data_1MYJ # _model_server_result.job_id vl8nB-yVBc7g4K9Y6_cCMQ _model_server_result.datetime_utc '2025-03-06 01:31:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1myj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":155}' # _entry.id 1MYJ # _exptl.entry_id 1MYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.05 _cell.angle_gamma 90 _cell.entry_id 1MYJ _cell.length_a 123.75 _cell.length_b 42.48 _cell.length_c 92.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 D FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 D FE HEM . A HEM 155 1_555 G O HOH . A HOH 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc3 B NE2 HIS 93 B HIS 93 1_555 F FE HEM . B HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 F FE HEM . B HEM 155 1_555 H O HOH . B HOH 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1MYJ _atom_sites.fract_transf_matrix[1][1] 0.008081 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 154 2 SO4 SO4 . D 3 HEM A 1 155 154 HEM HEM . E 2 SO4 B 1 154 1 SO4 SO4 . F 3 HEM B 1 155 154 HEM HEM . G 4 HOH A 1 156 14 HOH HOH . G 4 HOH A 2 157 15 HOH HOH . G 4 HOH A 3 158 16 HOH HOH . G 4 HOH A 4 159 17 HOH HOH . G 4 HOH A 5 160 18 HOH HOH . G 4 HOH A 6 161 19 HOH HOH . G 4 HOH A 7 162 20 HOH HOH . G 4 HOH A 8 163 21 HOH HOH . G 4 HOH A 9 164 22 HOH HOH . G 4 HOH A 10 165 23 HOH HOH . G 4 HOH A 11 166 24 HOH HOH . G 4 HOH A 12 167 25 HOH HOH . G 4 HOH A 13 168 26 HOH HOH . G 4 HOH A 14 169 27 HOH HOH . G 4 HOH A 15 170 28 HOH HOH . G 4 HOH A 16 171 29 HOH HOH . G 4 HOH A 17 172 30 HOH HOH . G 4 HOH A 18 173 31 HOH HOH . G 4 HOH A 19 174 32 HOH HOH . G 4 HOH A 20 175 33 HOH HOH . G 4 HOH A 21 176 34 HOH HOH . G 4 HOH A 22 177 44 HOH HOH . G 4 HOH A 23 178 45 HOH HOH . G 4 HOH A 24 179 46 HOH HOH . G 4 HOH A 25 180 47 HOH HOH . G 4 HOH A 26 181 48 HOH HOH . G 4 HOH A 27 182 49 HOH HOH . G 4 HOH A 28 183 50 HOH HOH . G 4 HOH A 29 184 51 HOH HOH . G 4 HOH A 30 185 52 HOH HOH . G 4 HOH A 31 186 53 HOH HOH . G 4 HOH A 32 187 54 HOH HOH . G 4 HOH A 33 188 55 HOH HOH . G 4 HOH A 34 189 56 HOH HOH . G 4 HOH A 35 190 57 HOH HOH . G 4 HOH A 36 191 58 HOH HOH . G 4 HOH A 37 192 59 HOH HOH . G 4 HOH A 38 193 60 HOH HOH . G 4 HOH A 39 194 61 HOH HOH . G 4 HOH A 40 195 62 HOH HOH . G 4 HOH A 41 196 78 HOH HOH . G 4 HOH A 42 197 79 HOH HOH . G 4 HOH A 43 198 80 HOH HOH . G 4 HOH A 44 199 81 HOH HOH . G 4 HOH A 45 200 82 HOH HOH . G 4 HOH A 46 201 83 HOH HOH . G 4 HOH A 47 202 84 HOH HOH . G 4 HOH A 48 203 85 HOH HOH . G 4 HOH A 49 204 93 HOH HOH . G 4 HOH A 50 205 94 HOH HOH . G 4 HOH A 51 206 95 HOH HOH . G 4 HOH A 52 207 96 HOH HOH . G 4 HOH A 53 208 97 HOH HOH . H 4 HOH B 1 156 1 HOH HOH . H 4 HOH B 2 157 2 HOH HOH . H 4 HOH B 3 158 3 HOH HOH . H 4 HOH B 4 159 4 HOH HOH . H 4 HOH B 5 160 5 HOH HOH . H 4 HOH B 6 161 6 HOH HOH . H 4 HOH B 7 162 7 HOH HOH . H 4 HOH B 8 163 8 HOH HOH . H 4 HOH B 9 164 9 HOH HOH . H 4 HOH B 10 165 10 HOH HOH . H 4 HOH B 11 166 11 HOH HOH . H 4 HOH B 12 167 12 HOH HOH . H 4 HOH B 13 168 13 HOH HOH . H 4 HOH B 14 169 35 HOH HOH . H 4 HOH B 15 170 36 HOH HOH . H 4 HOH B 16 171 37 HOH HOH . H 4 HOH B 17 172 38 HOH HOH . H 4 HOH B 18 173 39 HOH HOH . H 4 HOH B 19 174 40 HOH HOH . H 4 HOH B 20 175 41 HOH HOH . H 4 HOH B 21 176 42 HOH HOH . H 4 HOH B 22 177 43 HOH HOH . H 4 HOH B 23 178 63 HOH HOH . H 4 HOH B 24 179 64 HOH HOH . H 4 HOH B 25 180 65 HOH HOH . H 4 HOH B 26 181 66 HOH HOH . H 4 HOH B 27 182 67 HOH HOH . H 4 HOH B 28 183 68 HOH HOH . H 4 HOH B 29 184 69 HOH HOH . H 4 HOH B 30 185 70 HOH HOH . H 4 HOH B 31 186 71 HOH HOH . H 4 HOH B 32 187 72 HOH HOH . H 4 HOH B 33 188 73 HOH HOH . H 4 HOH B 34 189 74 HOH HOH . H 4 HOH B 35 190 75 HOH HOH . H 4 HOH B 36 191 76 HOH HOH . H 4 HOH B 37 192 77 HOH HOH . H 4 HOH B 38 193 86 HOH HOH . H 4 HOH B 39 194 87 HOH HOH . H 4 HOH B 40 195 88 HOH HOH . H 4 HOH B 41 196 89 HOH HOH . H 4 HOH B 42 197 90 HOH HOH . H 4 HOH B 43 198 91 HOH HOH . H 4 HOH B 44 199 92 HOH HOH . H 4 HOH B 45 200 98 HOH HOH . H 4 HOH B 46 201 99 HOH HOH . H 4 HOH B 47 202 100 HOH HOH . H 4 HOH B 48 203 101 HOH HOH . H 4 HOH B 49 204 102 HOH HOH . H 4 HOH B 50 205 103 HOH HOH . H 4 HOH B 51 206 104 HOH HOH . H 4 HOH B 52 207 105 HOH HOH . H 4 HOH B 53 208 106 HOH HOH . H 4 HOH B 54 209 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 42.373 -19.587 52.599 1 16.9 ? CHA HEM 155 A 1 HETATM 2 C CHB HEM . . . D 3 45.123 -19.149 48.538 1 14.31 ? CHB HEM 155 A 1 HETATM 3 C CHC HEM . . . D 3 45.043 -14.293 49.097 1 14.59 ? CHC HEM 155 A 1 HETATM 4 C CHD HEM . . . D 3 42.491 -14.789 53.212 1 16.83 ? CHD HEM 155 A 1 HETATM 5 C C1A HEM . . . D 3 43.105 -19.857 51.407 1 16.52 ? C1A HEM 155 A 1 HETATM 6 C C2A HEM . . . D 3 43.342 -21.165 50.859 1 16.41 ? C2A HEM 155 A 1 HETATM 7 C C3A HEM . . . D 3 44.056 -21.028 49.757 1 15.56 ? C3A HEM 155 A 1 HETATM 8 C C4A HEM . . . D 3 44.318 -19.64 49.588 1 15.42 ? C4A HEM 155 A 1 HETATM 9 C CMA HEM . . . D 3 44.552 -22.088 48.801 1 15.04 ? CMA HEM 155 A 1 HETATM 10 C CAA HEM . . . D 3 42.748 -22.435 51.487 1 19.08 ? CAA HEM 155 A 1 HETATM 11 C CBA HEM . . . D 3 41.462 -22.823 50.619 1 23.14 ? CBA HEM 155 A 1 HETATM 12 C CGA HEM . . . D 3 40.3 -21.823 50.592 1 24.37 ? CGA HEM 155 A 1 HETATM 13 O O1A HEM . . . D 3 39.801 -21.666 51.747 1 26.66 ? O1A HEM 155 A 1 HETATM 14 O O2A HEM . . . D 3 40.092 -21.238 49.511 1 24.2 ? O2A HEM 155 A 1 HETATM 15 C C1B HEM . . . D 3 45.29 -17.785 48.309 1 14.03 ? C1B HEM 155 A 1 HETATM 16 C C2B HEM . . . D 3 45.932 -17.2 47.133 1 13.33 ? C2B HEM 155 A 1 HETATM 17 C C3B HEM . . . D 3 45.926 -15.887 47.299 1 13.35 ? C3B HEM 155 A 1 HETATM 18 C C4B HEM . . . D 3 45.28 -15.564 48.574 1 13.79 ? C4B HEM 155 A 1 HETATM 19 C CMB HEM . . . D 3 46.534 -18.123 46.081 1 12.75 ? CMB HEM 155 A 1 HETATM 20 C CAB HEM . . . D 3 46.483 -14.75 46.443 1 14.86 ? CAB HEM 155 A 1 HETATM 21 C CBB HEM . . . D 3 47.804 -14.765 46.092 1 14.91 ? CBB HEM 155 A 1 HETATM 22 C C1C HEM . . . D 3 44.362 -13.99 50.307 1 15.66 ? C1C HEM 155 A 1 HETATM 23 C C2C HEM . . . D 3 44.258 -12.713 50.915 1 16.37 ? C2C HEM 155 A 1 HETATM 24 C C3C HEM . . . D 3 43.618 -12.89 52.082 1 16.84 ? C3C HEM 155 A 1 HETATM 25 C C4C HEM . . . D 3 43.272 -14.25 52.194 1 16.36 ? C4C HEM 155 A 1 HETATM 26 C CMC HEM . . . D 3 44.816 -11.408 50.34 1 14.6 ? CMC HEM 155 A 1 HETATM 27 C CAC HEM . . . D 3 43.184 -11.891 53.168 1 18.23 ? CAC HEM 155 A 1 HETATM 28 C CBC HEM . . . D 3 43.62 -10.644 53.309 1 19.01 ? CBC HEM 155 A 1 HETATM 29 C C1D HEM . . . D 3 42.241 -16.113 53.413 1 17.42 ? C1D HEM 155 A 1 HETATM 30 C C2D HEM . . . D 3 41.499 -16.687 54.542 1 18.73 ? C2D HEM 155 A 1 HETATM 31 C C3D HEM . . . D 3 41.462 -17.973 54.341 1 19.73 ? C3D HEM 155 A 1 HETATM 32 C C4D HEM . . . D 3 42.19 -18.33 53.138 1 18.02 ? C4D HEM 155 A 1 HETATM 33 C CMD HEM . . . D 3 40.896 -15.776 55.636 1 18.27 ? CMD HEM 155 A 1 HETATM 34 C CAD HEM . . . D 3 40.913 -19.073 55.232 1 24.51 ? CAD HEM 155 A 1 HETATM 35 C CBD HEM . . . D 3 42.181 -19.367 56.064 1 31.6 ? CBD HEM 155 A 1 HETATM 36 C CGD HEM . . . D 3 41.902 -20.478 57.037 1 36.79 ? CGD HEM 155 A 1 HETATM 37 O O1D HEM . . . D 3 41.815 -20.05 58.255 1 40.19 ? O1D HEM 155 A 1 HETATM 38 O O2D HEM . . . D 3 41.711 -21.656 56.585 1 39.85 ? O2D HEM 155 A 1 HETATM 39 N NA HEM . . . D 3 43.686 -18.882 50.617 1 13.53 ? NA HEM 155 A 1 HETATM 40 N NB HEM . . . D 3 44.891 -16.74 49.136 1 13.59 ? NB HEM 155 A 1 HETATM 41 N NC HEM . . . D 3 43.747 -14.989 51.097 1 14.85 ? NC HEM 155 A 1 HETATM 42 N ND HEM . . . D 3 42.62 -17.155 52.57 1 15.6 ? ND HEM 155 A 1 HETATM 43 FE FE HEM . . . D 3 43.677 -16.967 50.848 1 14.06 ? FE HEM 155 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #