364 364 HOH HOH . F 3 HOH B 30 365 365 HOH HOH . F 3 HOH B 31 366 366 HOH HOH . F 3 HOH B 32 367 367 HOH HOH . F 3 HOH B 33 368 368 HOH HOH . F 3 HOH B 34 370 370 HOH HOH . F 3 HOH B 35 372 372 HOH HOH . F 3 HOH B 36 373 373 HOH HOH . F 3 HOH B 37 379 379 HOH HOH . F 3 HOH B 38 383 383 HOH HOH . F 3 HOH B 39 384 384 HOH HOH . F 3 HOH B 40 385 385 HOH HOH . F 3 HOH B 41 387 387 HOH HOH . F 3 HOH B 42 388 388 HOH HOH . F 3 HOH B 43 389 389 HOH HOH . F 3 HOH B 44 390 390 HOH HOH . F 3 HOH B 45 391 391 HOH HOH . F 3 HOH B 46 392 392 HOH HOH . F 3 HOH B 47 394 394 HOH HOH . F 3 HOH B 48 395 395 HOH HOH . F 3 HOH B 49 397 397 HOH HOH . F 3 HOH B 50 398 398 HOH HOH . F 3 HOH B 51 401 401 HOH HOH . F 3 HOH B 52 402 402 HOH HOH . F 3 HOH B 53 405 405 HOH HOH . F 3 HOH B 54 406 406 HOH HOH . F 3 HOH B 55 408 408 HOH HOH . F 3 HOH B 56 409 409 HOH HOH . F 3 HOH B 57 413 413 HOH HOH . F 3 HOH B 58 414 414 HOH HOH . F 3 HOH B 59 416 416 HOH HOH . F 3 HOH B 60 420 420 HOH HOH . F 3 HOH B 61 423 423 HOH HOH . F 3 HOH B 62 424 424 HOH HOH . F 3 HOH B 63 429 429 HOH HOH . F 3 HOH B 64 431 431 HOH HOH . F 3 HOH B 65 432 432 HOH HOH . F 3 HOH B 66 434 434 HOH HOH . F 3 HOH B 67 436 436 HOH HOH . F 3 HOH B 68 437 437 HOH HOH . F 3 HOH B 69 442 442 HOH HOH . F 3 HOH B 70 448 448 HOH HOH . F 3 HOH B 71 453 453 HOH HOH . F 3 HOH B 72 454 454 HOH HOH . F 3 HOH B 73 456 456 HOH HOH . F 3 HOH B 74 458 458 HOH HOH . F 3 HOH B 75 459 459 HOH HOH . F 3 HOH B 76 461 461 HOH HOH . F 3 HOH B 77 464 464 HOH HOH . F 3 HOH B 78 465 465 HOH HOH . F 3 HOH B 79 466 466 HOH HOH . F 3 HOH B 80 467 467 HOH HOH . F 3 HOH B 81 470 470 HOH HOH . F 3 HOH B 82 479 479 HOH HOH . F 3 HOH B 83 482 482 HOH HOH . F 3 HOH B 84 483 483 HOH HOH . F 3 HOH B 85 484 484 HOH HOH . F 3 HOH B 86 485 485 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GPR . . . D 2 18.013 14.754 13.873 1 12.56 ? N1 GPR 6218 B 1 HETATM 2 C CA1 GPR . . . D 2 18.291 14.303 12.432 1 23.32 ? CA1 GPR 6218 B 1 HETATM 3 C C1 GPR . . . D 2 17.404 13.153 11.952 1 20.58 ? C1 GPR 6218 B 1 HETATM 4 O O11 GPR . . . D 2 16.961 13.04 10.79 1 15.51 ? O11 GPR 6218 B 1 HETATM 5 O O12 GPR . . . D 2 16.533 12.727 12.902 1 18.52 ? O12 GPR 6218 B 1 HETATM 6 C CB1 GPR . . . D 2 19.735 13.663 12.568 1 27.23 ? CB1 GPR 6218 B 1 HETATM 7 C CG1 GPR . . . D 2 20.434 13.979 11.305 1 27.66 ? CG1 GPR 6218 B 1 HETATM 8 C CD1 GPR . . . D 2 21.783 13.532 11.066 1 25.09 ? CD1 GPR 6218 B 1 HETATM 9 O OE1 GPR . . . D 2 22.67 13.806 11.92 1 31.6 ? OE1 GPR 6218 B 1 HETATM 10 N N2 GPR . . . D 2 22.007 12.982 9.838 1 19.41 ? N2 GPR 6218 B 1 HETATM 11 C CA2 GPR . . . D 2 23.411 12.417 9.849 1 18.01 ? CA2 GPR 6218 B 1 HETATM 12 C C2 GPR . . . D 2 24.183 13.18 8.711 1 18.02 ? C2 GPR 6218 B 1 HETATM 13 O O2 GPR . . . D 2 25.066 12.465 8.263 1 21.5 ? O2 GPR 6218 B 1 HETATM 14 C CB2 GPR . . . D 2 23.368 10.896 9.468 1 19.48 ? CB2 GPR 6218 B 1 HETATM 15 S SG2 GPR . . . D 2 22.598 10.009 10.877 1 28.7 ? SG2 GPR 6218 B 1 HETATM 16 N N3 GPR . . . D 2 23.597 14.193 8.128 1 15.44 ? N3 GPR 6218 B 1 HETATM 17 C CA3 GPR . . . D 2 24.118 14.612 6.771 1 13.75 ? CA3 GPR 6218 B 1 HETATM 18 C C3 GPR . . . D 2 25.165 15.6 7.034 1 17.28 ? C3 GPR 6218 B 1 HETATM 19 O O31 GPR . . . D 2 25.266 16.192 8.147 1 25.04 ? O31 GPR 6218 B 1 HETATM 20 O O32 GPR . . . D 2 25.614 16.437 6.103 1 24.06 ? O32 GPR 6218 B 1 HETATM 21 C CA4 GPR . . . D 2 24.194 10.13 11.43 1 36.08 ? CA4 GPR 6218 B 1 HETATM 22 C CB4 GPR . . . D 2 25.038 8.927 11.056 1 40.8 ? CB4 GPR 6218 B 1 HETATM 23 C CG4 GPR . . . D 2 26.321 9.159 10.403 1 40.46 ? CG4 GPR 6218 B 1 HETATM 24 C CD4 GPR . . . D 2 27.299 8.152 10.377 1 39.13 ? CD4 GPR 6218 B 1 HETATM 25 C CE4 GPR . . . D 2 27.019 6.92 10.995 1 39.94 ? CE4 GPR 6218 B 1 HETATM 26 C CZ4 GPR . . . D 2 25.804 6.652 11.634 1 41.59 ? CZ4 GPR 6218 B 1 HETATM 27 C CH4 GPR . . . D 2 24.792 7.653 11.677 1 41.8 ? CH4 GPR 6218 B 1 HETATM 28 C CH5 GPR . . . D 2 23.871 7.731 12.871 1 40.3 ? CH5 GPR 6218 B 1 HETATM 29 C CZ5 GPR . . . D 2 23.449 6.458 13.42 1 42.88 ? CZ5 GPR 6218 B 1 HETATM 30 C CE5 GPR . . . D 2 22.447 6.602 14.357 1 43.32 ? CE5 GPR 6218 B 1 HETATM 31 C CD5 GPR . . . D 2 21.86 7.778 14.789 1 40.56 ? CD5 GPR 6218 B 1 HETATM 32 C CG5 GPR . . . D 2 22.291 8.973 14.246 1 38.84 ? CG5 GPR 6218 B 1 HETATM 33 C CB5 GPR . . . D 2 23.294 8.88 13.302 1 38.62 ? CB5 GPR 6218 B 1 HETATM 34 C CA5 GPR . . . D 2 23.892 10.249 12.934 1 38.32 ? CA5 GPR 6218 B 1 HETATM 35 O O5 GPR . . . D 2 25.016 10.461 13.76 1 43.5 ? O5 GPR 6218 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 442 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #