data_1MVL # _model_server_result.job_id mzT57lCOiprYc5uUQrDxbA _model_server_result.datetime_utc '2025-03-21 11:44:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1MVL # _exptl.entry_id 1MVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MVL _cell.length_a 111.79 _cell.length_b 111.79 _cell.length_c 32.996 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1,2,3 A,B,C 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 111.79 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.895 96.81298 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1MVL _atom_sites.fract_transf_matrix[1][1] 0.008945 _atom_sites.fract_transf_matrix[1][2] 0.005165 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1001 1 FMN FMN . C 3 HOH A 1 1002 1 HOH TIP . C 3 HOH A 2 1003 2 HOH TIP . C 3 HOH A 3 1004 3 HOH TIP . C 3 HOH A 4 1005 4 HOH TIP . C 3 HOH A 5 1006 5 HOH TIP . C 3 HOH A 6 1007 6 HOH TIP . C 3 HOH A 7 1008 7 HOH TIP . C 3 HOH A 8 1009 8 HOH TIP . C 3 HOH A 9 1010 9 HOH TIP . C 3 HOH A 10 1011 10 HOH TIP . C 3 HOH A 11 1012 11 HOH TIP . C 3 HOH A 12 1013 12 HOH TIP . C 3 HOH A 13 1014 13 HOH TIP . C 3 HOH A 14 1015 14 HOH TIP . C 3 HOH A 15 1016 15 HOH TIP . C 3 HOH A 16 1017 16 HOH TIP . C 3 HOH A 17 1018 17 HOH TIP . C 3 HOH A 18 1019 18 HOH TIP . C 3 HOH A 19 1020 19 HOH TIP . C 3 HOH A 20 1021 20 HOH TIP . C 3 HOH A 21 1022 21 HOH TIP . C 3 HOH A 22 1023 22 HOH TIP . C 3 HOH A 23 1024 23 HOH TIP . C 3 HOH A 24 1025 24 HOH TIP . C 3 HOH A 25 1026 25 HOH TIP . C 3 HOH A 26 1027 26 HOH TIP . C 3 HOH A 27 1028 27 HOH TIP . C 3 HOH A 28 1029 28 HOH TIP . C 3 HOH A 29 1030 29 HOH TIP . C 3 HOH A 30 1031 30 HOH TIP . C 3 HOH A 31 1032 31 HOH TIP . C 3 HOH A 32 1033 32 HOH TIP . C 3 HOH A 33 1034 33 HOH TIP . C 3 HOH A 34 1035 34 HOH TIP . C 3 HOH A 35 1036 35 HOH TIP . C 3 HOH A 36 1037 36 HOH TIP . C 3 HOH A 37 1038 37 HOH TIP . C 3 HOH A 38 1039 38 HOH TIP . C 3 HOH A 39 1040 39 HOH TIP . C 3 HOH A 40 1041 40 HOH TIP . C 3 HOH A 41 1042 41 HOH TIP . C 3 HOH A 42 1043 42 HOH TIP . C 3 HOH A 43 1044 43 HOH TIP . C 3 HOH A 44 1045 44 HOH TIP . C 3 HOH A 45 1046 45 HOH TIP . C 3 HOH A 46 1047 46 HOH TIP . C 3 HOH A 47 1048 47 HOH TIP . C 3 HOH A 48 1049 48 HOH TIP . C 3 HOH A 49 1050 49 HOH TIP . C 3 HOH A 50 1051 50 HOH TIP . C 3 HOH A 51 1052 51 HOH TIP . C 3 HOH A 52 1053 52 HOH TIP . C 3 HOH A 53 1054 53 HOH TIP . C 3 HOH A 54 1055 54 HOH TIP . C 3 HOH A 55 1056 55 HOH TIP . C 3 HOH A 56 1057 56 HOH TIP . C 3 HOH A 57 1058 57 HOH TIP . C 3 HOH A 58 1059 58 HOH TIP . C 3 HOH A 59 1060 59 HOH TIP . C 3 HOH A 60 1061 60 HOH TIP . C 3 HOH A 61 1062 61 HOH TIP . C 3 HOH A 62 1063 62 HOH TIP . C 3 HOH A 63 1064 63 HOH TIP . C 3 HOH A 64 1065 64 HOH TIP . C 3 HOH A 65 1066 65 HOH TIP . C 3 HOH A 66 1067 66 HOH TIP . C 3 HOH A 67 1068 67 HOH TIP . C 3 HOH A 68 1069 68 HOH TIP . C 3 HOH A 69 1070 69 HOH TIP . C 3 HOH A 70 1071 70 HOH TIP . C 3 HOH A 71 1072 71 HOH TIP . C 3 HOH A 72 1073 72 HOH TIP . C 3 HOH A 73 1074 73 HOH TIP . C 3 HOH A 74 1075 74 HOH TIP . C 3 HOH A 75 1076 75 HOH TIP . C 3 HOH A 76 1077 76 HOH TIP . C 3 HOH A 77 1078 77 HOH TIP . C 3 HOH A 78 1079 78 HOH TIP . C 3 HOH A 79 1080 79 HOH TIP . C 3 HOH A 80 1081 80 HOH TIP . C 3 HOH A 81 1082 81 HOH TIP . C 3 HOH A 82 1083 82 HOH TIP . C 3 HOH A 83 1084 83 HOH TIP . C 3 HOH A 84 1085 84 HOH TIP . C 3 HOH A 85 1086 85 HOH TIP . C 3 HOH A 86 1087 86 HOH TIP . C 3 HOH A 87 1088 87 HOH TIP . C 3 HOH A 88 1089 88 HOH TIP . C 3 HOH A 89 1090 89 HOH TIP . C 3 HOH A 90 1091 90 HOH TIP . C 3 HOH A 91 1092 91 HOH TIP . C 3 HOH A 92 1093 92 HOH TIP . C 3 HOH A 93 1094 93 HOH TIP . C 3 HOH A 94 1095 94 HOH TIP . C 3 HOH A 95 1096 95 HOH TIP . C 3 HOH A 96 1097 96 HOH TIP . C 3 HOH A 97 1098 97 HOH TIP . C 3 HOH A 98 1099 98 HOH TIP . C 3 HOH A 99 1100 99 HOH TIP . C 3 HOH A 100 1101 100 HOH TIP . C 3 HOH A 101 1102 101 HOH TIP . C 3 HOH A 102 1103 102 HOH TIP . C 3 HOH A 103 1104 103 HOH TIP . C 3 HOH A 104 1105 104 HOH TIP . C 3 HOH A 105 1106 105 HOH TIP . C 3 HOH A 106 1107 106 HOH TIP . C 3 HOH A 107 1108 107 HOH TIP . C 3 HOH A 108 1109 108 HOH TIP . C 3 HOH A 109 1110 109 HOH TIP . C 3 HOH A 110 1111 110 HOH TIP . C 3 HOH A 111 1112 111 HOH TIP . C 3 HOH A 112 1113 112 HOH TIP . C 3 HOH A 113 1114 113 HOH TIP . C 3 HOH A 114 1115 114 HOH TIP . C 3 HOH A 115 1116 115 HOH TIP . C 3 HOH A 116 1117 116 HOH TIP . C 3 HOH A 117 1118 117 HOH TIP . C 3 HOH A 118 1119 118 HOH TIP . C 3 HOH A 119 1120 119 HOH TIP . C 3 HOH A 120 1121 120 HOH TIP . C 3 HOH A 121 1122 121 HOH TIP . C 3 HOH A 122 1123 122 HOH TIP . C 3 HOH A 123 1124 123 HOH TIP . C 3 HOH A 124 1125 124 HOH TIP . C 3 HOH A 125 1126 125 HOH TIP . C 3 HOH A 126 1127 126 HOH TIP . C 3 HOH A 127 1128 127 HOH TIP . C 3 HOH A 128 1129 128 HOH TIP . C 3 HOH A 129 1130 129 HOH TIP . C 3 HOH A 130 1131 130 HOH TIP . C 3 HOH A 131 1132 131 HOH TIP . C 3 HOH A 132 1133 132 HOH TIP . C 3 HOH A 133 1134 133 HOH TIP . C 3 HOH A 134 1135 134 HOH TIP . C 3 HOH A 135 1136 135 HOH TIP . C 3 HOH A 136 1137 136 HOH TIP . C 3 HOH A 137 1138 137 HOH TIP . C 3 HOH A 138 1139 138 HOH TIP . C 3 HOH A 139 1140 139 HOH TIP . C 3 HOH A 140 1141 140 HOH TIP . C 3 HOH A 141 1142 141 HOH TIP . C 3 HOH A 142 1143 142 HOH TIP . C 3 HOH A 143 1144 143 HOH TIP . C 3 HOH A 144 1145 144 HOH TIP . C 3 HOH A 145 1146 145 HOH TIP . C 3 HOH A 146 1147 146 HOH TIP . C 3 HOH A 147 1148 147 HOH TIP . C 3 HOH A 148 1149 148 HOH TIP . C 3 HOH A 149 1150 149 HOH TIP . C 3 HOH A 150 1151 150 HOH TIP . C 3 HOH A 151 1152 151 HOH TIP . C 3 HOH A 152 1153 152 HOH TIP . C 3 HOH A 153 1154 153 HOH TIP . C 3 HOH A 154 1155 154 HOH TIP . C 3 HOH A 155 1156 155 HOH TIP . C 3 HOH A 156 1157 156 HOH TIP . C 3 HOH A 157 1158 157 HOH TIP . C 3 HOH A 158 1159 158 HOH TIP . C 3 HOH A 159 1160 159 HOH TIP . C 3 HOH A 160 1161 160 HOH TIP . C 3 HOH A 161 1162 161 HOH TIP . C 3 HOH A 162 1163 162 HOH TIP . C 3 HOH A 163 1164 163 HOH TIP . C 3 HOH A 164 1165 164 HOH TIP . C 3 HOH A 165 1166 165 HOH TIP . C 3 HOH A 166 1167 166 HOH TIP . C 3 HOH A 167 1168 167 HOH TIP . C 3 HOH A 168 1169 168 HOH TIP . C 3 HOH A 169 1170 169 HOH TIP . C 3 HOH A 170 1171 170 HOH TIP . C 3 HOH A 171 1172 171 HOH TIP . C 3 HOH A 172 1173 172 HOH TIP . C 3 HOH A 173 1174 173 HOH TIP . C 3 HOH A 174 1175 174 HOH TIP . C 3 HOH A 175 1176 175 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 64.04 20.001 -16.552 1 31.45 ? N1 FMN 1001 A 1 HETATM 2 C C2 FMN . . . B 2 63.731 19.066 -15.602 1 27.35 ? C2 FMN 1001 A 1 HETATM 3 O O2 FMN . . . B 2 63.097 19.308 -14.623 1 24.66 ? O2 FMN 1001 A 1 HETATM 4 N N3 FMN . . . B 2 64.2 17.723 -15.778 1 29.63 ? N3 FMN 1001 A 1 HETATM 5 C C4 FMN . . . B 2 64.958 17.292 -16.831 1 27.91 ? C4 FMN 1001 A 1 HETATM 6 O O4 FMN . . . B 2 65.351 16.124 -16.9 1 25.46 ? O4 FMN 1001 A 1 HETATM 7 C C4A FMN . . . B 2 65.311 18.288 -17.813 1 25.8 ? C4A FMN 1001 A 1 HETATM 8 N N5 FMN . . . B 2 66.038 17.956 -18.876 1 30.42 ? N5 FMN 1001 A 1 HETATM 9 C C5A FMN . . . B 2 66.235 18.882 -19.869 1 27.85 ? C5A FMN 1001 A 1 HETATM 10 C C6 FMN . . . B 2 66.956 18.511 -21.084 1 27.4 ? C6 FMN 1001 A 1 HETATM 11 C C7 FMN . . . B 2 67.33 19.428 -22.031 1 28.34 ? C7 FMN 1001 A 1 HETATM 12 C C7M FMN . . . B 2 68.065 19.013 -23.302 1 30.3 ? C7M FMN 1001 A 1 HETATM 13 C C8 FMN . . . B 2 66.818 20.801 -21.953 1 33.57 ? C8 FMN 1001 A 1 HETATM 14 C C8M FMN . . . B 2 67.107 21.812 -23.034 1 27.6 ? C8M FMN 1001 A 1 HETATM 15 C C9 FMN . . . B 2 66.152 21.172 -20.791 1 30.92 ? C9 FMN 1001 A 1 HETATM 16 C C9A FMN . . . B 2 65.856 20.269 -19.741 1 30.47 ? C9A FMN 1001 A 1 HETATM 17 N N10 FMN . . . B 2 65.14 20.608 -18.545 1 30.23 ? N10 FMN 1001 A 1 HETATM 18 C C10 FMN . . . B 2 64.797 19.666 -17.595 1 28.95 ? C10 FMN 1001 A 1 HETATM 19 C C1' FMN . . . B 2 64.669 21.998 -18.386 1 29.76 ? C1' FMN 1001 A 1 HETATM 20 C C2' FMN . . . B 2 63.172 22.021 -18.841 1 32.43 ? C2' FMN 1001 A 1 HETATM 21 O O2' FMN . . . B 2 62.932 21.447 -20.137 1 27.16 ? O2' FMN 1001 A 1 HETATM 22 C C3' FMN . . . B 2 62.604 23.479 -18.797 1 31.09 ? C3' FMN 1001 A 1 HETATM 23 O O3' FMN . . . B 2 62.617 23.992 -17.432 1 32.95 ? O3' FMN 1001 A 1 HETATM 24 C C4' FMN . . . B 2 61.183 23.654 -19.386 1 33.9 ? C4' FMN 1001 A 1 HETATM 25 O O4' FMN . . . B 2 60.834 25.05 -19.442 1 26.31 ? O4' FMN 1001 A 1 HETATM 26 C C5' FMN . . . B 2 60.079 22.936 -18.638 1 29.08 ? C5' FMN 1001 A 1 HETATM 27 O O5' FMN . . . B 2 58.836 23.017 -19.367 1 24.01 ? O5' FMN 1001 A 1 HETATM 28 P P FMN . . . B 2 57.493 22.441 -18.72 1 21.86 ? P FMN 1001 A 1 HETATM 29 O O1P FMN . . . B 2 57.709 22.362 -17.23 1 25 ? O1P FMN 1001 A 1 HETATM 30 O O2P FMN . . . B 2 57.264 21.139 -19.345 1 24.77 ? O2P FMN 1001 A 1 HETATM 31 O O3P FMN . . . B 2 56.385 23.485 -19.057 1 22.52 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #