data_1MXI # _model_server_result.job_id Dl-5MzP-ndNWvjOjnyX4AA _model_server_result.datetime_utc '2025-03-05 02:36:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 1MXI # _exptl.entry_id 1MXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1MXI _cell.length_a 40.8 _cell.length_b 40.8 _cell.length_c 165.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1MXI _atom_sites.fract_transf_matrix[1][1] 0.02451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02451 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 2001 2001 IOD I1 . C 3 SAH A 1 302 302 SAH SAH . D 4 HOH A 1 1001 1001 HOH WAT . D 4 HOH A 2 1002 1002 HOH WAT . D 4 HOH A 3 1003 1003 HOH WAT . D 4 HOH A 4 1004 1004 HOH WAT . D 4 HOH A 5 1005 1005 HOH WAT . D 4 HOH A 6 1006 1006 HOH WAT . D 4 HOH A 7 1007 1007 HOH WAT . D 4 HOH A 8 1008 1008 HOH WAT . D 4 HOH A 9 1009 1009 HOH WAT . D 4 HOH A 10 1010 1010 HOH WAT . D 4 HOH A 11 1011 1011 HOH WAT . D 4 HOH A 12 1012 1012 HOH WAT . D 4 HOH A 13 1013 1013 HOH WAT . D 4 HOH A 14 1014 1014 HOH WAT . D 4 HOH A 15 1015 1015 HOH WAT . D 4 HOH A 16 1016 1016 HOH WAT . D 4 HOH A 17 1017 1017 HOH WAT . D 4 HOH A 18 1018 1018 HOH WAT . D 4 HOH A 19 1019 1019 HOH WAT . D 4 HOH A 20 1020 1020 HOH WAT . D 4 HOH A 21 1021 1021 HOH WAT . D 4 HOH A 22 1022 1022 HOH WAT . D 4 HOH A 23 1023 1023 HOH WAT . D 4 HOH A 24 1024 1024 HOH WAT . D 4 HOH A 25 1025 1025 HOH WAT . D 4 HOH A 26 1026 1026 HOH WAT . D 4 HOH A 27 1027 1027 HOH WAT . D 4 HOH A 28 1028 1028 HOH WAT . D 4 HOH A 29 1029 1029 HOH WAT . D 4 HOH A 30 1030 1030 HOH WAT . D 4 HOH A 31 1031 1031 HOH WAT . D 4 HOH A 32 1032 1032 HOH WAT . D 4 HOH A 33 1033 1033 HOH WAT . D 4 HOH A 34 1034 1034 HOH WAT . D 4 HOH A 35 1035 1035 HOH WAT . D 4 HOH A 36 1036 1036 HOH WAT . D 4 HOH A 37 1037 1037 HOH WAT . D 4 HOH A 38 1038 1038 HOH WAT . D 4 HOH A 39 1039 1039 HOH WAT . D 4 HOH A 40 1040 1040 HOH WAT . D 4 HOH A 41 1041 1041 HOH WAT . D 4 HOH A 42 1042 1042 HOH WAT . D 4 HOH A 43 1043 1043 HOH WAT . D 4 HOH A 44 1044 1044 HOH WAT . D 4 HOH A 45 1045 1045 HOH WAT . D 4 HOH A 46 1046 1046 HOH WAT . D 4 HOH A 47 1047 1047 HOH WAT . D 4 HOH A 48 1048 1048 HOH WAT . D 4 HOH A 49 1049 1049 HOH WAT . D 4 HOH A 50 1050 1050 HOH WAT . D 4 HOH A 51 1051 1051 HOH WAT . D 4 HOH A 52 1052 1052 HOH WAT . D 4 HOH A 53 1053 1053 HOH WAT . D 4 HOH A 54 1054 1054 HOH WAT . D 4 HOH A 55 1055 1055 HOH WAT . D 4 HOH A 56 1056 1056 HOH WAT . D 4 HOH A 57 1057 1057 HOH WAT . D 4 HOH A 58 1058 1058 HOH WAT . D 4 HOH A 59 1059 1059 HOH WAT . D 4 HOH A 60 1060 1060 HOH WAT . D 4 HOH A 61 1061 1061 HOH WAT . D 4 HOH A 62 1062 1062 HOH WAT . D 4 HOH A 63 1063 1063 HOH WAT . D 4 HOH A 64 1064 1064 HOH WAT . D 4 HOH A 65 1065 1065 HOH WAT . D 4 HOH A 66 1066 1066 HOH WAT . D 4 HOH A 67 1067 1067 HOH WAT . D 4 HOH A 68 1068 1068 HOH WAT . D 4 HOH A 69 1069 1069 HOH WAT . D 4 HOH A 70 1070 1070 HOH WAT . D 4 HOH A 71 1071 1071 HOH WAT . D 4 HOH A 72 1072 1072 HOH WAT . D 4 HOH A 73 1073 1073 HOH WAT . D 4 HOH A 74 1074 1074 HOH WAT . D 4 HOH A 75 1075 1075 HOH WAT . D 4 HOH A 76 1076 1076 HOH WAT . D 4 HOH A 77 1077 1077 HOH WAT . D 4 HOH A 78 1078 1078 HOH WAT . D 4 HOH A 79 1079 1079 HOH WAT . D 4 HOH A 80 1080 1080 HOH WAT . D 4 HOH A 81 1081 1081 HOH WAT . D 4 HOH A 82 1082 1082 HOH WAT . D 4 HOH A 83 1083 1083 HOH WAT . D 4 HOH A 84 1084 1084 HOH WAT . D 4 HOH A 85 1085 1085 HOH WAT . D 4 HOH A 86 1086 1086 HOH WAT . D 4 HOH A 87 1087 1087 HOH WAT . D 4 HOH A 88 1088 1088 HOH WAT . D 4 HOH A 89 1089 1089 HOH WAT . D 4 HOH A 90 1090 1090 HOH WAT . D 4 HOH A 91 1091 1091 HOH WAT . D 4 HOH A 92 1092 1092 HOH WAT . D 4 HOH A 93 1093 1093 HOH WAT . D 4 HOH A 94 1094 1094 HOH WAT . D 4 HOH A 95 1095 1095 HOH WAT . D 4 HOH A 96 1096 1096 HOH WAT . D 4 HOH A 97 1097 1097 HOH WAT . D 4 HOH A 98 1098 1098 HOH WAT . D 4 HOH A 99 1099 1099 HOH WAT . D 4 HOH A 100 1100 1100 HOH WAT . D 4 HOH A 101 1101 1101 HOH WAT . D 4 HOH A 102 1102 1102 HOH WAT . D 4 HOH A 103 1103 1103 HOH WAT . D 4 HOH A 104 1104 1104 HOH WAT . D 4 HOH A 105 1105 1105 HOH WAT . D 4 HOH A 106 1106 1106 HOH WAT . D 4 HOH A 107 1107 1107 HOH WAT . D 4 HOH A 108 1108 1108 HOH WAT . D 4 HOH A 109 1109 1109 HOH WAT . D 4 HOH A 110 1110 1110 HOH WAT . D 4 HOH A 111 1111 1111 HOH WAT . D 4 HOH A 112 1112 1112 HOH WAT . D 4 HOH A 113 1113 1113 HOH WAT . D 4 HOH A 114 1114 1114 HOH WAT . D 4 HOH A 115 1115 1115 HOH WAT . D 4 HOH A 116 1116 1116 HOH WAT . D 4 HOH A 117 1117 1117 HOH WAT . D 4 HOH A 118 1118 1118 HOH WAT . D 4 HOH A 119 1119 1119 HOH WAT . D 4 HOH A 120 1120 1120 HOH WAT . D 4 HOH A 121 1121 1121 HOH WAT . D 4 HOH A 122 1122 1122 HOH WAT . D 4 HOH A 123 1123 1123 HOH WAT . D 4 HOH A 124 1124 1124 HOH WAT . D 4 HOH A 125 1125 1125 HOH WAT . D 4 HOH A 126 1126 1126 HOH WAT . D 4 HOH A 127 1127 1127 HOH WAT . D 4 HOH A 128 1128 1128 HOH WAT . D 4 HOH A 129 1129 1129 HOH WAT . D 4 HOH A 130 1130 1130 HOH WAT . D 4 HOH A 131 1131 1131 HOH WAT . D 4 HOH A 132 1132 1132 HOH WAT . D 4 HOH A 133 1133 1133 HOH WAT . D 4 HOH A 134 1134 1134 HOH WAT . D 4 HOH A 135 1135 1135 HOH WAT . D 4 HOH A 136 1136 1136 HOH WAT . D 4 HOH A 137 1137 1137 HOH WAT . D 4 HOH A 138 1138 1138 HOH WAT . D 4 HOH A 139 1139 1139 HOH WAT . D 4 HOH A 140 1140 1140 HOH WAT . D 4 HOH A 141 1141 1141 HOH WAT . D 4 HOH A 142 1142 1142 HOH WAT . D 4 HOH A 143 1143 1143 HOH WAT . D 4 HOH A 144 1144 1144 HOH WAT . D 4 HOH A 145 1145 1145 HOH WAT . D 4 HOH A 146 1146 1146 HOH WAT . D 4 HOH A 147 1147 1147 HOH WAT . D 4 HOH A 148 1148 1148 HOH WAT . D 4 HOH A 149 1149 1149 HOH WAT . D 4 HOH A 150 1150 1150 HOH WAT . D 4 HOH A 151 1151 1151 HOH WAT . D 4 HOH A 152 1152 1152 HOH WAT . D 4 HOH A 153 1153 1153 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 5.813 -16.674 -2.803 1 75.2 ? N SAH 302 A 1 HETATM 2 C CA SAH . . . C 3 5.325 -15.699 -3.789 1 68.96 ? CA SAH 302 A 1 HETATM 3 C CB SAH . . . C 3 5.441 -14.251 -3.256 1 58.62 ? CB SAH 302 A 1 HETATM 4 C CG SAH . . . C 3 4.745 -14.038 -1.888 1 42.96 ? CG SAH 302 A 1 HETATM 5 S SD SAH . . . C 3 3.116 -13.252 -1.774 1 23.1 ? SD SAH 302 A 1 HETATM 6 C C SAH . . . C 3 6.085 -15.837 -5.134 1 75.65 ? C SAH 302 A 1 HETATM 7 O O SAH . . . C 3 6.988 -16.718 -5.194 1 69.69 ? O SAH 302 A 1 HETATM 8 O OXT SAH . . . C 3 5.791 -15.073 -6.098 1 72.95 ? OXT SAH 302 A 1 HETATM 9 C C5' SAH . . . C 3 3 -13.318 0.047 1 15.48 ? C5' SAH 302 A 1 HETATM 10 C C4' SAH . . . C 3 2.077 -14.384 0.552 1 22.21 ? C4' SAH 302 A 1 HETATM 11 O O4' SAH . . . C 3 0.785 -14.05 0.052 1 18.12 ? O4' SAH 302 A 1 HETATM 12 C C3' SAH . . . C 3 2.365 -15.823 0.026 1 19.93 ? C3' SAH 302 A 1 HETATM 13 O O3' SAH . . . C 3 3.545 -16.371 0.743 1 19.87 ? O3' SAH 302 A 1 HETATM 14 C C2' SAH . . . C 3 1.041 -16.438 0.473 1 15.53 ? C2' SAH 302 A 1 HETATM 15 O O2' SAH . . . C 3 0.942 -16.755 1.874 1 15.16 ? O2' SAH 302 A 1 HETATM 16 C C1' SAH . . . C 3 0.087 -15.334 -0.028 1 15.47 ? C1' SAH 302 A 1 HETATM 17 N N9 SAH . . . C 3 -0.416 -15.456 -1.392 1 18.79 ? N9 SAH 302 A 1 HETATM 18 C C8 SAH . . . C 3 -0.268 -14.564 -2.491 1 17.36 ? C8 SAH 302 A 1 HETATM 19 N N7 SAH . . . C 3 -0.924 -15.043 -3.548 1 26.44 ? N7 SAH 302 A 1 HETATM 20 C C5 SAH . . . C 3 -1.513 -16.256 -3.149 1 19.46 ? C5 SAH 302 A 1 HETATM 21 C C6 SAH . . . C 3 -2.353 -17.261 -3.779 1 19.49 ? C6 SAH 302 A 1 HETATM 22 N N6 SAH . . . C 3 -2.783 -17.167 -5.057 1 19.12 ? N6 SAH 302 A 1 HETATM 23 N N1 SAH . . . C 3 -2.747 -18.368 -3.064 1 22.16 ? N1 SAH 302 A 1 HETATM 24 C C2 SAH . . . C 3 -2.343 -18.478 -1.814 1 21.85 ? C2 SAH 302 A 1 HETATM 25 N N3 SAH . . . C 3 -1.605 -17.651 -1.115 1 23 ? N3 SAH 302 A 1 HETATM 26 C C4 SAH . . . C 3 -1.198 -16.535 -1.828 1 23.46 ? C4 SAH 302 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #