data_1MZV # _model_server_result.job_id Wi5sMuIfBngsvTZNUSdo2g _model_server_result.datetime_utc '2024-11-18 09:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1mzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1MZV # _exptl.entry_id 1MZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1MZV _cell.length_a 64.538 _cell.length_b 64.538 _cell.length_c 234.44 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1MZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 117.22 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1MZV _atom_sites.fract_transf_matrix[1][1] 0.015495 _atom_sites.fract_transf_matrix[1][2] 0.008946 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 401 1 PO4 PO4 . C 3 AMP A 1 301 1 AMP AMP . D 4 HOH A 1 402 1 HOH HOH . D 4 HOH A 2 403 2 HOH HOH . D 4 HOH A 3 404 3 HOH HOH . D 4 HOH A 4 405 4 HOH HOH . D 4 HOH A 5 406 5 HOH HOH . D 4 HOH A 6 407 6 HOH HOH . D 4 HOH A 7 408 7 HOH HOH . D 4 HOH A 8 409 8 HOH HOH . D 4 HOH A 9 410 9 HOH HOH . D 4 HOH A 10 411 10 HOH HOH . D 4 HOH A 11 412 11 HOH HOH . D 4 HOH A 12 413 12 HOH HOH . D 4 HOH A 13 414 13 HOH HOH . D 4 HOH A 14 415 14 HOH HOH . D 4 HOH A 15 416 15 HOH HOH . D 4 HOH A 16 417 16 HOH HOH . D 4 HOH A 17 418 17 HOH HOH . D 4 HOH A 18 419 18 HOH HOH . D 4 HOH A 19 420 19 HOH HOH . D 4 HOH A 20 421 20 HOH HOH . D 4 HOH A 21 422 21 HOH HOH . D 4 HOH A 22 423 22 HOH HOH . D 4 HOH A 23 424 23 HOH HOH . D 4 HOH A 24 425 24 HOH HOH . D 4 HOH A 25 426 25 HOH HOH . D 4 HOH A 26 427 26 HOH HOH . D 4 HOH A 27 428 27 HOH HOH . D 4 HOH A 28 429 28 HOH HOH . D 4 HOH A 29 430 29 HOH HOH . D 4 HOH A 30 431 30 HOH HOH . D 4 HOH A 31 432 31 HOH HOH . D 4 HOH A 32 433 32 HOH HOH . D 4 HOH A 33 434 33 HOH HOH . D 4 HOH A 34 435 34 HOH HOH . D 4 HOH A 35 436 35 HOH HOH . D 4 HOH A 36 437 36 HOH HOH . D 4 HOH A 37 438 37 HOH HOH . D 4 HOH A 38 439 38 HOH HOH . D 4 HOH A 39 440 39 HOH HOH . D 4 HOH A 40 441 40 HOH HOH . D 4 HOH A 41 442 41 HOH HOH . D 4 HOH A 42 443 42 HOH HOH . D 4 HOH A 43 444 43 HOH HOH . D 4 HOH A 44 445 44 HOH HOH . D 4 HOH A 45 446 45 HOH HOH . D 4 HOH A 46 447 46 HOH HOH . D 4 HOH A 47 448 47 HOH HOH . D 4 HOH A 48 449 48 HOH HOH . D 4 HOH A 49 450 49 HOH HOH . D 4 HOH A 50 451 50 HOH HOH . D 4 HOH A 51 452 51 HOH HOH . D 4 HOH A 52 453 52 HOH HOH . D 4 HOH A 53 454 53 HOH HOH . D 4 HOH A 54 455 54 HOH HOH . D 4 HOH A 55 456 55 HOH HOH . D 4 HOH A 56 457 56 HOH HOH . D 4 HOH A 57 458 57 HOH HOH . D 4 HOH A 58 459 58 HOH HOH . D 4 HOH A 59 460 59 HOH HOH . D 4 HOH A 60 461 60 HOH HOH . D 4 HOH A 61 462 61 HOH HOH . D 4 HOH A 62 463 62 HOH HOH . D 4 HOH A 63 464 63 HOH HOH . D 4 HOH A 64 465 64 HOH HOH . D 4 HOH A 65 466 65 HOH HOH . D 4 HOH A 66 467 66 HOH HOH . D 4 HOH A 67 468 67 HOH HOH . D 4 HOH A 68 469 68 HOH HOH . D 4 HOH A 69 470 69 HOH HOH . D 4 HOH A 70 471 70 HOH HOH . D 4 HOH A 71 472 71 HOH HOH . D 4 HOH A 72 473 72 HOH HOH . D 4 HOH A 73 474 73 HOH HOH . D 4 HOH A 74 475 74 HOH HOH . D 4 HOH A 75 476 75 HOH HOH . D 4 HOH A 76 477 76 HOH HOH . D 4 HOH A 77 478 77 HOH HOH . D 4 HOH A 78 479 78 HOH HOH . D 4 HOH A 79 480 79 HOH HOH . D 4 HOH A 80 481 80 HOH HOH . D 4 HOH A 81 482 81 HOH HOH . D 4 HOH A 82 483 82 HOH HOH . D 4 HOH A 83 484 83 HOH HOH . D 4 HOH A 84 485 84 HOH HOH . D 4 HOH A 85 486 85 HOH HOH . D 4 HOH A 86 487 86 HOH HOH . D 4 HOH A 87 488 87 HOH HOH . D 4 HOH A 88 489 88 HOH HOH . D 4 HOH A 89 490 89 HOH HOH . D 4 HOH A 90 491 90 HOH HOH . D 4 HOH A 91 492 91 HOH HOH . D 4 HOH A 92 493 92 HOH HOH . D 4 HOH A 93 494 93 HOH HOH . D 4 HOH A 94 495 94 HOH HOH . D 4 HOH A 95 496 95 HOH HOH . D 4 HOH A 96 497 96 HOH HOH . D 4 HOH A 97 498 97 HOH HOH . D 4 HOH A 98 499 98 HOH HOH . D 4 HOH A 99 500 99 HOH HOH . D 4 HOH A 100 501 100 HOH HOH . D 4 HOH A 101 502 101 HOH HOH . D 4 HOH A 102 503 102 HOH HOH . D 4 HOH A 103 504 103 HOH HOH . D 4 HOH A 104 505 104 HOH HOH . D 4 HOH A 105 506 105 HOH HOH . D 4 HOH A 106 507 106 HOH HOH . D 4 HOH A 107 508 107 HOH HOH . D 4 HOH A 108 509 108 HOH HOH . D 4 HOH A 109 510 109 HOH HOH . D 4 HOH A 110 511 110 HOH HOH . D 4 HOH A 111 512 111 HOH HOH . D 4 HOH A 112 513 112 HOH HOH . D 4 HOH A 113 514 113 HOH HOH . D 4 HOH A 114 515 114 HOH HOH . D 4 HOH A 115 516 115 HOH HOH . D 4 HOH A 116 517 116 HOH HOH . D 4 HOH A 117 518 117 HOH HOH . D 4 HOH A 118 519 118 HOH HOH . D 4 HOH A 119 520 120 HOH HOH . D 4 HOH A 120 521 121 HOH HOH . D 4 HOH A 121 522 122 HOH HOH . D 4 HOH A 122 523 123 HOH HOH . D 4 HOH A 123 524 124 HOH HOH . D 4 HOH A 124 525 125 HOH HOH . D 4 HOH A 125 526 126 HOH HOH . D 4 HOH A 126 527 127 HOH HOH . D 4 HOH A 127 528 128 HOH HOH . D 4 HOH A 128 529 129 HOH HOH . D 4 HOH A 129 530 130 HOH HOH . D 4 HOH A 130 531 131 HOH HOH . D 4 HOH A 131 532 132 HOH HOH . D 4 HOH A 132 533 133 HOH HOH . D 4 HOH A 133 534 134 HOH HOH . D 4 HOH A 134 535 135 HOH HOH . D 4 HOH A 135 536 136 HOH HOH . D 4 HOH A 136 537 137 HOH HOH . D 4 HOH A 137 538 138 HOH HOH . D 4 HOH A 138 539 139 HOH HOH . D 4 HOH A 139 540 140 HOH HOH . D 4 HOH A 140 541 141 HOH HOH . D 4 HOH A 141 542 142 HOH HOH . D 4 HOH A 142 543 143 HOH HOH . D 4 HOH A 143 544 144 HOH HOH . D 4 HOH A 144 545 145 HOH HOH . D 4 HOH A 145 546 146 HOH HOH . D 4 HOH A 146 547 147 HOH HOH . D 4 HOH A 147 548 148 HOH HOH . D 4 HOH A 148 549 149 HOH HOH . D 4 HOH A 149 550 150 HOH HOH . D 4 HOH A 150 551 151 HOH HOH . D 4 HOH A 151 552 152 HOH HOH . D 4 HOH A 152 553 153 HOH HOH . D 4 HOH A 153 554 154 HOH HOH . D 4 HOH A 154 555 155 HOH HOH . D 4 HOH A 155 556 156 HOH HOH . D 4 HOH A 156 557 157 HOH HOH . D 4 HOH A 157 558 158 HOH HOH . D 4 HOH A 158 559 159 HOH HOH . D 4 HOH A 159 560 160 HOH HOH . D 4 HOH A 160 561 161 HOH HOH . D 4 HOH A 161 562 162 HOH HOH . D 4 HOH A 162 563 163 HOH HOH . D 4 HOH A 163 564 164 HOH HOH . D 4 HOH A 164 565 165 HOH HOH . D 4 HOH A 165 566 166 HOH HOH . D 4 HOH A 166 567 167 HOH HOH . D 4 HOH A 167 568 168 HOH HOH . D 4 HOH A 168 569 169 HOH HOH . D 4 HOH A 169 570 170 HOH HOH . D 4 HOH A 170 571 171 HOH HOH . D 4 HOH A 171 572 172 HOH HOH . D 4 HOH A 172 573 173 HOH HOH . D 4 HOH A 173 574 174 HOH HOH . D 4 HOH A 174 575 175 HOH HOH . D 4 HOH A 175 576 176 HOH HOH . D 4 HOH A 176 577 177 HOH HOH . D 4 HOH A 177 578 178 HOH HOH . D 4 HOH A 178 579 179 HOH HOH . D 4 HOH A 179 580 180 HOH HOH . D 4 HOH A 180 581 181 HOH HOH . D 4 HOH A 181 582 182 HOH HOH . D 4 HOH A 182 583 183 HOH HOH . D 4 HOH A 183 584 184 HOH HOH . D 4 HOH A 184 585 185 HOH HOH . D 4 HOH A 185 586 186 HOH HOH . D 4 HOH A 186 587 187 HOH HOH . D 4 HOH A 187 588 188 HOH HOH . D 4 HOH A 188 589 189 HOH HOH . D 4 HOH A 189 590 190 HOH HOH . D 4 HOH A 190 591 191 HOH HOH . D 4 HOH A 191 592 192 HOH HOH . D 4 HOH A 192 593 193 HOH HOH . D 4 HOH A 193 594 194 HOH HOH . D 4 HOH A 194 595 195 HOH HOH . D 4 HOH A 195 596 196 HOH HOH . D 4 HOH A 196 597 197 HOH HOH . D 4 HOH A 197 598 198 HOH HOH . D 4 HOH A 198 599 199 HOH HOH . D 4 HOH A 199 600 200 HOH HOH . D 4 HOH A 200 601 201 HOH HOH . D 4 HOH A 201 602 202 HOH HOH . D 4 HOH A 202 603 203 HOH HOH . D 4 HOH A 203 604 204 HOH HOH . D 4 HOH A 204 605 205 HOH HOH . D 4 HOH A 205 606 206 HOH HOH . D 4 HOH A 206 607 207 HOH HOH . D 4 HOH A 207 608 208 HOH HOH . D 4 HOH A 208 609 209 HOH HOH . D 4 HOH A 209 610 210 HOH HOH . D 4 HOH A 210 611 211 HOH HOH . D 4 HOH A 211 612 212 HOH HOH . D 4 HOH A 212 613 213 HOH HOH . D 4 HOH A 213 614 214 HOH HOH . D 4 HOH A 214 615 215 HOH HOH . D 4 HOH A 215 616 216 HOH HOH . D 4 HOH A 216 617 217 HOH HOH . D 4 HOH A 217 618 218 HOH HOH . D 4 HOH A 218 619 219 HOH HOH . D 4 HOH A 219 620 220 HOH HOH . D 4 HOH A 220 621 221 HOH HOH . D 4 HOH A 221 622 222 HOH HOH . D 4 HOH A 222 623 223 HOH HOH . D 4 HOH A 223 624 224 HOH HOH . D 4 HOH A 224 625 225 HOH HOH . D 4 HOH A 225 626 226 HOH HOH . D 4 HOH A 226 627 227 HOH HOH . D 4 HOH A 227 628 228 HOH HOH . D 4 HOH A 228 629 229 HOH HOH . D 4 HOH A 229 630 230 HOH HOH . D 4 HOH A 230 631 231 HOH HOH . D 4 HOH A 231 632 232 HOH HOH . D 4 HOH A 232 633 233 HOH HOH . D 4 HOH A 233 634 234 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 10.964 39.79 69.026 1 28.64 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . C 3 9.627 40.247 69.498 1 24.19 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . C 3 11.356 38.467 69.749 1 26.74 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . C 3 12.073 40.804 69.193 1 26.58 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . C 3 10.875 39.571 67.448 1 29.88 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . C 3 10.285 38.412 66.922 1 30.07 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . C 3 9.307 38.782 65.836 1 30.66 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . C 3 9.94 39.596 64.863 1 28.21 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . C 3 8.867 37.472 65.203 1 32.47 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . C 3 7.472 37.49 64.95 1 32.65 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . C 3 9.735 37.371 63.956 1 32.08 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . C 3 8.965 36.986 62.837 1 32.26 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . C 3 10.34 38.771 63.782 1 31.3 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . C 3 11.813 38.815 63.684 1 30.38 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . C 3 12.676 39.295 64.626 1 29.98 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . C 3 13.937 39.213 64.155 1 29.78 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . C 3 13.913 38.698 62.929 1 28.34 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . C 3 14.928 38.396 62.039 1 28.2 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . C 3 16.188 38.663 62.352 1 28.55 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . C 3 14.617 37.842 60.817 1 28.75 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . C 3 13.294 37.58 60.505 1 29.77 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . C 3 12.296 37.88 61.424 1 26.82 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . C 3 12.587 38.44 62.611 1 29.35 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #