data_1MZ4 # _model_server_result.job_id mAxNMfFah_3EB1iUsiUDjg _model_server_result.datetime_utc '2024-11-23 01:48:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":143}' # _entry.id 1MZ4 # _exptl.entry_id 1MZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MZ4 _cell.length_a 69.641 _cell.length_b 69.641 _cell.length_c 92.849 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 37 A CYS 37 1_555 H CAB HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale2 A SG CYS 40 A CYS 40 1_555 H CAC HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 H FE HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A NE2 HIS 92 A HIS 92 1_555 H FE HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 133 n n C1 C2 GOL sing 134 n n C1 H11 GOL sing 135 n n C1 H12 GOL sing 136 n n O1 HO1 GOL sing 137 n n C2 O2 GOL sing 138 n n C2 C3 GOL sing 139 n n C2 H2 GOL sing 140 n n O2 HO2 GOL sing 141 n n C3 O3 GOL sing 142 n n C3 H31 GOL sing 143 n n C3 H32 GOL sing 144 n n O3 HO3 GOL sing 145 n n # _atom_sites.entry_id 1MZ4 _atom_sites.fract_transf_matrix[1][1] 0.014359 _atom_sites.fract_transf_matrix[1][2] 0.00829 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 145 145 PO4 PO4 . C 2 PO4 A 1 146 146 PO4 PO4 . D 2 PO4 A 1 147 147 PO4 PO4 . E 2 PO4 A 1 148 148 PO4 PO4 . F 2 PO4 A 1 149 149 PO4 PO4 . G 3 BCT A 1 150 150 BCT BCT . H 4 HEC A 1 151 135 HEC HEM . I 5 GOL A 1 140 140 GOL GOL . J 5 GOL A 1 141 141 GOL GOL . K 5 GOL A 1 142 142 GOL GOL . L 5 GOL A 1 143 143 GOL GOL . M 5 GOL A 1 144 144 GOL GOL . N 6 HOH A 1 152 1 HOH HOH . N 6 HOH A 2 153 2 HOH HOH . N 6 HOH A 3 154 3 HOH HOH . N 6 HOH A 4 155 4 HOH HOH . N 6 HOH A 5 156 5 HOH HOH . N 6 HOH A 6 157 6 HOH HOH . N 6 HOH A 7 158 7 HOH HOH . N 6 HOH A 8 159 8 HOH HOH . N 6 HOH A 9 160 9 HOH HOH . N 6 HOH A 10 161 10 HOH HOH . N 6 HOH A 11 162 11 HOH HOH . N 6 HOH A 12 163 12 HOH HOH . N 6 HOH A 13 164 13 HOH HOH . N 6 HOH A 14 165 14 HOH HOH . N 6 HOH A 15 166 15 HOH HOH . N 6 HOH A 16 167 16 HOH HOH . N 6 HOH A 17 168 17 HOH HOH . N 6 HOH A 18 169 18 HOH HOH . N 6 HOH A 19 170 19 HOH HOH . N 6 HOH A 20 171 20 HOH HOH . N 6 HOH A 21 172 21 HOH HOH . N 6 HOH A 22 173 22 HOH HOH . N 6 HOH A 23 174 23 HOH HOH . N 6 HOH A 24 175 24 HOH HOH . N 6 HOH A 25 176 25 HOH HOH . N 6 HOH A 26 177 26 HOH HOH . N 6 HOH A 27 178 27 HOH HOH . N 6 HOH A 28 179 28 HOH HOH . N 6 HOH A 29 180 29 HOH HOH . N 6 HOH A 30 181 30 HOH HOH . N 6 HOH A 31 182 31 HOH HOH . N 6 HOH A 32 183 32 HOH HOH . N 6 HOH A 33 184 33 HOH HOH . N 6 HOH A 34 185 34 HOH HOH . N 6 HOH A 35 186 35 HOH HOH . N 6 HOH A 36 187 36 HOH HOH . N 6 HOH A 37 188 37 HOH HOH . N 6 HOH A 38 189 38 HOH HOH . N 6 HOH A 39 190 39 HOH HOH . N 6 HOH A 40 191 40 HOH HOH . N 6 HOH A 41 192 41 HOH HOH . N 6 HOH A 42 193 42 HOH HOH . N 6 HOH A 43 194 43 HOH HOH . N 6 HOH A 44 195 44 HOH HOH . N 6 HOH A 45 196 45 HOH HOH . N 6 HOH A 46 197 46 HOH HOH . N 6 HOH A 47 198 47 HOH HOH . N 6 HOH A 48 199 48 HOH HOH . N 6 HOH A 49 200 49 HOH HOH . N 6 HOH A 50 201 50 HOH HOH . N 6 HOH A 51 202 51 HOH HOH . N 6 HOH A 52 203 52 HOH HOH . N 6 HOH A 53 204 53 HOH HOH . N 6 HOH A 54 205 54 HOH HOH . N 6 HOH A 55 206 55 HOH HOH . N 6 HOH A 56 207 56 HOH HOH . N 6 HOH A 57 208 57 HOH HOH . N 6 HOH A 58 209 58 HOH HOH . N 6 HOH A 59 210 59 HOH HOH . N 6 HOH A 60 211 60 HOH HOH . N 6 HOH A 61 212 61 HOH HOH . N 6 HOH A 62 213 62 HOH HOH . N 6 HOH A 63 214 63 HOH HOH . N 6 HOH A 64 215 64 HOH HOH . N 6 HOH A 65 216 65 HOH HOH . N 6 HOH A 66 217 66 HOH HOH . N 6 HOH A 67 218 67 HOH HOH . N 6 HOH A 68 219 68 HOH HOH . N 6 HOH A 69 220 69 HOH HOH . N 6 HOH A 70 221 70 HOH HOH . N 6 HOH A 71 222 71 HOH HOH . N 6 HOH A 72 223 72 HOH HOH . N 6 HOH A 73 224 73 HOH HOH . N 6 HOH A 74 225 74 HOH HOH . N 6 HOH A 75 226 75 HOH HOH . N 6 HOH A 76 227 76 HOH HOH . N 6 HOH A 77 228 77 HOH HOH . N 6 HOH A 78 229 78 HOH HOH . N 6 HOH A 79 230 79 HOH HOH . N 6 HOH A 80 231 80 HOH HOH . N 6 HOH A 81 232 81 HOH HOH . N 6 HOH A 82 233 82 HOH HOH . N 6 HOH A 83 234 83 HOH HOH . N 6 HOH A 84 235 84 HOH HOH . N 6 HOH A 85 236 85 HOH HOH . N 6 HOH A 86 237 86 HOH HOH . N 6 HOH A 87 238 87 HOH HOH . N 6 HOH A 88 239 88 HOH HOH . N 6 HOH A 89 240 89 HOH HOH . N 6 HOH A 90 241 90 HOH HOH . N 6 HOH A 91 242 91 HOH HOH . N 6 HOH A 92 243 92 HOH HOH . N 6 HOH A 93 244 93 HOH HOH . N 6 HOH A 94 245 94 HOH HOH . N 6 HOH A 95 246 95 HOH HOH . N 6 HOH A 96 247 96 HOH HOH . N 6 HOH A 97 248 97 HOH HOH . N 6 HOH A 98 249 98 HOH HOH . N 6 HOH A 99 250 99 HOH HOH . N 6 HOH A 100 251 100 HOH HOH . N 6 HOH A 101 252 101 HOH HOH . N 6 HOH A 102 253 102 HOH HOH . N 6 HOH A 103 254 103 HOH HOH . N 6 HOH A 104 255 104 HOH HOH . N 6 HOH A 105 256 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 40.6 23.781 12.926 1 46.03 ? C1 GOL 143 A 1 HETATM 2 O O1 GOL . . . L 5 39.707 23.155 13.875 1 55.87 ? O1 GOL 143 A 1 HETATM 3 C C2 GOL . . . L 5 41.936 24.081 13.624 1 50.44 ? C2 GOL 143 A 1 HETATM 4 O O2 GOL . . . L 5 41.782 25.287 14.4 1 57.06 ? O2 GOL 143 A 1 HETATM 5 C C3 GOL . . . L 5 43.039 24.249 12.572 1 51.44 ? C3 GOL 143 A 1 HETATM 6 O O3 GOL . . . L 5 44.051 23.226 12.703 1 68.87 ? O3 GOL 143 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #