data_1MZ6
#
_model_server_result.job_id            '_cKAMe5grvxiEtYVz_irsQ' 
_model_server_result.datetime_utc      '2024-11-20 02:30:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1mz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":655}' 
#
_entry.id    1MZ6 
#
_exptl.entry_id    1MZ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1MZ6 
_cell.length_a            76.2 
_cell.length_b            93.8 
_cell.length_c            105.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1MZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 397 A CYS 397 1_555 A SG CYS 411 A CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
covale ? covale1 A ND2 ASN 15 A ASN 15 1_555 E C1 NAG . A NAG 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 A ND2 ASN 24 A ASN 24 1_555 F C1 NAG . A NAG 655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale3 A ND2 ASN 115 A ASN 115 1_555 D C1 NAG . A NAG 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale4 A ND2 ASN 429 A ASN 429 1_555 C C1 NAG . A NAG 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale5 A ND2 ASN 614 A ASN 614 1_555 B C1 NAG . A NAG 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 274 n n 
C1 O1 NAG sing 275 n n 
C1 O5 NAG sing 276 n n 
C1 H1 NAG sing 277 n n 
C2 C3 NAG sing 278 n n 
C2 N2 NAG sing 279 n n 
C2 H2 NAG sing 280 n n 
C3 C4 NAG sing 281 n n 
C3 O3 NAG sing 282 n n 
C3 H3 NAG sing 283 n n 
C4 C5 NAG sing 284 n n 
C4 O4 NAG sing 285 n n 
C4 H4 NAG sing 286 n n 
C5 C6 NAG sing 287 n n 
C5 O5 NAG sing 288 n n 
C5 H5 NAG sing 289 n n 
C6 O6 NAG sing 290 n n 
C6 H61 NAG sing 291 n n 
C6 H62 NAG sing 292 n n 
C7 C8 NAG sing 293 n n 
C7 N2 NAG sing 294 n n 
C7 O7 NAG doub 295 n n 
C8 H81 NAG sing 296 n n 
C8 H82 NAG sing 297 n n 
C8 H83 NAG sing 298 n n 
N2 HN2 NAG sing 299 n n 
O1 HO1 NAG sing 300 n n 
O3 HO3 NAG sing 301 n n 
O4 HO4 NAG sing 302 n n 
O6 HO6 NAG sing 303 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1MZ6 
_atom_sites.fract_transf_matrix[1][1]    0.013123 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010661 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 651 651 NAG NAG . 
C 2 NAG A 1 652 652 NAG NAG . 
D 2 NAG A 1 653 653 NAG NAG . 
E 2 NAG A 1 654 654 NAG NAG . 
F 2 NAG A 1 655 655 NAG NAG . 
G 3 DAN A 1 700 700 DAN DAN . 
H 4 HOH A 1 701 1 HOH HOH . 
H 4 HOH A 2 702 2 HOH HOH . 
H 4 HOH A 3 703 3 HOH HOH . 
H 4 HOH A 4 704 4 HOH HOH . 
H 4 HOH A 5 705 5 HOH HOH . 
H 4 HOH A 6 706 6 HOH HOH . 
H 4 HOH A 7 707 7 HOH HOH . 
H 4 HOH A 8 708 8 HOH HOH . 
H 4 HOH A 9 709 9 HOH HOH . 
H 4 HOH A 10 710 10 HOH HOH . 
H 4 HOH A 11 711 11 HOH HOH . 
H 4 HOH A 12 712 12 HOH HOH . 
H 4 HOH A 13 713 13 HOH HOH . 
H 4 HOH A 14 714 14 HOH HOH . 
H 4 HOH A 15 715 15 HOH HOH . 
H 4 HOH A 16 716 16 HOH HOH . 
H 4 HOH A 17 717 17 HOH HOH . 
H 4 HOH A 18 718 18 HOH HOH . 
H 4 HOH A 19 719 19 HOH HOH . 
H 4 HOH A 20 720 20 HOH HOH . 
H 4 HOH A 21 721 21 HOH HOH . 
H 4 HOH A 22 722 22 HOH HOH . 
H 4 HOH A 23 723 23 HOH HOH . 
H 4 HOH A 24 724 24 HOH HOH . 
H 4 HOH A 25 725 25 HOH HOH . 
H 4 HOH A 26 726 26 HOH HOH . 
H 4 HOH A 27 727 27 HOH HOH . 
H 4 HOH A 28 728 28 HOH HOH . 
H 4 HOH A 29 729 29 HOH HOH . 
H 4 HOH A 30 730 30 HOH HOH . 
H 4 HOH A 31 731 31 HOH HOH . 
H 4 HOH A 32 732 32 HOH HOH . 
H 4 HOH A 33 733 33 HOH HOH . 
H 4 HOH A 34 734 34 HOH HOH . 
H 4 HOH A 35 735 35 HOH HOH . 
H 4 HOH A 36 736 36 HOH HOH . 
H 4 HOH A 37 737 37 HOH HOH . 
H 4 HOH A 38 738 38 HOH HOH . 
H 4 HOH A 39 739 39 HOH HOH . 
H 4 HOH A 40 740 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 2 11.299 22.418 24.949 1 48.35 ? C1 NAG 655 A 1 
HETATM 2 C C2 NAG . . . F 2 11.083 23.551 25.973 1 51.92 ? C2 NAG 655 A 1 
HETATM 3 C C3 NAG . . . F 2 12.278 23.464 26.91 1 52.32 ? C3 NAG 655 A 1 
HETATM 4 C C4 NAG . . . F 2 11.971 22.168 27.66 1 51.14 ? C4 NAG 655 A 1 
HETATM 5 C C5 NAG . . . F 2 12.389 21.093 26.634 1 51.36 ? C5 NAG 655 A 1 
HETATM 6 C C6 NAG . . . F 2 12.48 19.613 27.052 1 51.28 ? C6 NAG 655 A 1 
HETATM 7 C C7 NAG . . . F 2 9.737 25.58 25.796 1 51.06 ? C7 NAG 655 A 1 
HETATM 8 C C8 NAG . . . F 2 9.716 27.096 25.56 1 52.2 ? C8 NAG 655 A 1 
HETATM 9 N N2 NAG . . . F 2 10.85 24.913 25.453 1 51.37 ? N2 NAG 655 A 1 
HETATM 10 O O3 NAG . . . F 2 12.518 24.651 27.655 1 53.56 ? O3 NAG 655 A 1 
HETATM 11 O O4 NAG . . . F 2 12.623 22.074 28.9 1 49.74 ? O4 NAG 655 A 1 
HETATM 12 O O5 NAG . . . F 2 11.476 21.156 25.557 1 48.84 ? O5 NAG 655 A 1 
HETATM 13 O O6 NAG . . . F 2 12.595 19.426 28.444 1 51.97 ? O6 NAG 655 A 1 
HETATM 14 O O7 NAG . . . F 2 8.776 24.973 26.3 1 46.4 ? O7 NAG 655 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           231 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#