data_1MTR # _model_server_result.job_id QNXHDHlPoawQU5MN4nY96g _model_server_result.datetime_utc '2024-11-24 06:31:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mtr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 1MTR # _exptl.entry_id 1MTR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.757 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-BENZYL-3-(8-SEC-BUTYL-7,10-DIOXO-2-OXA-6,9-DIAZA-BICYCLO[11.2.2] HEPTADECA-1(16),13(17),14-TRIEN-11-YLAMINO)-2-HYDROXY-PROPYL]-CARBAMIC ACID TERT-BUTYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MTR _cell.length_a 51.4 _cell.length_b 58.7 _cell.length_c 62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MTR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C ILE 66 B ILE 66 1_555 B N ABA 67 B ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C ABA 67 B ABA 67 1_555 B N GLY 68 B GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C GLY 94 B GLY 94 1_555 B N ABA 95 B ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C ABA 95 B ABA 95 1_555 B N THR 96 B THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C33 H48 N4 O6' _chem_comp.formula_weight 596.757 _chem_comp.id PI6 _chem_comp.mon_nstd_flag . _chem_comp.name '[1-BENZYL-3-(8-SEC-BUTYL-7,10-DIOXO-2-OXA-6,9-DIAZA-BICYCLO[11.2.2] HEPTADECA-1(16),13(17),14-TRIEN-11-YLAMINO)-2-HYDROXY-PROPYL]-CARBAMIC ACID TERT-BUTYL ESTER' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 6' # _atom_sites.entry_id 1MTR _atom_sites.fract_transf_matrix[1][1] 0.019455 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 101 502 SO4 SO4 . D 2 SO4 A 1 102 503 SO4 SO4 . E 3 PI6 B 1 101 100 PI6 PI6 . F 2 SO4 B 1 102 501 SO4 SO4 . G 4 HOH A 1 201 302 HOH HOH . G 4 HOH A 2 202 306 HOH HOH . G 4 HOH A 3 203 307 HOH HOH . G 4 HOH A 4 204 311 HOH HOH . G 4 HOH A 5 205 312 HOH HOH . G 4 HOH A 6 206 313 HOH HOH . G 4 HOH A 7 207 314 HOH HOH . G 4 HOH A 8 208 318 HOH HOH . G 4 HOH A 9 209 319 HOH HOH . G 4 HOH A 10 210 327 HOH HOH . G 4 HOH A 11 211 329 HOH HOH . G 4 HOH A 12 212 332 HOH HOH . G 4 HOH A 13 213 333 HOH HOH . G 4 HOH A 14 214 334 HOH HOH . G 4 HOH A 15 215 335 HOH HOH . G 4 HOH A 16 216 339 HOH HOH . G 4 HOH A 17 217 341 HOH HOH . G 4 HOH A 18 218 342 HOH HOH . G 4 HOH A 19 219 344 HOH HOH . G 4 HOH A 20 220 345 HOH HOH . G 4 HOH A 21 221 346 HOH HOH . G 4 HOH A 22 222 349 HOH HOH . G 4 HOH A 23 223 351 HOH HOH . G 4 HOH A 24 224 353 HOH HOH . G 4 HOH A 25 225 362 HOH HOH . G 4 HOH A 26 226 374 HOH HOH . G 4 HOH A 27 227 375 HOH HOH . G 4 HOH A 28 228 376 HOH HOH . G 4 HOH A 29 229 377 HOH HOH . G 4 HOH A 30 230 378 HOH HOH . G 4 HOH A 31 231 380 HOH HOH . G 4 HOH A 32 232 381 HOH HOH . G 4 HOH A 33 233 382 HOH HOH . G 4 HOH A 34 234 383 HOH HOH . G 4 HOH A 35 235 384 HOH HOH . G 4 HOH A 36 236 385 HOH HOH . G 4 HOH A 37 237 388 HOH HOH . G 4 HOH A 38 238 389 HOH HOH . G 4 HOH A 39 239 390 HOH HOH . G 4 HOH A 40 240 391 HOH HOH . G 4 HOH A 41 241 393 HOH HOH . G 4 HOH A 42 242 394 HOH HOH . G 4 HOH A 43 243 396 HOH HOH . G 4 HOH A 44 244 399 HOH HOH . G 4 HOH A 45 245 400 HOH HOH . G 4 HOH A 46 246 403 HOH HOH . G 4 HOH A 47 247 405 HOH HOH . G 4 HOH A 48 248 406 HOH HOH . G 4 HOH A 49 249 409 HOH HOH . G 4 HOH A 50 250 411 HOH HOH . G 4 HOH A 51 251 414 HOH HOH . G 4 HOH A 52 252 415 HOH HOH . G 4 HOH A 53 253 416 HOH HOH . H 4 HOH B 1 301 301 HOH HOH . H 4 HOH B 2 302 303 HOH HOH . H 4 HOH B 3 303 304 HOH HOH . H 4 HOH B 4 304 305 HOH HOH . H 4 HOH B 5 305 308 HOH HOH . H 4 HOH B 6 306 309 HOH HOH . H 4 HOH B 7 307 310 HOH HOH . H 4 HOH B 8 308 315 HOH HOH . H 4 HOH B 9 309 316 HOH HOH . H 4 HOH B 10 310 317 HOH HOH . H 4 HOH B 11 311 320 HOH HOH . H 4 HOH B 12 312 321 HOH HOH . H 4 HOH B 13 313 322 HOH HOH . H 4 HOH B 14 314 323 HOH HOH . H 4 HOH B 15 315 324 HOH HOH . H 4 HOH B 16 316 325 HOH HOH . H 4 HOH B 17 317 326 HOH HOH . H 4 HOH B 18 318 328 HOH HOH . H 4 HOH B 19 319 330 HOH HOH . H 4 HOH B 20 320 331 HOH HOH . H 4 HOH B 21 321 336 HOH HOH . H 4 HOH B 22 322 337 HOH HOH . H 4 HOH B 23 323 338 HOH HOH . H 4 HOH B 24 324 340 HOH HOH . H 4 HOH B 25 325 343 HOH HOH . H 4 HOH B 26 326 347 HOH HOH . H 4 HOH B 27 327 348 HOH HOH . H 4 HOH B 28 328 350 HOH HOH . H 4 HOH B 29 329 352 HOH HOH . H 4 HOH B 30 330 354 HOH HOH . H 4 HOH B 31 331 355 HOH HOH . H 4 HOH B 32 332 356 HOH HOH . H 4 HOH B 33 333 357 HOH HOH . H 4 HOH B 34 334 358 HOH HOH . H 4 HOH B 35 335 359 HOH HOH . H 4 HOH B 36 336 360 HOH HOH . H 4 HOH B 37 337 361 HOH HOH . H 4 HOH B 38 338 363 HOH HOH . H 4 HOH B 39 339 364 HOH HOH . H 4 HOH B 40 340 365 HOH HOH . H 4 HOH B 41 341 366 HOH HOH . H 4 HOH B 42 342 367 HOH HOH . H 4 HOH B 43 343 368 HOH HOH . H 4 HOH B 44 344 369 HOH HOH . H 4 HOH B 45 345 370 HOH HOH . H 4 HOH B 46 346 371 HOH HOH . H 4 HOH B 47 347 372 HOH HOH . H 4 HOH B 48 348 373 HOH HOH . H 4 HOH B 49 349 379 HOH HOH . H 4 HOH B 50 350 386 HOH HOH . H 4 HOH B 51 351 387 HOH HOH . H 4 HOH B 52 352 392 HOH HOH . H 4 HOH B 53 353 395 HOH HOH . H 4 HOH B 54 354 397 HOH HOH . H 4 HOH B 55 355 398 HOH HOH . H 4 HOH B 56 356 401 HOH HOH . H 4 HOH B 57 357 402 HOH HOH . H 4 HOH B 58 358 404 HOH HOH . H 4 HOH B 59 359 407 HOH HOH . H 4 HOH B 60 360 408 HOH HOH . H 4 HOH B 61 361 410 HOH HOH . H 4 HOH B 62 362 413 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PI6 . . . E 3 3.812 -0.151 12.128 1 19.87 ? O1 PI6 101 B 1 HETATM 2 C C PI6 . . . E 3 3.839 1.07 12.419 1 19.01 ? C PI6 101 B 1 HETATM 3 O O2 PI6 . . . E 3 2.846 1.907 12.139 1 14.39 ? O2 PI6 101 B 1 HETATM 4 C CT PI6 . . . E 3 1.609 1.362 11.669 1 14.89 ? CT PI6 101 B 1 HETATM 5 C C1 PI6 . . . E 3 1.815 0.746 10.269 1 15.79 ? C1 PI6 101 B 1 HETATM 6 C C2 PI6 . . . E 3 1.066 0.359 12.657 1 17.12 ? C2 PI6 101 B 1 HETATM 7 C C3 PI6 . . . E 3 0.65 2.515 11.579 1 15.78 ? C3 PI6 101 B 1 HETATM 8 N N PI6 . . . E 3 4.892 1.641 12.992 1 13.98 ? N PI6 101 B 1 HETATM 9 C CA PI6 . . . E 3 6.086 0.898 13.394 1 18.24 ? CA PI6 101 B 1 HETATM 10 C C4 PI6 . . . E 3 6.025 0.54 14.867 1 17.92 ? C4 PI6 101 B 1 HETATM 11 O OXT PI6 . . . E 3 7.214 -0.158 15.21 1 17.85 ? OXT PI6 101 B 1 HETATM 12 C CB PI6 . . . E 3 7.325 1.731 13.147 1 18.9 ? CB PI6 101 B 1 HETATM 13 C CG PI6 . . . E 3 7.517 2.083 11.738 1 23.44 ? CG PI6 101 B 1 HETATM 14 C CD1 PI6 . . . E 3 7.277 3.381 11.3 1 23.61 ? CD1 PI6 101 B 1 HETATM 15 C CD2 PI6 . . . E 3 7.852 1.103 10.818 1 20.26 ? CD2 PI6 101 B 1 HETATM 16 C CE1 PI6 . . . E 3 7.359 3.695 9.959 1 28.39 ? CE1 PI6 101 B 1 HETATM 17 C CE2 PI6 . . . E 3 7.934 1.407 9.477 1 26.41 ? CE2 PI6 101 B 1 HETATM 18 C CZ PI6 . . . E 3 7.686 2.701 9.042 1 23.95 ? CZ PI6 101 B 1 HETATM 19 C CM PI6 . . . E 3 4.826 -0.35 15.162 1 13.65 ? CM PI6 101 B 1 HETATM 20 N N1 PI6 . . . E 3 4.98 -0.749 16.565 1 18.24 ? N1 PI6 101 B 1 HETATM 21 C CA1 PI6 . . . E 3 4.733 -2.185 16.866 1 16.12 ? CA1 PI6 101 B 1 HETATM 22 C C5 PI6 . . . E 3 5.727 -3.184 16.261 1 18.58 ? C5 PI6 101 B 1 HETATM 23 O O PI6 . . . E 3 5.938 -3.213 15.043 1 21.4 ? O PI6 101 B 1 HETATM 24 C CB1 PI6 . . . E 3 3.307 -2.601 16.485 1 11.52 ? CB1 PI6 101 B 1 HETATM 25 C CG1 PI6 . . . E 3 3.088 -4.088 16.588 1 21.65 ? CG1 PI6 101 B 1 HETATM 26 C CD11 PI6 . . . E 3 3.069 -4.882 15.437 1 23.57 ? CD11 PI6 101 B 1 HETATM 27 C CD21 PI6 . . . E 3 3.043 -4.729 17.84 1 17.64 ? CD21 PI6 101 B 1 HETATM 28 C CE11 PI6 . . . E 3 3.027 -6.265 15.516 1 17.21 ? CE11 PI6 101 B 1 HETATM 29 C CE21 PI6 . . . E 3 3.007 -6.103 17.928 1 18.42 ? CE21 PI6 101 B 1 HETATM 30 C CZ1 PI6 . . . E 3 3.006 -6.87 16.757 1 22.58 ? CZ1 PI6 101 B 1 HETATM 31 N N2 PI6 . . . E 3 6.302 -4.005 17.141 1 19.33 ? N2 PI6 101 B 1 HETATM 32 C CA2 PI6 . . . E 3 7.239 -5.1 16.804 1 19.02 ? CA2 PI6 101 B 1 HETATM 33 C C6 PI6 . . . E 3 6.869 -6.158 17.847 1 20.1 ? C6 PI6 101 B 1 HETATM 34 O O3 PI6 . . . E 3 6.85 -5.873 19.059 1 15.49 ? O3 PI6 101 B 1 HETATM 35 C CB2 PI6 . . . E 3 8.739 -4.777 17.039 1 21.47 ? CB2 PI6 101 B 1 HETATM 36 C CG11 PI6 . . . E 3 9.222 -3.621 16.161 1 19.12 ? CG11 PI6 101 B 1 HETATM 37 C CG2 PI6 . . . E 3 9.576 -6.027 16.773 1 17.63 ? CG2 PI6 101 B 1 HETATM 38 C CD12 PI6 . . . E 3 9.703 -4.059 14.843 1 30.21 ? CD12 PI6 101 B 1 HETATM 39 O OH PI6 . . . E 3 3.018 -8.249 16.778 1 26.79 ? OH PI6 101 B 1 HETATM 40 N N3 PI6 . . . E 3 6.543 -7.355 17.37 1 19.55 ? N3 PI6 101 B 1 HETATM 41 C CA3 PI6 . . . E 3 6.161 -8.448 18.247 1 21.89 ? CA3 PI6 101 B 1 HETATM 42 C C7 PI6 . . . E 3 5.077 -9.284 17.577 1 25.02 ? C7 PI6 101 B 1 HETATM 43 C C8 PI6 . . . E 3 3.687 -8.76 17.916 1 30.81 ? C8 PI6 101 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #