data_1MXA # _model_server_result.job_id xQRJb_CzPAXaD9xd4Q8I3w _model_server_result.datetime_utc '2024-10-19 10:17:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":385}' # _entry.id 1MXA # _exptl.entry_id 1MXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MXA _cell.length_a 128.9 _cell.length_b 128.9 _cell.length_c 139.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.6 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 16 A ASP 16 9_555 D MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc2 A OD1 ASP 16 A ASP 16 9_555 D MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc3 A OE2 GLU 42 A GLU 42 1_555 E K K . A K 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.29 ? metalc ? metalc4 A OE1 GLU 42 A GLU 42 1_555 E K K . A K 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 A OG1 THR 242 A THR 242 1_555 E K K . A K 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.674 ? metalc ? metalc6 A O GLY 243 A GLY 243 1_555 F K K . A K 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc7 A O GLY 243 A GLY 243 9_555 F K K . A K 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc8 A O SER 263 A SER 263 1_555 E K K . A K 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc9 A OD2 ASP 271 A ASP 271 1_555 C MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc10 A OD1 ASP 271 A ASP 271 1_555 C MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc11 B O4 PO4 . A PO4 384 1_555 C MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc12 B O2 PO4 . A PO4 384 1_555 D MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc13 G O2 POP . A POP 385 1_555 C MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc14 G O6 POP . A POP 385 1_555 C MG MG . A MG 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc15 G O3 POP . A POP 385 1_555 D MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc16 G O4 POP . A POP 385 1_555 D MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 262 n n P1 O2 POP sing 263 n n P1 O3 POP sing 264 n n P1 O POP sing 265 n n O2 HO2 POP sing 266 n n O P2 POP sing 267 n n P2 O4 POP doub 268 n n P2 O5 POP sing 269 n n P2 O6 POP sing 270 n n O5 HO5 POP sing 271 n n # _atom_sites.entry_id 1MXA _atom_sites.fract_transf_matrix[1][1] 0.007758 _atom_sites.fract_transf_matrix[1][2] 0.004479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 384 384 PO4 PO4 . C 3 MG A 1 411 411 MG MG . D 3 MG A 1 412 412 MG MG . E 4 K A 1 413 413 K K . F 4 K A 1 414 414 K K . G 5 POP A 1 385 385 POP POP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . G 5 -13.663 42.725 18.253 1 31.49 ? P1 POP 385 A 1 HETATM 2 O O1 POP . . . G 5 -12.466 43.52 18.548 1 28.1 ? O1 POP 385 A 1 HETATM 3 O O2 POP . . . G 5 -13.311 41.329 17.876 1 31.35 ? O2 POP 385 A 1 HETATM 4 O O3 POP . . . G 5 -14.68 42.842 19.331 1 34.47 ? O3 POP 385 A 1 HETATM 5 O O POP . . . G 5 -14.344 43.476 16.904 1 40.16 ? O POP 385 A 1 HETATM 6 P P2 POP . . . G 5 -15.796 42.806 16.389 1 38.5 ? P2 POP 385 A 1 HETATM 7 O O4 POP . . . G 5 -16.785 43.09 17.46 1 51.41 ? O4 POP 385 A 1 HETATM 8 O O5 POP . . . G 5 -16.158 43.443 15.128 1 43.88 ? O5 POP 385 A 1 HETATM 9 O O6 POP . . . G 5 -15.469 41.376 16.204 1 44.06 ? O6 POP 385 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #