data_1N06 # _model_server_result.job_id LGhLB9npjoS6V-xjFZ8zag _model_server_result.datetime_utc '2025-03-06 07:14:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n06 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 1N06 # _exptl.entry_id 1N06 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.11 _cell.angle_beta 111.22 _cell.angle_gamma 97.04 _cell.entry_id 1N06 _cell.length_a 38.979 _cell.length_b 45.613 _cell.length_c 52.105 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N06 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1N06 _atom_sites.fract_transf_matrix[1][1] 0.025655 _atom_sites.fract_transf_matrix[1][2] 0.003168 _atom_sites.fract_transf_matrix[1][3] 0.010204 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02209 _atom_sites.fract_transf_matrix[2][3] 0.001525 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 201 1 ADP ADP . D 2 ADP B 1 301 1 ADP ADP . E 3 HOH A 1 202 1 HOH TIP . E 3 HOH A 2 203 3 HOH TIP . E 3 HOH A 3 204 4 HOH TIP . E 3 HOH A 4 205 5 HOH TIP . E 3 HOH A 5 206 7 HOH TIP . E 3 HOH A 6 207 8 HOH TIP . E 3 HOH A 7 208 11 HOH TIP . E 3 HOH A 8 209 12 HOH TIP . E 3 HOH A 9 210 13 HOH TIP . E 3 HOH A 10 211 16 HOH TIP . E 3 HOH A 11 212 18 HOH TIP . E 3 HOH A 12 213 20 HOH TIP . E 3 HOH A 13 214 21 HOH TIP . E 3 HOH A 14 215 22 HOH TIP . E 3 HOH A 15 216 23 HOH TIP . E 3 HOH A 16 217 28 HOH TIP . E 3 HOH A 17 218 29 HOH TIP . E 3 HOH A 18 219 31 HOH TIP . E 3 HOH A 19 220 32 HOH TIP . E 3 HOH A 20 221 33 HOH TIP . E 3 HOH A 21 222 34 HOH TIP . E 3 HOH A 22 223 35 HOH TIP . E 3 HOH A 23 224 37 HOH TIP . E 3 HOH A 24 225 38 HOH TIP . E 3 HOH A 25 226 39 HOH TIP . E 3 HOH A 26 227 40 HOH TIP . E 3 HOH A 27 228 41 HOH TIP . E 3 HOH A 28 229 43 HOH TIP . E 3 HOH A 29 230 44 HOH TIP . E 3 HOH A 30 231 45 HOH TIP . E 3 HOH A 31 232 47 HOH TIP . E 3 HOH A 32 233 49 HOH TIP . E 3 HOH A 33 234 50 HOH TIP . E 3 HOH A 34 235 51 HOH TIP . E 3 HOH A 35 236 52 HOH TIP . E 3 HOH A 36 237 54 HOH TIP . E 3 HOH A 37 238 55 HOH TIP . E 3 HOH A 38 239 57 HOH TIP . E 3 HOH A 39 240 58 HOH TIP . E 3 HOH A 40 241 60 HOH TIP . E 3 HOH A 41 242 62 HOH TIP . E 3 HOH A 42 243 63 HOH TIP . E 3 HOH A 43 244 64 HOH TIP . E 3 HOH A 44 245 65 HOH TIP . E 3 HOH A 45 246 66 HOH TIP . E 3 HOH A 46 247 67 HOH TIP . E 3 HOH A 47 248 70 HOH TIP . E 3 HOH A 48 249 71 HOH TIP . E 3 HOH A 49 250 72 HOH TIP . E 3 HOH A 50 251 74 HOH TIP . E 3 HOH A 51 252 77 HOH TIP . E 3 HOH A 52 253 78 HOH TIP . E 3 HOH A 53 254 79 HOH TIP . E 3 HOH A 54 255 85 HOH TIP . E 3 HOH A 55 256 87 HOH TIP . E 3 HOH A 56 257 89 HOH TIP . E 3 HOH A 57 258 91 HOH TIP . E 3 HOH A 58 259 92 HOH TIP . E 3 HOH A 59 260 93 HOH TIP . E 3 HOH A 60 261 94 HOH TIP . E 3 HOH A 61 262 95 HOH TIP . E 3 HOH A 62 263 96 HOH TIP . E 3 HOH A 63 264 98 HOH TIP . E 3 HOH A 64 265 99 HOH TIP . E 3 HOH A 65 266 100 HOH TIP . E 3 HOH A 66 267 102 HOH TIP . E 3 HOH A 67 268 105 HOH TIP . E 3 HOH A 68 269 107 HOH TIP . E 3 HOH A 69 270 112 HOH TIP . E 3 HOH A 70 271 113 HOH TIP . E 3 HOH A 71 272 114 HOH TIP . E 3 HOH A 72 273 118 HOH TIP . E 3 HOH A 73 274 119 HOH TIP . E 3 HOH A 74 275 122 HOH TIP . E 3 HOH A 75 276 124 HOH TIP . E 3 HOH A 76 277 126 HOH TIP . E 3 HOH A 77 278 127 HOH TIP . E 3 HOH A 78 279 128 HOH TIP . E 3 HOH A 79 280 130 HOH TIP . E 3 HOH A 80 281 131 HOH TIP . E 3 HOH A 81 282 139 HOH TIP . E 3 HOH A 82 283 144 HOH TIP . E 3 HOH A 83 284 146 HOH TIP . E 3 HOH A 84 285 147 HOH TIP . E 3 HOH A 85 286 148 HOH TIP . E 3 HOH A 86 287 150 HOH TIP . E 3 HOH A 87 288 152 HOH TIP . E 3 HOH A 88 289 154 HOH TIP . F 3 HOH B 1 302 2 HOH TIP . F 3 HOH B 2 303 6 HOH TIP . F 3 HOH B 3 304 9 HOH TIP . F 3 HOH B 4 305 10 HOH TIP . F 3 HOH B 5 306 14 HOH TIP . F 3 HOH B 6 307 15 HOH TIP . F 3 HOH B 7 308 17 HOH TIP . F 3 HOH B 8 309 19 HOH TIP . F 3 HOH B 9 310 24 HOH TIP . F 3 HOH B 10 311 25 HOH TIP . F 3 HOH B 11 312 26 HOH TIP . F 3 HOH B 12 313 27 HOH TIP . F 3 HOH B 13 314 30 HOH TIP . F 3 HOH B 14 315 36 HOH TIP . F 3 HOH B 15 316 42 HOH TIP . F 3 HOH B 16 317 46 HOH TIP . F 3 HOH B 17 318 48 HOH TIP . F 3 HOH B 18 319 53 HOH TIP . F 3 HOH B 19 320 56 HOH TIP . F 3 HOH B 20 321 59 HOH TIP . F 3 HOH B 21 322 61 HOH TIP . F 3 HOH B 22 323 68 HOH TIP . F 3 HOH B 23 324 69 HOH TIP . F 3 HOH B 24 325 73 HOH TIP . F 3 HOH B 25 326 75 HOH TIP . F 3 HOH B 26 327 76 HOH TIP . F 3 HOH B 27 328 80 HOH TIP . F 3 HOH B 28 329 81 HOH TIP . F 3 HOH B 29 330 82 HOH TIP . F 3 HOH B 30 331 83 HOH TIP . F 3 HOH B 31 332 84 HOH TIP . F 3 HOH B 32 333 86 HOH TIP . F 3 HOH B 33 334 88 HOH TIP . F 3 HOH B 34 335 90 HOH TIP . F 3 HOH B 35 336 97 HOH TIP . F 3 HOH B 36 337 101 HOH TIP . F 3 HOH B 37 338 103 HOH TIP . F 3 HOH B 38 339 104 HOH TIP . F 3 HOH B 39 340 106 HOH TIP . F 3 HOH B 40 341 108 HOH TIP . F 3 HOH B 41 342 109 HOH TIP . F 3 HOH B 42 343 110 HOH TIP . F 3 HOH B 43 344 111 HOH TIP . F 3 HOH B 44 345 115 HOH TIP . F 3 HOH B 45 346 116 HOH TIP . F 3 HOH B 46 347 117 HOH TIP . F 3 HOH B 47 348 120 HOH TIP . F 3 HOH B 48 349 121 HOH TIP . F 3 HOH B 49 350 123 HOH TIP . F 3 HOH B 50 351 125 HOH TIP . F 3 HOH B 51 352 129 HOH TIP . F 3 HOH B 52 353 132 HOH TIP . F 3 HOH B 53 354 133 HOH TIP . F 3 HOH B 54 355 134 HOH TIP . F 3 HOH B 55 356 135 HOH TIP . F 3 HOH B 56 357 136 HOH TIP . F 3 HOH B 57 358 137 HOH TIP . F 3 HOH B 58 359 138 HOH TIP . F 3 HOH B 59 360 140 HOH TIP . F 3 HOH B 60 361 141 HOH TIP . F 3 HOH B 61 362 142 HOH TIP . F 3 HOH B 62 363 143 HOH TIP . F 3 HOH B 63 364 145 HOH TIP . F 3 HOH B 64 365 149 HOH TIP . F 3 HOH B 65 366 151 HOH TIP . F 3 HOH B 66 367 153 HOH TIP . F 3 HOH B 67 368 155 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 1.928 5.8 -14.963 1 47.26 ? PB ADP 201 A 1 HETATM 2 O O1B ADP . . . C 2 2.754 5.244 -13.852 1 46.32 ? O1B ADP 201 A 1 HETATM 3 O O2B ADP . . . C 2 1.12 6.939 -14.424 1 45 ? O2B ADP 201 A 1 HETATM 4 O O3B ADP . . . C 2 2.893 6.32 -16.139 1 44.11 ? O3B ADP 201 A 1 HETATM 5 P PA ADP . . . C 2 1.563 3.256 -15.834 1 38.82 ? PA ADP 201 A 1 HETATM 6 O O1A ADP . . . C 2 2.948 3.203 -16.378 1 40.39 ? O1A ADP 201 A 1 HETATM 7 O O2A ADP . . . C 2 0.675 2.554 -16.795 1 40.93 ? O2A ADP 201 A 1 HETATM 8 O O3A ADP . . . C 2 0.908 4.73 -15.609 1 42.46 ? O3A ADP 201 A 1 HETATM 9 O O5' ADP . . . C 2 1.537 2.485 -14.42 1 34.68 ? O5' ADP 201 A 1 HETATM 10 C C5' ADP . . . C 2 0.429 2.599 -13.502 1 29.12 ? C5' ADP 201 A 1 HETATM 11 C C4' ADP . . . C 2 -0.609 1.471 -13.756 1 24.1 ? C4' ADP 201 A 1 HETATM 12 O O4' ADP . . . C 2 -0.081 0.161 -13.547 1 22.91 ? O4' ADP 201 A 1 HETATM 13 C C3' ADP . . . C 2 -1.811 1.514 -12.799 1 22.34 ? C3' ADP 201 A 1 HETATM 14 O O3' ADP . . . C 2 -2.742 2.552 -13.134 1 23.67 ? O3' ADP 201 A 1 HETATM 15 C C2' ADP . . . C 2 -2.366 0.098 -12.881 1 21.75 ? C2' ADP 201 A 1 HETATM 16 O O2' ADP . . . C 2 -3.483 0.06 -13.799 1 19.75 ? O2' ADP 201 A 1 HETATM 17 C C1' ADP . . . C 2 -1.17 -0.75 -13.372 1 18.98 ? C1' ADP 201 A 1 HETATM 18 N N9 ADP . . . C 2 -0.673 -1.768 -12.447 1 18.66 ? N9 ADP 201 A 1 HETATM 19 C C8 ADP . . . C 2 -0.353 -2.997 -12.753 1 19.25 ? C8 ADP 201 A 1 HETATM 20 N N7 ADP . . . C 2 0.07 -3.657 -11.753 1 20.26 ? N7 ADP 201 A 1 HETATM 21 C C5 ADP . . . C 2 0.055 -2.874 -10.655 1 20.57 ? C5 ADP 201 A 1 HETATM 22 C C6 ADP . . . C 2 0.412 -3.044 -9.305 1 18.53 ? C6 ADP 201 A 1 HETATM 23 N N6 ADP . . . C 2 0.886 -4.195 -8.821 1 18.99 ? N6 ADP 201 A 1 HETATM 24 N N1 ADP . . . C 2 0.248 -1.971 -8.472 1 18.36 ? N1 ADP 201 A 1 HETATM 25 C C2 ADP . . . C 2 -0.231 -0.762 -8.913 1 17.72 ? C2 ADP 201 A 1 HETATM 26 N N3 ADP . . . C 2 -0.57 -0.584 -10.22 1 17.82 ? N3 ADP 201 A 1 HETATM 27 C C4 ADP . . . C 2 -0.429 -1.628 -11.092 1 19.35 ? C4 ADP 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #