data_1MVH # _model_server_result.job_id vlsUt8yPJw2Iucs5USElmg _model_server_result.datetime_utc '2024-11-26 15:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":504}' # _entry.id 1MVH # _exptl.entry_id 1MVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MVH _cell.length_a 75.07 _cell.length_b 75.07 _cell.length_c 190.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 69 A CYS 260 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A SG CYS 69 A CYS 260 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc3 A SG CYS 71 A CYS 262 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc4 A SG CYS 77 A CYS 268 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc5 A SG CYS 77 A CYS 268 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc6 A SG CYS 85 A CYS 276 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 A SG CYS 87 A CYS 278 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc8 A SG CYS 116 A CYS 307 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc9 A SG CYS 116 A CYS 307 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc10 A SG CYS 120 A CYS 311 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc11 A SG CYS 122 A CYS 313 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc12 A SG CYS 126 A CYS 317 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1MVH _atom_sites.fract_transf_matrix[1][1] 0.013321 _atom_sites.fract_transf_matrix[1][2] 0.007691 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 601 SO4 SO4 . C 3 ZN A 1 501 501 ZN ZN2 . D 3 ZN A 1 502 502 ZN ZN2 . E 3 ZN A 1 503 503 ZN ZN2 . F 4 NI A 1 504 504 NI NI2 . G 5 HOH A 1 1 1 HOH TIP . G 5 HOH A 2 2 2 HOH TIP . G 5 HOH A 3 3 3 HOH TIP . G 5 HOH A 4 4 4 HOH TIP . G 5 HOH A 5 5 5 HOH TIP . G 5 HOH A 6 6 6 HOH TIP . G 5 HOH A 7 7 7 HOH TIP . G 5 HOH A 8 8 8 HOH TIP . G 5 HOH A 9 9 9 HOH TIP . G 5 HOH A 10 10 10 HOH TIP . G 5 HOH A 11 11 11 HOH TIP . G 5 HOH A 12 12 12 HOH TIP . G 5 HOH A 13 13 13 HOH TIP . G 5 HOH A 14 14 14 HOH TIP . G 5 HOH A 15 15 15 HOH TIP . G 5 HOH A 16 16 16 HOH TIP . G 5 HOH A 17 17 17 HOH TIP . G 5 HOH A 18 18 18 HOH TIP . G 5 HOH A 19 19 19 HOH TIP . G 5 HOH A 20 20 20 HOH TIP . G 5 HOH A 21 21 21 HOH TIP . G 5 HOH A 22 22 22 HOH TIP . G 5 HOH A 23 23 23 HOH TIP . G 5 HOH A 24 24 24 HOH TIP . G 5 HOH A 25 25 25 HOH TIP . G 5 HOH A 26 26 26 HOH TIP . G 5 HOH A 27 27 27 HOH TIP . G 5 HOH A 28 28 28 HOH TIP . G 5 HOH A 29 29 29 HOH TIP . G 5 HOH A 30 30 30 HOH TIP . G 5 HOH A 31 31 31 HOH TIP . G 5 HOH A 32 32 32 HOH TIP . G 5 HOH A 33 33 33 HOH TIP . G 5 HOH A 34 34 34 HOH TIP . G 5 HOH A 35 35 35 HOH TIP . G 5 HOH A 36 36 36 HOH TIP . G 5 HOH A 37 37 37 HOH TIP . G 5 HOH A 38 38 38 HOH TIP . G 5 HOH A 39 39 39 HOH TIP . G 5 HOH A 40 40 40 HOH TIP . G 5 HOH A 41 41 41 HOH TIP . G 5 HOH A 42 42 42 HOH TIP . G 5 HOH A 43 43 43 HOH TIP . G 5 HOH A 44 44 44 HOH TIP . G 5 HOH A 45 45 45 HOH TIP . G 5 HOH A 46 46 46 HOH TIP . G 5 HOH A 47 47 47 HOH TIP . G 5 HOH A 48 48 48 HOH TIP . G 5 HOH A 49 49 49 HOH TIP . G 5 HOH A 50 50 50 HOH TIP . G 5 HOH A 51 51 51 HOH TIP . G 5 HOH A 52 52 52 HOH TIP . G 5 HOH A 53 53 53 HOH TIP . G 5 HOH A 54 54 54 HOH TIP . G 5 HOH A 55 55 55 HOH TIP . G 5 HOH A 56 56 56 HOH TIP . G 5 HOH A 57 57 57 HOH TIP . G 5 HOH A 58 58 58 HOH TIP . G 5 HOH A 59 59 59 HOH TIP . G 5 HOH A 60 60 60 HOH TIP . G 5 HOH A 61 61 61 HOH TIP . G 5 HOH A 62 62 62 HOH TIP . G 5 HOH A 63 63 63 HOH TIP . G 5 HOH A 64 64 64 HOH TIP . G 5 HOH A 65 65 65 HOH TIP . G 5 HOH A 66 66 66 HOH TIP . G 5 HOH A 67 67 67 HOH TIP . G 5 HOH A 68 68 68 HOH TIP . G 5 HOH A 69 69 69 HOH TIP . G 5 HOH A 70 70 70 HOH TIP . G 5 HOH A 71 71 71 HOH TIP . G 5 HOH A 72 72 72 HOH TIP . G 5 HOH A 73 73 73 HOH TIP . G 5 HOH A 74 74 74 HOH TIP . G 5 HOH A 75 75 75 HOH TIP . G 5 HOH A 76 76 76 HOH TIP . G 5 HOH A 77 77 77 HOH TIP . G 5 HOH A 78 78 78 HOH TIP . G 5 HOH A 79 79 79 HOH TIP . G 5 HOH A 80 80 80 HOH TIP . G 5 HOH A 81 81 81 HOH TIP . G 5 HOH A 82 82 82 HOH TIP . G 5 HOH A 83 83 83 HOH TIP . G 5 HOH A 84 84 84 HOH TIP . G 5 HOH A 85 85 85 HOH TIP . G 5 HOH A 86 86 86 HOH TIP . G 5 HOH A 87 87 87 HOH TIP . G 5 HOH A 88 88 88 HOH TIP . G 5 HOH A 89 89 89 HOH TIP . G 5 HOH A 90 90 90 HOH TIP . G 5 HOH A 91 91 91 HOH TIP . G 5 HOH A 92 92 92 HOH TIP . G 5 HOH A 93 93 93 HOH TIP . G 5 HOH A 94 94 94 HOH TIP . G 5 HOH A 95 95 95 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 44.423 _atom_site.Cartn_y 65.013 _atom_site.Cartn_z 0 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 35.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 1 #