data_1MZ4 # _model_server_result.job_id xHPsMTta8CxFyVgMeci5-A _model_server_result.datetime_utc '2024-11-26 17:01:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":151}' # _entry.id 1MZ4 # _exptl.entry_id 1MZ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MZ4 _cell.length_a 69.641 _cell.length_b 69.641 _cell.length_c 92.849 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 37 A CYS 37 1_555 H CAB HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale2 A SG CYS 40 A CYS 40 1_555 H CAC HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 H FE HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A NE2 HIS 92 A HIS 92 1_555 H FE HEC . A HEC 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 146 n n FE NB HEC sing 147 n n FE NC HEC sing 148 n n FE ND HEC sing 149 n n CHA C1A HEC doub 150 n n CHA C4D HEC sing 151 n n CHA HHA HEC sing 152 n n CHB C4A HEC doub 153 n n CHB C1B HEC sing 154 n n CHB HHB HEC sing 155 n n CHC C4B HEC doub 156 n n CHC C1C HEC sing 157 n n CHC HHC HEC sing 158 n n CHD C4C HEC doub 159 n n CHD C1D HEC sing 160 n n CHD HHD HEC sing 161 n n NA C1A HEC sing 162 n y NA C4A HEC sing 163 n y C1A C2A HEC sing 164 n y C2A C3A HEC doub 165 n y C2A CAA HEC sing 166 n n C3A C4A HEC sing 167 n y C3A CMA HEC sing 168 n n CMA HMA1 HEC sing 169 n n CMA HMA2 HEC sing 170 n n CMA HMA3 HEC sing 171 n n CAA CBA HEC sing 172 n n CAA HAA1 HEC sing 173 n n CAA HAA2 HEC sing 174 n n CBA CGA HEC sing 175 n n CBA HBA1 HEC sing 176 n n CBA HBA2 HEC sing 177 n n CGA O1A HEC doub 178 n n CGA O2A HEC sing 179 n n O2A H2A HEC sing 180 n n NB C1B HEC sing 181 n y NB C4B HEC sing 182 n y C1B C2B HEC doub 183 n y C2B C3B HEC sing 184 n y C2B CMB HEC sing 185 n n C3B C4B HEC sing 186 n y C3B CAB HEC doub 187 e n CMB HMB1 HEC sing 188 n n CMB HMB2 HEC sing 189 n n CMB HMB3 HEC sing 190 n n CAB CBB HEC sing 191 n n CAB HAB HEC sing 192 n n CBB HBB1 HEC sing 193 n n CBB HBB2 HEC sing 194 n n CBB HBB3 HEC sing 195 n n NC C1C HEC sing 196 n y NC C4C HEC sing 197 n y C1C C2C HEC doub 198 n y C2C C3C HEC sing 199 n y C2C CMC HEC sing 200 n n C3C C4C HEC sing 201 n y C3C CAC HEC doub 202 e n CMC HMC1 HEC sing 203 n n CMC HMC2 HEC sing 204 n n CMC HMC3 HEC sing 205 n n CAC CBC HEC sing 206 n n CAC HAC HEC sing 207 n n CBC HBC1 HEC sing 208 n n CBC HBC2 HEC sing 209 n n CBC HBC3 HEC sing 210 n n ND C1D HEC sing 211 n y ND C4D HEC sing 212 n y C1D C2D HEC doub 213 n y C2D C3D HEC sing 214 n y C2D CMD HEC sing 215 n n C3D C4D HEC doub 216 n y C3D CAD HEC sing 217 n n CMD HMD1 HEC sing 218 n n CMD HMD2 HEC sing 219 n n CMD HMD3 HEC sing 220 n n CAD CBD HEC sing 221 n n CAD HAD1 HEC sing 222 n n CAD HAD2 HEC sing 223 n n CBD CGD HEC sing 224 n n CBD HBD1 HEC sing 225 n n CBD HBD2 HEC sing 226 n n CGD O1D HEC doub 227 n n CGD O2D HEC sing 228 n n O2D H2D HEC sing 229 n n # _atom_sites.entry_id 1MZ4 _atom_sites.fract_transf_matrix[1][1] 0.014359 _atom_sites.fract_transf_matrix[1][2] 0.00829 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 145 145 PO4 PO4 . C 2 PO4 A 1 146 146 PO4 PO4 . D 2 PO4 A 1 147 147 PO4 PO4 . E 2 PO4 A 1 148 148 PO4 PO4 . F 2 PO4 A 1 149 149 PO4 PO4 . G 3 BCT A 1 150 150 BCT BCT . H 4 HEC A 1 151 135 HEC HEM . I 5 GOL A 1 140 140 GOL GOL . J 5 GOL A 1 141 141 GOL GOL . K 5 GOL A 1 142 142 GOL GOL . L 5 GOL A 1 143 143 GOL GOL . M 5 GOL A 1 144 144 GOL GOL . N 6 HOH A 1 152 1 HOH HOH . N 6 HOH A 2 153 2 HOH HOH . N 6 HOH A 3 154 3 HOH HOH . N 6 HOH A 4 155 4 HOH HOH . N 6 HOH A 5 156 5 HOH HOH . N 6 HOH A 6 157 6 HOH HOH . N 6 HOH A 7 158 7 HOH HOH . N 6 HOH A 8 159 8 HOH HOH . N 6 HOH A 9 160 9 HOH HOH . N 6 HOH A 10 161 10 HOH HOH . N 6 HOH A 11 162 11 HOH HOH . N 6 HOH A 12 163 12 HOH HOH . N 6 HOH A 13 164 13 HOH HOH . N 6 HOH A 14 165 14 HOH HOH . N 6 HOH A 15 166 15 HOH HOH . N 6 HOH A 16 167 16 HOH HOH . N 6 HOH A 17 168 17 HOH HOH . N 6 HOH A 18 169 18 HOH HOH . N 6 HOH A 19 170 19 HOH HOH . N 6 HOH A 20 171 20 HOH HOH . N 6 HOH A 21 172 21 HOH HOH . N 6 HOH A 22 173 22 HOH HOH . N 6 HOH A 23 174 23 HOH HOH . N 6 HOH A 24 175 24 HOH HOH . N 6 HOH A 25 176 25 HOH HOH . N 6 HOH A 26 177 26 HOH HOH . N 6 HOH A 27 178 27 HOH HOH . N 6 HOH A 28 179 28 HOH HOH . N 6 HOH A 29 180 29 HOH HOH . N 6 HOH A 30 181 30 HOH HOH . N 6 HOH A 31 182 31 HOH HOH . N 6 HOH A 32 183 32 HOH HOH . N 6 HOH A 33 184 33 HOH HOH . N 6 HOH A 34 185 34 HOH HOH . N 6 HOH A 35 186 35 HOH HOH . N 6 HOH A 36 187 36 HOH HOH . N 6 HOH A 37 188 37 HOH HOH . N 6 HOH A 38 189 38 HOH HOH . N 6 HOH A 39 190 39 HOH HOH . N 6 HOH A 40 191 40 HOH HOH . N 6 HOH A 41 192 41 HOH HOH . N 6 HOH A 42 193 42 HOH HOH . N 6 HOH A 43 194 43 HOH HOH . N 6 HOH A 44 195 44 HOH HOH . N 6 HOH A 45 196 45 HOH HOH . N 6 HOH A 46 197 46 HOH HOH . N 6 HOH A 47 198 47 HOH HOH . N 6 HOH A 48 199 48 HOH HOH . N 6 HOH A 49 200 49 HOH HOH . N 6 HOH A 50 201 50 HOH HOH . N 6 HOH A 51 202 51 HOH HOH . N 6 HOH A 52 203 52 HOH HOH . N 6 HOH A 53 204 53 HOH HOH . N 6 HOH A 54 205 54 HOH HOH . N 6 HOH A 55 206 55 HOH HOH . N 6 HOH A 56 207 56 HOH HOH . N 6 HOH A 57 208 57 HOH HOH . N 6 HOH A 58 209 58 HOH HOH . N 6 HOH A 59 210 59 HOH HOH . N 6 HOH A 60 211 60 HOH HOH . N 6 HOH A 61 212 61 HOH HOH . N 6 HOH A 62 213 62 HOH HOH . N 6 HOH A 63 214 63 HOH HOH . N 6 HOH A 64 215 64 HOH HOH . N 6 HOH A 65 216 65 HOH HOH . N 6 HOH A 66 217 66 HOH HOH . N 6 HOH A 67 218 67 HOH HOH . N 6 HOH A 68 219 68 HOH HOH . N 6 HOH A 69 220 69 HOH HOH . N 6 HOH A 70 221 70 HOH HOH . N 6 HOH A 71 222 71 HOH HOH . N 6 HOH A 72 223 72 HOH HOH . N 6 HOH A 73 224 73 HOH HOH . N 6 HOH A 74 225 74 HOH HOH . N 6 HOH A 75 226 75 HOH HOH . N 6 HOH A 76 227 76 HOH HOH . N 6 HOH A 77 228 77 HOH HOH . N 6 HOH A 78 229 78 HOH HOH . N 6 HOH A 79 230 79 HOH HOH . N 6 HOH A 80 231 80 HOH HOH . N 6 HOH A 81 232 81 HOH HOH . N 6 HOH A 82 233 82 HOH HOH . N 6 HOH A 83 234 83 HOH HOH . N 6 HOH A 84 235 84 HOH HOH . N 6 HOH A 85 236 85 HOH HOH . N 6 HOH A 86 237 86 HOH HOH . N 6 HOH A 87 238 87 HOH HOH . N 6 HOH A 88 239 88 HOH HOH . N 6 HOH A 89 240 89 HOH HOH . N 6 HOH A 90 241 90 HOH HOH . N 6 HOH A 91 242 91 HOH HOH . N 6 HOH A 92 243 92 HOH HOH . N 6 HOH A 93 244 93 HOH HOH . N 6 HOH A 94 245 94 HOH HOH . N 6 HOH A 95 246 95 HOH HOH . N 6 HOH A 96 247 96 HOH HOH . N 6 HOH A 97 248 97 HOH HOH . N 6 HOH A 98 249 98 HOH HOH . N 6 HOH A 99 250 99 HOH HOH . N 6 HOH A 100 251 100 HOH HOH . N 6 HOH A 101 252 101 HOH HOH . N 6 HOH A 102 253 102 HOH HOH . N 6 HOH A 103 254 103 HOH HOH . N 6 HOH A 104 255 104 HOH HOH . N 6 HOH A 105 256 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . H 4 38.798 20.395 -3.32 1 14.57 ? FE HEC 151 A 1 HETATM 2 C CHA HEC . . . H 4 38.473 18.78 -6.344 1 13.5 ? CHA HEC 151 A 1 HETATM 3 C CHB HEC . . . H 4 39.718 17.439 -1.83 1 9.96 ? CHB HEC 151 A 1 HETATM 4 C CHC HEC . . . H 4 39.257 22.046 -0.304 1 12.17 ? CHC HEC 151 A 1 HETATM 5 C CHD HEC . . . H 4 37.688 23.29 -4.743 1 15.73 ? CHD HEC 151 A 1 HETATM 6 N NA HEC . . . H 4 39.015 18.525 -3.951 1 14.11 ? NA HEC 151 A 1 HETATM 7 C C1A HEC . . . H 4 38.839 18.027 -5.235 1 14.15 ? C1A HEC 151 A 1 HETATM 8 C C2A HEC . . . H 4 39.139 16.609 -5.288 1 14.18 ? C2A HEC 151 A 1 HETATM 9 C C3A HEC . . . H 4 39.515 16.245 -4.037 1 14.29 ? C3A HEC 151 A 1 HETATM 10 C C4A HEC . . . H 4 39.41 17.419 -3.201 1 11.61 ? C4A HEC 151 A 1 HETATM 11 C CMA HEC . . . H 4 40.01 14.863 -3.611 1 14.56 ? CMA HEC 151 A 1 HETATM 12 C CAA HEC . . . H 4 39.06 15.673 -6.508 1 17.85 ? CAA HEC 151 A 1 HETATM 13 C CBA HEC . . . H 4 37.628 15.162 -6.665 1 14.92 ? CBA HEC 151 A 1 HETATM 14 C CGA HEC . . . H 4 37.498 14.067 -7.712 1 22.73 ? CGA HEC 151 A 1 HETATM 15 O O1A HEC . . . H 4 36.372 13.558 -7.906 1 19.73 ? O1A HEC 151 A 1 HETATM 16 O O2A HEC . . . H 4 38.516 13.713 -8.339 1 15.97 ? O2A HEC 151 A 1 HETATM 17 N NB HEC . . . H 4 39.374 19.871 -1.487 1 13.18 ? NB HEC 151 A 1 HETATM 18 C C1B HEC . . . H 4 39.691 18.591 -1.034 1 13.85 ? C1B HEC 151 A 1 HETATM 19 C C2B HEC . . . H 4 40.054 18.613 0.365 1 13.06 ? C2B HEC 151 A 1 HETATM 20 C C3B HEC . . . H 4 39.996 19.908 0.806 1 12.9 ? C3B HEC 151 A 1 HETATM 21 C C4B HEC . . . H 4 39.547 20.685 -0.351 1 12.27 ? C4B HEC 151 A 1 HETATM 22 C CMB HEC . . . H 4 40.376 17.384 1.21 1 12.8 ? CMB HEC 151 A 1 HETATM 23 C CAB HEC . . . H 4 40.277 20.374 2.11 1 12.01 ? CAB HEC 151 A 1 HETATM 24 C CBB HEC . . . H 4 41.546 20.234 2.689 1 15.26 ? CBB HEC 151 A 1 HETATM 25 N NC HEC . . . H 4 38.564 22.25 -2.671 1 12.45 ? NC HEC 151 A 1 HETATM 26 C C1C HEC . . . H 4 38.795 22.778 -1.397 1 15.03 ? C1C HEC 151 A 1 HETATM 27 C C2C HEC . . . H 4 38.39 24.169 -1.322 1 14.96 ? C2C HEC 151 A 1 HETATM 28 C C3C HEC . . . H 4 37.938 24.521 -2.555 1 11.71 ? C3C HEC 151 A 1 HETATM 29 C C4C HEC . . . H 4 38.055 23.328 -3.395 1 15.18 ? C4C HEC 151 A 1 HETATM 30 C CMC HEC . . . H 4 38.363 25.041 -0.06 1 15.1 ? CMC HEC 151 A 1 HETATM 31 C CAC HEC . . . H 4 37.335 25.737 -2.921 1 20.01 ? CAC HEC 151 A 1 HETATM 32 C CBC HEC . . . H 4 38.031 26.934 -2.884 1 19.75 ? CBC HEC 151 A 1 HETATM 33 N ND HEC . . . H 4 38.198 20.914 -5.138 1 15.01 ? ND HEC 151 A 1 HETATM 34 C C1D HEC . . . H 4 37.781 22.172 -5.563 1 19.12 ? C1D HEC 151 A 1 HETATM 35 C C2D HEC . . . H 4 37.552 22.19 -6.995 1 16.74 ? C2D HEC 151 A 1 HETATM 36 C C3D HEC . . . H 4 37.813 20.936 -7.452 1 13.21 ? C3D HEC 151 A 1 HETATM 37 C C4D HEC . . . H 4 38.174 20.136 -6.3 1 12.87 ? C4D HEC 151 A 1 HETATM 38 C CMD HEC . . . H 4 37.068 23.376 -7.826 1 18.02 ? CMD HEC 151 A 1 HETATM 39 C CAD HEC . . . H 4 37.876 20.474 -8.902 1 14.08 ? CAD HEC 151 A 1 HETATM 40 C CBD HEC . . . H 4 39.249 20.81 -9.47 1 14.69 ? CBD HEC 151 A 1 HETATM 41 C CGD HEC . . . H 4 39.433 20.315 -10.889 1 19.07 ? CGD HEC 151 A 1 HETATM 42 O O1D HEC . . . H 4 39.933 19.183 -11.085 1 18.43 ? O1D HEC 151 A 1 HETATM 43 O O2D HEC . . . H 4 39.064 21.065 -11.811 1 20.37 ? O2D HEC 151 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #