data_1MUJ # _model_server_result.job_id FOAdqOzsGS06sZn5HvMpwA _model_server_result.datetime_utc '2024-11-17 20:38:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1muj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 1MUJ # _exptl.entry_id 1MUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.48 _cell.angle_gamma 90 _cell.entry_id 1MUJ _cell.length_a 63.647 _cell.length_b 88.065 _cell.length_c 83.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 111 A CYS 107 1_555 A SG CYS 167 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 15 B CYS 15 1_555 B SG CYS 79 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 B SG CYS 118 B CYS 117 1_555 B SG CYS 174 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 122 A ASN 118 1_555 D C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale2 B ND2 ASN 19 B ASN 19 1_555 E C1 NAG . B NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1MUJ _atom_sites.fract_transf_matrix[1][1] 0.015712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011953 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 501 501 NAG NAG . E 4 NAG B 1 502 502 NAG NAG . F 5 HOH A 1 502 1 HOH HOH . F 5 HOH A 2 503 2 HOH HOH . F 5 HOH A 3 504 3 HOH HOH . F 5 HOH A 4 505 5 HOH HOH . F 5 HOH A 5 506 6 HOH HOH . F 5 HOH A 6 507 7 HOH HOH . F 5 HOH A 7 508 8 HOH HOH . F 5 HOH A 8 509 9 HOH HOH . F 5 HOH A 9 510 11 HOH HOH . F 5 HOH A 10 511 12 HOH HOH . F 5 HOH A 11 512 14 HOH HOH . F 5 HOH A 12 513 15 HOH HOH . F 5 HOH A 13 514 16 HOH HOH . F 5 HOH A 14 515 17 HOH HOH . F 5 HOH A 15 516 20 HOH HOH . F 5 HOH A 16 517 21 HOH HOH . F 5 HOH A 17 518 23 HOH HOH . F 5 HOH A 18 519 24 HOH HOH . F 5 HOH A 19 520 26 HOH HOH . F 5 HOH A 20 521 28 HOH HOH . F 5 HOH A 21 522 30 HOH HOH . F 5 HOH A 22 523 34 HOH HOH . F 5 HOH A 23 524 35 HOH HOH . F 5 HOH A 24 525 37 HOH HOH . F 5 HOH A 25 526 38 HOH HOH . F 5 HOH A 26 527 39 HOH HOH . F 5 HOH A 27 528 42 HOH HOH . F 5 HOH A 28 529 43 HOH HOH . F 5 HOH A 29 530 44 HOH HOH . F 5 HOH A 30 531 45 HOH HOH . F 5 HOH A 31 532 46 HOH HOH . F 5 HOH A 32 533 49 HOH HOH . F 5 HOH A 33 534 51 HOH HOH . F 5 HOH A 34 535 53 HOH HOH . F 5 HOH A 35 536 55 HOH HOH . F 5 HOH A 36 537 56 HOH HOH . F 5 HOH A 37 538 57 HOH HOH . F 5 HOH A 38 539 60 HOH HOH . F 5 HOH A 39 540 61 HOH HOH . F 5 HOH A 40 541 62 HOH HOH . F 5 HOH A 41 542 65 HOH HOH . F 5 HOH A 42 543 66 HOH HOH . F 5 HOH A 43 544 68 HOH HOH . F 5 HOH A 44 545 69 HOH HOH . F 5 HOH A 45 546 70 HOH HOH . F 5 HOH A 46 547 72 HOH HOH . F 5 HOH A 47 548 73 HOH HOH . F 5 HOH A 48 549 74 HOH HOH . F 5 HOH A 49 550 75 HOH HOH . F 5 HOH A 50 551 77 HOH HOH . F 5 HOH A 51 552 78 HOH HOH . F 5 HOH A 52 553 80 HOH HOH . F 5 HOH A 53 554 82 HOH HOH . F 5 HOH A 54 555 83 HOH HOH . F 5 HOH A 55 556 85 HOH HOH . F 5 HOH A 56 557 86 HOH HOH . F 5 HOH A 57 558 89 HOH HOH . F 5 HOH A 58 559 90 HOH HOH . F 5 HOH A 59 560 92 HOH HOH . F 5 HOH A 60 561 94 HOH HOH . F 5 HOH A 61 562 99 HOH HOH . F 5 HOH A 62 563 100 HOH HOH . F 5 HOH A 63 564 101 HOH HOH . F 5 HOH A 64 565 102 HOH HOH . F 5 HOH A 65 566 103 HOH HOH . F 5 HOH A 66 567 104 HOH HOH . F 5 HOH A 67 568 105 HOH HOH . F 5 HOH A 68 569 106 HOH HOH . F 5 HOH A 69 570 109 HOH HOH . F 5 HOH A 70 571 110 HOH HOH . F 5 HOH A 71 572 111 HOH HOH . F 5 HOH A 72 573 112 HOH HOH . F 5 HOH A 73 574 115 HOH HOH . F 5 HOH A 74 575 116 HOH HOH . F 5 HOH A 75 576 117 HOH HOH . F 5 HOH A 76 577 118 HOH HOH . F 5 HOH A 77 578 121 HOH HOH . F 5 HOH A 78 579 122 HOH HOH . F 5 HOH A 79 580 123 HOH HOH . F 5 HOH A 80 581 124 HOH HOH . F 5 HOH A 81 582 127 HOH HOH . F 5 HOH A 82 583 130 HOH HOH . F 5 HOH A 83 584 133 HOH HOH . F 5 HOH A 84 585 134 HOH HOH . F 5 HOH A 85 586 135 HOH HOH . F 5 HOH A 86 587 137 HOH HOH . F 5 HOH A 87 588 139 HOH HOH . F 5 HOH A 88 589 140 HOH HOH . F 5 HOH A 89 590 141 HOH HOH . F 5 HOH A 90 591 142 HOH HOH . F 5 HOH A 91 592 143 HOH HOH . F 5 HOH A 92 593 146 HOH HOH . F 5 HOH A 93 594 147 HOH HOH . F 5 HOH A 94 595 148 HOH HOH . F 5 HOH A 95 596 149 HOH HOH . F 5 HOH A 96 597 150 HOH HOH . F 5 HOH A 97 598 153 HOH HOH . F 5 HOH A 98 599 156 HOH HOH . F 5 HOH A 99 600 157 HOH HOH . F 5 HOH A 100 601 161 HOH HOH . F 5 HOH A 101 602 163 HOH HOH . F 5 HOH A 102 603 168 HOH HOH . G 5 HOH B 1 503 4 HOH HOH . G 5 HOH B 2 504 10 HOH HOH . G 5 HOH B 3 505 13 HOH HOH . G 5 HOH B 4 506 18 HOH HOH . G 5 HOH B 5 507 19 HOH HOH . G 5 HOH B 6 508 22 HOH HOH . G 5 HOH B 7 509 25 HOH HOH . G 5 HOH B 8 510 27 HOH HOH . G 5 HOH B 9 511 29 HOH HOH . G 5 HOH B 10 512 31 HOH HOH . G 5 HOH B 11 513 32 HOH HOH . G 5 HOH B 12 514 33 HOH HOH . G 5 HOH B 13 515 36 HOH HOH . G 5 HOH B 14 516 40 HOH HOH . G 5 HOH B 15 517 47 HOH HOH . G 5 HOH B 16 518 48 HOH HOH . G 5 HOH B 17 519 50 HOH HOH . G 5 HOH B 18 520 52 HOH HOH . G 5 HOH B 19 521 54 HOH HOH . G 5 HOH B 20 522 58 HOH HOH . G 5 HOH B 21 523 59 HOH HOH . G 5 HOH B 22 524 63 HOH HOH . G 5 HOH B 23 525 64 HOH HOH . G 5 HOH B 24 526 67 HOH HOH . G 5 HOH B 25 527 71 HOH HOH . G 5 HOH B 26 528 76 HOH HOH . G 5 HOH B 27 529 79 HOH HOH . G 5 HOH B 28 530 81 HOH HOH . G 5 HOH B 29 531 84 HOH HOH . G 5 HOH B 30 532 87 HOH HOH . G 5 HOH B 31 533 88 HOH HOH . G 5 HOH B 32 534 91 HOH HOH . G 5 HOH B 33 535 93 HOH HOH . G 5 HOH B 34 536 95 HOH HOH . G 5 HOH B 35 537 96 HOH HOH . G 5 HOH B 36 538 97 HOH HOH . G 5 HOH B 37 539 98 HOH HOH . G 5 HOH B 38 540 107 HOH HOH . G 5 HOH B 39 541 108 HOH HOH . G 5 HOH B 40 542 113 HOH HOH . G 5 HOH B 41 543 119 HOH HOH . G 5 HOH B 42 544 120 HOH HOH . G 5 HOH B 43 545 125 HOH HOH . G 5 HOH B 44 546 126 HOH HOH . G 5 HOH B 45 547 128 HOH HOH . G 5 HOH B 46 548 129 HOH HOH . G 5 HOH B 47 549 131 HOH HOH . G 5 HOH B 48 550 132 HOH HOH . G 5 HOH B 49 551 136 HOH HOH . G 5 HOH B 50 552 138 HOH HOH . G 5 HOH B 51 553 144 HOH HOH . G 5 HOH B 52 554 145 HOH HOH . G 5 HOH B 53 555 151 HOH HOH . G 5 HOH B 54 556 152 HOH HOH . G 5 HOH B 55 557 154 HOH HOH . G 5 HOH B 56 558 155 HOH HOH . G 5 HOH B 57 559 158 HOH HOH . G 5 HOH B 58 560 159 HOH HOH . G 5 HOH B 59 561 160 HOH HOH . G 5 HOH B 60 562 164 HOH HOH . G 5 HOH B 61 563 165 HOH HOH . G 5 HOH B 62 564 166 HOH HOH . G 5 HOH B 63 565 167 HOH HOH . G 5 HOH B 64 566 169 HOH HOH . G 5 HOH B 65 567 170 HOH HOH . G 5 HOH B 66 568 171 HOH HOH . H 5 HOH C 1 41 41 HOH HOH . H 5 HOH C 2 114 114 HOH HOH . H 5 HOH C 3 162 162 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 36.47 51.827 62.077 1 97.6 ? C1 NAG 502 B 1 HETATM 2 C C2 NAG . . . E 4 35.279 52.605 62.646 1 99.01 ? C2 NAG 502 B 1 HETATM 3 C C3 NAG . . . E 4 35.617 54.083 62.872 1 101.28 ? C3 NAG 502 B 1 HETATM 4 C C4 NAG . . . E 4 37.104 54.253 63.224 1 102.44 ? C4 NAG 502 B 1 HETATM 5 C C5 NAG . . . E 4 38.006 53.734 62.093 1 100.69 ? C5 NAG 502 B 1 HETATM 6 C C6 NAG . . . E 4 39.341 53.192 62.59 1 100.41 ? C6 NAG 502 B 1 HETATM 7 C C7 NAG . . . E 4 33.342 51.425 61.824 1 97.21 ? C7 NAG 502 B 1 HETATM 8 C C8 NAG . . . E 4 32.319 51.39 62.952 1 96.26 ? C8 NAG 502 B 1 HETATM 9 N N2 NAG . . . E 4 34.136 52.489 61.757 1 98.13 ? N2 NAG 502 B 1 HETATM 10 O O3 NAG . . . E 4 34.815 54.589 63.931 1 101.82 ? O3 NAG 502 B 1 HETATM 11 O O4 NAG . . . E 4 37.433 55.643 63.497 1 107.17 ? O4 NAG 502 B 1 HETATM 12 O O5 NAG . . . E 4 37.355 52.683 61.318 1 99.04 ? O5 NAG 502 B 1 HETATM 13 O O6 NAG . . . E 4 40.162 54.219 63.138 1 99.3 ? O6 NAG 502 B 1 HETATM 14 O O7 NAG . . . E 4 33.397 50.493 61.016 1 96.89 ? O7 NAG 502 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 1409 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 14 #