data_1MVQ # _model_server_result.job_id DM_0yHWJ2k_booEpe7hWTw _model_server_result.datetime_utc '2024-11-04 23:10:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":237}' # _entry.id 1MVQ # _exptl.entry_id 1MVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MVQ _cell.length_a 63.449 _cell.length_b 77.956 _cell.length_c 105.323 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 77.956 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 105.323 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 77.956 105.323 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 D MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 D MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 A OD1 ASP 19 A ASP 19 1_555 D MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 D MN MN . A MN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 C CA CA . A CA 238 1_555 E O HOH . A HOH 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc11 C CA CA . A CA 238 1_555 E O HOH . A HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc12 D MN MN . A MN 239 1_555 E O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc13 D MN MN . A MN 239 1_555 E O HOH . A HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 205 n n C1 O1 MMA sing 206 n n C1 O5 MMA sing 207 n n C1 H1 MMA sing 208 n n C2 C3 MMA sing 209 n n C2 O2 MMA sing 210 n n C2 H2 MMA sing 211 n n C3 C4 MMA sing 212 n n C3 O3 MMA sing 213 n n C3 H3 MMA sing 214 n n C4 C5 MMA sing 215 n n C4 O4 MMA sing 216 n n C4 H4 MMA sing 217 n n C5 C6 MMA sing 218 n n C5 O5 MMA sing 219 n n C5 H5 MMA sing 220 n n C6 O6 MMA sing 221 n n C6 H61 MMA sing 222 n n C6 H62 MMA sing 223 n n C7 O1 MMA sing 224 n n C7 H71 MMA sing 225 n n C7 H72 MMA sing 226 n n C7 H73 MMA sing 227 n n O2 HO2 MMA sing 228 n n O3 HO3 MMA sing 229 n n O4 HO4 MMA sing 230 n n O6 HO6 MMA sing 231 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 1MVQ _atom_sites.fract_transf_matrix[1][1] 0.015761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MMA A 1 237 1 MMA MMA . C 3 CA A 1 238 237 CA CA . D 4 MN A 1 239 238 MN MN . E 5 HOH A 1 240 2 HOH HOH . E 5 HOH A 2 241 3 HOH HOH . E 5 HOH A 3 242 4 HOH HOH . E 5 HOH A 4 243 5 HOH HOH . E 5 HOH A 5 244 6 HOH HOH . E 5 HOH A 6 245 7 HOH HOH . E 5 HOH A 7 246 8 HOH HOH . E 5 HOH A 8 247 9 HOH HOH . E 5 HOH A 9 248 10 HOH HOH . E 5 HOH A 10 249 11 HOH HOH . E 5 HOH A 11 250 12 HOH HOH . E 5 HOH A 12 251 13 HOH HOH . E 5 HOH A 13 252 14 HOH HOH . E 5 HOH A 14 253 15 HOH HOH . E 5 HOH A 15 254 16 HOH HOH . E 5 HOH A 16 255 17 HOH HOH . E 5 HOH A 17 256 18 HOH HOH . E 5 HOH A 18 257 19 HOH HOH . E 5 HOH A 19 258 20 HOH HOH . E 5 HOH A 20 259 21 HOH HOH . E 5 HOH A 21 260 22 HOH HOH . E 5 HOH A 22 261 23 HOH HOH . E 5 HOH A 23 262 24 HOH HOH . E 5 HOH A 24 263 25 HOH HOH . E 5 HOH A 25 264 26 HOH HOH . E 5 HOH A 26 265 27 HOH HOH . E 5 HOH A 27 266 28 HOH HOH . E 5 HOH A 28 267 29 HOH HOH . E 5 HOH A 29 268 30 HOH HOH . E 5 HOH A 30 269 31 HOH HOH . E 5 HOH A 31 270 32 HOH HOH . E 5 HOH A 32 271 33 HOH HOH . E 5 HOH A 33 272 34 HOH HOH . E 5 HOH A 34 273 35 HOH HOH . E 5 HOH A 35 274 36 HOH HOH . E 5 HOH A 36 275 37 HOH HOH . E 5 HOH A 37 276 38 HOH HOH . E 5 HOH A 38 277 39 HOH HOH . E 5 HOH A 39 278 40 HOH HOH . E 5 HOH A 40 279 41 HOH HOH . E 5 HOH A 41 280 42 HOH HOH . E 5 HOH A 42 281 43 HOH HOH . E 5 HOH A 43 282 44 HOH HOH . E 5 HOH A 44 283 45 HOH HOH . E 5 HOH A 45 284 46 HOH HOH . E 5 HOH A 46 285 47 HOH HOH . E 5 HOH A 47 286 48 HOH HOH . E 5 HOH A 48 287 49 HOH HOH . E 5 HOH A 49 288 50 HOH HOH . E 5 HOH A 50 289 51 HOH HOH . E 5 HOH A 51 290 52 HOH HOH . E 5 HOH A 52 291 53 HOH HOH . E 5 HOH A 53 292 54 HOH HOH . E 5 HOH A 54 293 55 HOH HOH . E 5 HOH A 55 294 56 HOH HOH . E 5 HOH A 56 295 57 HOH HOH . E 5 HOH A 57 296 58 HOH HOH . E 5 HOH A 58 297 59 HOH HOH . E 5 HOH A 59 298 60 HOH HOH . E 5 HOH A 60 299 61 HOH HOH . E 5 HOH A 61 300 62 HOH HOH . E 5 HOH A 62 301 63 HOH HOH . E 5 HOH A 63 302 64 HOH HOH . E 5 HOH A 64 303 65 HOH HOH . E 5 HOH A 65 304 66 HOH HOH . E 5 HOH A 66 305 67 HOH HOH . E 5 HOH A 67 306 68 HOH HOH . E 5 HOH A 68 307 69 HOH HOH . E 5 HOH A 69 308 70 HOH HOH . E 5 HOH A 70 309 71 HOH HOH . E 5 HOH A 71 310 72 HOH HOH . E 5 HOH A 72 311 73 HOH HOH . E 5 HOH A 73 312 74 HOH HOH . E 5 HOH A 74 313 75 HOH HOH . E 5 HOH A 75 314 76 HOH HOH . E 5 HOH A 76 315 77 HOH HOH . E 5 HOH A 77 316 78 HOH HOH . E 5 HOH A 78 317 79 HOH HOH . E 5 HOH A 79 318 80 HOH HOH . E 5 HOH A 80 319 81 HOH HOH . E 5 HOH A 81 320 82 HOH HOH . E 5 HOH A 82 321 83 HOH HOH . E 5 HOH A 83 322 84 HOH HOH . E 5 HOH A 84 323 85 HOH HOH . E 5 HOH A 85 324 86 HOH HOH . E 5 HOH A 86 325 87 HOH HOH . E 5 HOH A 87 326 88 HOH HOH . E 5 HOH A 88 327 89 HOH HOH . E 5 HOH A 89 328 90 HOH HOH . E 5 HOH A 90 329 91 HOH HOH . E 5 HOH A 91 330 92 HOH HOH . E 5 HOH A 92 331 93 HOH HOH . E 5 HOH A 93 332 94 HOH HOH . E 5 HOH A 94 333 95 HOH HOH . E 5 HOH A 95 334 96 HOH HOH . E 5 HOH A 96 335 97 HOH HOH . E 5 HOH A 97 336 98 HOH HOH . E 5 HOH A 98 337 99 HOH HOH . E 5 HOH A 99 338 100 HOH HOH . E 5 HOH A 100 339 101 HOH HOH . E 5 HOH A 101 340 102 HOH HOH . E 5 HOH A 102 341 103 HOH HOH . E 5 HOH A 103 342 104 HOH HOH . E 5 HOH A 104 343 105 HOH HOH . E 5 HOH A 105 344 106 HOH HOH . E 5 HOH A 106 345 107 HOH HOH . E 5 HOH A 107 346 108 HOH HOH . E 5 HOH A 108 347 109 HOH HOH . E 5 HOH A 109 348 110 HOH HOH . E 5 HOH A 110 349 111 HOH HOH . E 5 HOH A 111 350 112 HOH HOH . E 5 HOH A 112 351 113 HOH HOH . E 5 HOH A 113 352 114 HOH HOH . E 5 HOH A 114 353 115 HOH HOH . E 5 HOH A 115 354 116 HOH HOH . E 5 HOH A 116 355 117 HOH HOH . E 5 HOH A 117 356 118 HOH HOH . E 5 HOH A 118 357 119 HOH HOH . E 5 HOH A 119 358 120 HOH HOH . E 5 HOH A 120 359 121 HOH HOH . E 5 HOH A 121 360 122 HOH HOH . E 5 HOH A 122 361 123 HOH HOH . E 5 HOH A 123 362 124 HOH HOH . E 5 HOH A 124 363 125 HOH HOH . E 5 HOH A 125 364 126 HOH HOH . E 5 HOH A 126 365 127 HOH HOH . E 5 HOH A 127 366 128 HOH HOH . E 5 HOH A 128 367 129 HOH HOH . E 5 HOH A 129 368 130 HOH HOH . E 5 HOH A 130 369 131 HOH HOH . E 5 HOH A 131 370 132 HOH HOH . E 5 HOH A 132 371 133 HOH HOH . E 5 HOH A 133 372 134 HOH HOH . E 5 HOH A 134 373 135 HOH HOH . E 5 HOH A 135 374 136 HOH HOH . E 5 HOH A 136 375 137 HOH HOH . E 5 HOH A 137 376 138 HOH HOH . E 5 HOH A 138 377 139 HOH HOH . E 5 HOH A 139 378 140 HOH HOH . E 5 HOH A 140 379 141 HOH HOH . E 5 HOH A 141 380 142 HOH HOH . E 5 HOH A 142 381 143 HOH HOH . E 5 HOH A 143 382 144 HOH HOH . E 5 HOH A 144 383 145 HOH HOH . E 5 HOH A 145 384 146 HOH HOH . E 5 HOH A 146 385 147 HOH HOH . E 5 HOH A 147 386 148 HOH HOH . E 5 HOH A 148 387 149 HOH HOH . E 5 HOH A 149 388 150 HOH HOH . E 5 HOH A 150 389 151 HOH HOH . E 5 HOH A 151 390 152 HOH HOH . E 5 HOH A 152 391 153 HOH HOH . E 5 HOH A 153 392 154 HOH HOH . E 5 HOH A 154 393 155 HOH HOH . E 5 HOH A 155 394 156 HOH HOH . E 5 HOH A 156 395 157 HOH HOH . E 5 HOH A 157 396 158 HOH HOH . E 5 HOH A 158 397 159 HOH HOH . E 5 HOH A 159 398 160 HOH HOH . E 5 HOH A 160 399 161 HOH HOH . E 5 HOH A 161 400 162 HOH HOH . E 5 HOH A 162 401 163 HOH HOH . E 5 HOH A 163 402 164 HOH HOH . E 5 HOH A 164 403 165 HOH HOH . E 5 HOH A 165 404 166 HOH HOH . E 5 HOH A 166 405 167 HOH HOH . E 5 HOH A 167 406 168 HOH HOH . E 5 HOH A 168 407 169 HOH HOH . E 5 HOH A 169 408 170 HOH HOH . E 5 HOH A 170 409 171 HOH HOH . E 5 HOH A 171 410 172 HOH HOH . E 5 HOH A 172 411 173 HOH HOH . E 5 HOH A 173 412 174 HOH HOH . E 5 HOH A 174 413 175 HOH HOH . E 5 HOH A 175 414 176 HOH HOH . E 5 HOH A 176 415 177 HOH HOH . E 5 HOH A 177 416 178 HOH HOH . E 5 HOH A 178 417 179 HOH HOH . E 5 HOH A 179 418 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . B 2 25.341 13.607 28.846 1 19.72 ? C1 MMA 237 A 1 HETATM 2 C C2 MMA . . . B 2 23.847 13.272 29.039 1 18.43 ? C2 MMA 237 A 1 HETATM 3 C C3 MMA . . . B 2 22.956 14.454 28.671 1 18.54 ? C3 MMA 237 A 1 HETATM 4 C C4 MMA . . . B 2 23.375 15.734 29.441 1 16.28 ? C4 MMA 237 A 1 HETATM 5 C C5 MMA . . . B 2 24.878 15.984 29.195 1 18.87 ? C5 MMA 237 A 1 HETATM 6 C C6 MMA . . . B 2 25.425 17.178 29.966 1 18.8 ? C6 MMA 237 A 1 HETATM 7 C C7 MMA . . . B 2 26.892 13.931 27.061 1 20.19 ? C7 MMA 237 A 1 HETATM 8 O O1 MMA . . . B 2 25.506 13.801 27.445 1 18.56 ? O1 MMA 237 A 1 HETATM 9 O O2 MMA . . . B 2 23.673 12.906 30.412 1 21.68 ? O2 MMA 237 A 1 HETATM 10 O O3 MMA . . . B 2 21.566 14.14 29.014 1 19.09 ? O3 MMA 237 A 1 HETATM 11 O O4 MMA . . . B 2 22.562 16.838 28.958 1 16.19 ? O4 MMA 237 A 1 HETATM 12 O O5 MMA . . . B 2 25.667 14.821 29.551 1 17.93 ? O5 MMA 237 A 1 HETATM 13 O O6 MMA . . . B 2 25.332 16.897 31.355 1 18.44 ? O6 MMA 237 A 1 # _model_server_stats.io_time_ms 93 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #