data_1MVS # _model_server_result.job_id cbKD4jPaKEPqsC-SjJf9Uw _model_server_result.datetime_utc '2024-11-07 01:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":187}' # _entry.id 1MVS # _exptl.entry_id 1MVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,4-DIAMINO-6-[N-(3',4',5'-TRIMETHOXYBENZYL)-N-METHYLAMINO]PYRIDO[2,3-D]PYRIMIDINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MVS _cell.length_a 85.486 _cell.length_b 85.486 _cell.length_c 77.612 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H22 N6 O3' _chem_comp.formula_weight 370.406 _chem_comp.id DTM _chem_comp.mon_nstd_flag . _chem_comp.name "2,4-DIAMINO-6-[N-(3',4',5'-TRIMETHOXYBENZYL)-N-METHYLAMINO]PYRIDO[2,3-D]PYRIMIDINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2B N1' DTM doub 83 n y C2B N2' DTM sing 84 n n C2B N3' DTM sing 85 n y C4B C4A DTM sing 86 n y C4B N3' DTM doub 87 n y C4B N4' DTM sing 88 n n C4A C5B DTM doub 89 n y C4A C8A DTM sing 90 n y C5B C6B DTM sing 91 n y C5B H5' DTM sing 92 n n C6B C7' DTM doub 93 n y C6B N9' DTM sing 94 n n C7' N8' DTM sing 95 n y C7' H7' DTM sing 96 n n C8A N1' DTM sing 97 n y C8A N8' DTM doub 98 n y C9' C1' DTM sing 99 n n C9' N9' DTM sing 100 n n C9' HC91 DTM sing 101 n n C9' HC92 DTM sing 102 n n C1' C2' DTM doub 103 n y C1' C6' DTM sing 104 n y C2' C3' DTM sing 105 n y C2' H2' DTM sing 106 n n C3' C4' DTM doub 107 n y C3' O3' DTM sing 108 n n C4' C5' DTM sing 109 n y C4' O4' DTM sing 110 n n C5' C6' DTM doub 111 n y C5' O5' DTM sing 112 n n C6' H6' DTM sing 113 n n C31 O3' DTM sing 114 n n C31 H311 DTM sing 115 n n C31 H312 DTM sing 116 n n C31 H313 DTM sing 117 n n C41 O4' DTM sing 118 n n C41 H411 DTM sing 119 n n C41 H412 DTM sing 120 n n C41 H413 DTM sing 121 n n C51 O5' DTM sing 122 n n C51 H511 DTM sing 123 n n C51 H512 DTM sing 124 n n C51 H513 DTM sing 125 n n CN' N9' DTM sing 126 n n CN' HCN1 DTM sing 127 n n CN' HCN2 DTM sing 128 n n CN' HCN3 DTM sing 129 n n N2' HN21 DTM sing 130 n n N2' HN22 DTM sing 131 n n N4' HN41 DTM sing 132 n n N4' HN42 DTM sing 133 n n # _atom_sites.entry_id 1MVS _atom_sites.fract_transf_matrix[1][1] 0.011698 _atom_sites.fract_transf_matrix[1][2] 0.006754 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 188 188 SO4 SUL . C 2 SO4 A 1 189 189 SO4 SUL . D 3 DTM A 1 187 187 DTM COE . E 4 HOH A 1 190 190 HOH HOH . E 4 HOH A 2 191 191 HOH HOH . E 4 HOH A 3 192 192 HOH HOH . E 4 HOH A 4 193 193 HOH HOH . E 4 HOH A 5 194 194 HOH HOH . E 4 HOH A 6 195 195 HOH HOH . E 4 HOH A 7 196 196 HOH HOH . E 4 HOH A 8 197 197 HOH HOH . E 4 HOH A 9 198 198 HOH HOH . E 4 HOH A 10 199 199 HOH HOH . E 4 HOH A 11 200 200 HOH HOH . E 4 HOH A 12 201 201 HOH HOH . E 4 HOH A 13 202 202 HOH HOH . E 4 HOH A 14 203 203 HOH HOH . E 4 HOH A 15 204 204 HOH HOH . E 4 HOH A 16 205 205 HOH HOH . E 4 HOH A 17 206 206 HOH HOH . E 4 HOH A 18 207 207 HOH HOH . E 4 HOH A 19 208 208 HOH HOH . E 4 HOH A 20 209 209 HOH HOH . E 4 HOH A 21 210 210 HOH HOH . E 4 HOH A 22 211 211 HOH HOH . E 4 HOH A 23 212 212 HOH HOH . E 4 HOH A 24 213 213 HOH HOH . E 4 HOH A 25 214 214 HOH HOH . E 4 HOH A 26 215 215 HOH HOH . E 4 HOH A 27 216 216 HOH HOH . E 4 HOH A 28 217 217 HOH HOH . E 4 HOH A 29 218 218 HOH HOH . E 4 HOH A 30 219 219 HOH HOH . E 4 HOH A 31 220 220 HOH HOH . E 4 HOH A 32 221 221 HOH HOH . E 4 HOH A 33 222 222 HOH HOH . E 4 HOH A 34 223 223 HOH HOH . E 4 HOH A 35 224 224 HOH HOH . E 4 HOH A 36 225 225 HOH HOH . E 4 HOH A 37 226 226 HOH HOH . E 4 HOH A 38 227 227 HOH HOH . E 4 HOH A 39 228 228 HOH HOH . E 4 HOH A 40 229 229 HOH HOH . E 4 HOH A 41 230 230 HOH HOH . E 4 HOH A 42 231 231 HOH HOH . E 4 HOH A 43 232 232 HOH HOH . E 4 HOH A 44 233 233 HOH HOH . E 4 HOH A 45 234 234 HOH HOH . E 4 HOH A 46 235 235 HOH HOH . E 4 HOH A 47 236 236 HOH HOH . E 4 HOH A 48 237 237 HOH HOH . E 4 HOH A 49 238 238 HOH HOH . E 4 HOH A 50 239 239 HOH HOH . E 4 HOH A 51 240 240 HOH HOH . E 4 HOH A 52 241 241 HOH HOH . E 4 HOH A 53 242 242 HOH HOH . E 4 HOH A 54 243 243 HOH HOH . E 4 HOH A 55 244 244 HOH HOH . E 4 HOH A 56 245 245 HOH HOH . E 4 HOH A 57 246 246 HOH HOH . E 4 HOH A 58 247 247 HOH HOH . E 4 HOH A 59 248 248 HOH HOH . E 4 HOH A 60 249 249 HOH HOH . E 4 HOH A 61 250 250 HOH HOH . E 4 HOH A 62 251 251 HOH HOH . E 4 HOH A 63 252 252 HOH HOH . E 4 HOH A 64 253 253 HOH HOH . E 4 HOH A 65 254 254 HOH HOH . E 4 HOH A 66 255 255 HOH HOH . E 4 HOH A 67 256 256 HOH HOH . E 4 HOH A 68 257 257 HOH HOH . E 4 HOH A 69 258 258 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2B DTM . . . D 3 27.39 12.611 -4.512 1 23.19 ? C2B DTM 187 A 1 HETATM 2 C C4B DTM . . . D 3 26.851 12.663 -2.195 1 23.49 ? C4B DTM 187 A 1 HETATM 3 C C4A DTM . . . D 3 28.153 13.072 -1.921 1 24.45 ? C4A DTM 187 A 1 HETATM 4 C C5B DTM . . . D 3 28.701 13.333 -0.652 1 26.18 ? C5B DTM 187 A 1 HETATM 5 C C6B DTM . . . D 3 30.033 13.705 -0.421 1 26.8 ? C6B DTM 187 A 1 HETATM 6 C C7' DTM . . . D 3 30.853 13.813 -1.593 1 26.82 ? C7' DTM 187 A 1 HETATM 7 C C8A DTM . . . D 3 29.06 13.184 -3.001 1 25.36 ? C8A DTM 187 A 1 HETATM 8 C C9' DTM . . . D 3 32.047 13.839 1.096 1 26.67 ? C9' DTM 187 A 1 HETATM 9 C C1' DTM . . . D 3 32.641 15.174 0.636 1 26.9 ? C1' DTM 187 A 1 HETATM 10 C C2' DTM . . . D 3 31.855 16.315 0.443 1 26.88 ? C2' DTM 187 A 1 HETATM 11 C C3' DTM . . . D 3 32.505 17.457 0.024 1 27.95 ? C3' DTM 187 A 1 HETATM 12 C C4' DTM . . . D 3 33.877 17.521 -0.234 1 28.23 ? C4' DTM 187 A 1 HETATM 13 C C5' DTM . . . D 3 34.666 16.404 -0.03 1 27.99 ? C5' DTM 187 A 1 HETATM 14 C C6' DTM . . . D 3 34.035 15.178 0.426 1 27.23 ? C6' DTM 187 A 1 HETATM 15 C C31 DTM . . . D 3 31.275 19.199 0.951 1 30.08 ? C31 DTM 187 A 1 HETATM 16 C C41 DTM . . . D 3 35.429 18.771 -1.697 1 29.5 ? C41 DTM 187 A 1 HETATM 17 C C51 DTM . . . D 3 36.562 15.129 -0.145 1 27.24 ? C51 DTM 187 A 1 HETATM 18 C CN' DTM . . . D 3 29.686 14.054 2.05 1 27.76 ? CN' DTM 187 A 1 HETATM 19 N N1' DTM . . . D 3 28.641 12.965 -4.275 1 23.83 ? N1' DTM 187 A 1 HETATM 20 N N2' DTM . . . D 3 26.978 12.368 -5.774 1 22.83 ? N2' DTM 187 A 1 HETATM 21 N N3' DTM . . . D 3 26.5 12.47 -3.489 1 22.88 ? N3' DTM 187 A 1 HETATM 22 N N4' DTM . . . D 3 25.753 12.445 -1.425 1 22.86 ? N4' DTM 187 A 1 HETATM 23 N N8' DTM . . . D 3 30.357 13.537 -2.831 1 25.73 ? N8' DTM 187 A 1 HETATM 24 N N9' DTM . . . D 3 30.515 13.954 0.843 1 27.82 ? N9' DTM 187 A 1 HETATM 25 O O3' DTM . . . D 3 31.915 18.693 -0.235 1 28.99 ? O3' DTM 187 A 1 HETATM 26 O O4' DTM . . . D 3 34.426 18.72 -0.663 1 29.66 ? O4' DTM 187 A 1 HETATM 27 O O5' DTM . . . D 3 36.026 16.472 -0.324 1 27.47 ? O5' DTM 187 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #