data_1MV5
#
_model_server_result.job_id            C-0Ls2QCbCBfmu0lGGze5w 
_model_server_result.datetime_utc      '2024-11-29 16:55:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":3600}' 
#
_entry.id    1MV5 
#
_exptl.entry_id    1MV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1MV5 
_cell.length_a            141.866 
_cell.length_b            141.866 
_cell.length_c            120.965 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G MG MG . C MG 1601 1_555 C OD1 ASP 12 C ASP 2353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc2 J O1A ADP . D ADP 3600 1_555 I MG MG . D MG 3601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc3 I MG MG . D MG 3601 1_555 N O HOH . D HOH 4046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? 
metalc ? metalc4 I MG MG . D MG 3601 1_555 N O HOH . D HOH 4078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1MV5 
_atom_sites.fract_transf_matrix[1][1]    0.007049 
_atom_sites.fract_transf_matrix[1][2]    0.00407 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008139 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATP A 1 601 601 ATP ATP . 
F 3 ADP B 1 1600 1600 ADP ADP . 
G 4 MG C 1 1601 1601 MG MG . 
H 2 ATP C 1 2601 2601 ATP ATP . 
I 4 MG D 1 3601 3601 MG MG . 
J 3 ADP D 1 3600 3600 ADP ADP . 
K 5 HOH A 1 4007 4007 HOH HOH . 
K 5 HOH A 2 4011 4011 HOH HOH . 
K 5 HOH A 3 4018 4018 HOH HOH . 
K 5 HOH A 4 4019 4019 HOH HOH . 
K 5 HOH A 5 4023 4023 HOH HOH . 
K 5 HOH A 6 4035 4035 HOH HOH . 
K 5 HOH A 7 4036 4036 HOH HOH . 
K 5 HOH A 8 4038 4038 HOH HOH . 
K 5 HOH A 9 4040 4040 HOH HOH . 
K 5 HOH A 10 4043 4043 HOH HOH . 
K 5 HOH A 11 4044 4044 HOH HOH . 
K 5 HOH A 12 4047 4047 HOH HOH . 
K 5 HOH A 13 4050 4050 HOH HOH . 
K 5 HOH A 14 4053 4053 HOH HOH . 
K 5 HOH A 15 4055 4055 HOH HOH . 
K 5 HOH A 16 4058 4058 HOH HOH . 
K 5 HOH A 17 4060 4060 HOH HOH . 
K 5 HOH A 18 4065 4065 HOH HOH . 
K 5 HOH A 19 4066 4066 HOH HOH . 
K 5 HOH A 20 4071 4071 HOH HOH . 
K 5 HOH A 21 4074 4074 HOH HOH . 
K 5 HOH A 22 4076 4076 HOH HOH . 
K 5 HOH A 23 4077 4077 HOH HOH . 
L 5 HOH B 1 4001 4001 HOH HOH . 
L 5 HOH B 2 4002 4002 HOH HOH . 
L 5 HOH B 3 4003 4003 HOH HOH . 
L 5 HOH B 4 4004 4004 HOH HOH . 
L 5 HOH B 5 4005 4005 HOH HOH . 
L 5 HOH B 6 4026 4026 HOH HOH . 
L 5 HOH B 7 4027 4027 HOH HOH . 
L 5 HOH B 8 4028 4028 HOH HOH . 
L 5 HOH B 9 4030 4030 HOH HOH . 
L 5 HOH B 10 4063 4063 HOH HOH . 
L 5 HOH B 11 4064 4064 HOH HOH . 
L 5 HOH B 12 4068 4068 HOH HOH . 
M 5 HOH C 1 4008 4008 HOH HOH . 
M 5 HOH C 2 4009 4009 HOH HOH . 
M 5 HOH C 3 4010 4010 HOH HOH . 
M 5 HOH C 4 4012 4012 HOH HOH . 
M 5 HOH C 5 4013 4013 HOH HOH . 
M 5 HOH C 6 4014 4014 HOH HOH . 
M 5 HOH C 7 4015 4015 HOH HOH . 
M 5 HOH C 8 4021 4021 HOH HOH . 
M 5 HOH C 9 4024 4024 HOH HOH . 
M 5 HOH C 10 4029 4029 HOH HOH . 
M 5 HOH C 11 4031 4031 HOH HOH . 
M 5 HOH C 12 4032 4032 HOH HOH . 
M 5 HOH C 13 4034 4034 HOH HOH . 
M 5 HOH C 14 4048 4048 HOH HOH . 
M 5 HOH C 15 4049 4049 HOH HOH . 
M 5 HOH C 16 4052 4052 HOH HOH . 
M 5 HOH C 17 4056 4056 HOH HOH . 
M 5 HOH C 18 4057 4057 HOH HOH . 
M 5 HOH C 19 4059 4059 HOH HOH . 
M 5 HOH C 20 4062 4062 HOH HOH . 
M 5 HOH C 21 4069 4069 HOH HOH . 
M 5 HOH C 22 4070 4070 HOH HOH . 
M 5 HOH C 23 4072 4072 HOH HOH . 
M 5 HOH C 24 4073 4073 HOH HOH . 
N 5 HOH D 1 4006 4006 HOH HOH . 
N 5 HOH D 2 4016 4016 HOH HOH . 
N 5 HOH D 3 4017 4017 HOH HOH . 
N 5 HOH D 4 4020 4020 HOH HOH . 
N 5 HOH D 5 4022 4022 HOH HOH . 
N 5 HOH D 6 4025 4025 HOH HOH . 
N 5 HOH D 7 4033 4033 HOH HOH . 
N 5 HOH D 8 4037 4037 HOH HOH . 
N 5 HOH D 9 4039 4039 HOH HOH . 
N 5 HOH D 10 4041 4041 HOH HOH . 
N 5 HOH D 11 4042 4042 HOH HOH . 
N 5 HOH D 12 4045 4045 HOH HOH . 
N 5 HOH D 13 4046 4046 HOH HOH . 
N 5 HOH D 14 4051 4051 HOH HOH . 
N 5 HOH D 15 4054 4054 HOH HOH . 
N 5 HOH D 16 4061 4061 HOH HOH . 
N 5 HOH D 17 4067 4067 HOH HOH . 
N 5 HOH D 18 4075 4075 HOH HOH . 
N 5 HOH D 19 4078 4078 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . J 3 48.003 25.879 82.268 1 35.7 ? PB ADP 3600 D 1 
HETATM 2 O O1B ADP . . . J 3 47.767 25.663 83.639 1 42.45 ? O1B ADP 3600 D 1 
HETATM 3 O O2B ADP . . . J 3 48.889 27.018 82.046 1 32.94 ? O2B ADP 3600 D 1 
HETATM 4 O O3B ADP . . . J 3 48.517 24.665 81.714 1 24.4 ? O3B ADP 3600 D 1 
HETATM 5 P PA ADP . . . J 3 45.383 26.91 82.286 1 25.95 ? PA ADP 3600 D 1 
HETATM 6 O O1A ADP . . . J 3 45.627 28.306 82.433 1 22.37 ? O1A ADP 3600 D 1 
HETATM 7 O O2A ADP . . . J 3 44.988 26.175 83.42 1 17.01 ? O2A ADP 3600 D 1 
HETATM 8 O O3A ADP . . . J 3 46.648 26.297 81.703 1 32.4 ? O3A ADP 3600 D 1 
HETATM 9 O O5' ADP . . . J 3 44.342 26.657 81.131 1 20.93 ? O5' ADP 3600 D 1 
HETATM 10 C C5' ADP . . . J 3 44.578 27.296 79.889 1 27.93 ? C5' ADP 3600 D 1 
HETATM 11 C C4' ADP . . . J 3 43.324 27.321 79.023 1 32.43 ? C4' ADP 3600 D 1 
HETATM 12 O O4' ADP . . . J 3 42.273 27.8 79.824 1 31.97 ? O4' ADP 3600 D 1 
HETATM 13 C C3' ADP . . . J 3 43.483 28.313 77.851 1 37.56 ? C3' ADP 3600 D 1 
HETATM 14 O O3' ADP . . . J 3 42.88 27.868 76.585 1 32.04 ? O3' ADP 3600 D 1 
HETATM 15 C C2' ADP . . . J 3 42.841 29.581 78.334 1 38.83 ? C2' ADP 3600 D 1 
HETATM 16 O O2' ADP . . . J 3 42.349 30.37 77.207 1 43.76 ? O2' ADP 3600 D 1 
HETATM 17 C C1' ADP . . . J 3 41.79 29.028 79.25 1 42.56 ? C1' ADP 3600 D 1 
HETATM 18 N N9 ADP . . . J 3 41.447 29.961 80.338 1 45.71 ? N9 ADP 3600 D 1 
HETATM 19 C C8 ADP . . . J 3 42.192 30.167 81.43 1 50.1 ? C8 ADP 3600 D 1 
HETATM 20 N N7 ADP . . . J 3 41.572 31.067 82.221 1 52.26 ? N7 ADP 3600 D 1 
HETATM 21 C C5 ADP . . . J 3 40.416 31.377 81.635 1 48.73 ? C5 ADP 3600 D 1 
HETATM 22 C C6 ADP . . . J 3 39.367 32.282 81.933 1 47.1 ? C6 ADP 3600 D 1 
HETATM 23 N N6 ADP . . . J 3 39.379 32.945 83.095 1 48.29 ? N6 ADP 3600 D 1 
HETATM 24 N N1 ADP . . . J 3 38.31 32.39 81.085 1 47.18 ? N1 ADP 3600 D 1 
HETATM 25 C C2 ADP . . . J 3 38.273 31.712 79.918 1 51.13 ? C2 ADP 3600 D 1 
HETATM 26 N N3 ADP . . . J 3 39.276 30.876 79.613 1 48.06 ? N3 ADP 3600 D 1 
HETATM 27 C C4 ADP . . . J 3 40.356 30.701 80.413 1 47.38 ? C4 ADP 3600 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#