data_1N07 # _model_server_result.job_id PJblQm1_rUTHV7VK5cUV6g _model_server_result.datetime_utc '2025-03-06 07:17:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n07 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 1N07 # _exptl.entry_id 1N07 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.69 _cell.angle_beta 111.03 _cell.angle_gamma 97.31 _cell.entry_id 1N07 _cell.length_a 38.807 _cell.length_b 45.767 _cell.length_c 51.895 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N07 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1N07 _atom_sites.fract_transf_matrix[1][1] 0.025769 _atom_sites.fract_transf_matrix[1][2] 0.003306 _atom_sites.fract_transf_matrix[1][3] 0.010133 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022029 _atom_sites.fract_transf_matrix[2][3] 0.001376 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 164 1 ADP ADP . D 3 FMN A 1 165 2 FMN FMN . E 2 ADP B 1 201 1 ADP ADP . F 3 FMN B 1 202 2 FMN FMN . G 4 HOH A 1 166 1 HOH TIP . G 4 HOH A 2 167 4 HOH TIP . G 4 HOH A 3 168 6 HOH TIP . G 4 HOH A 4 169 9 HOH TIP . G 4 HOH A 5 170 10 HOH TIP . G 4 HOH A 6 171 12 HOH TIP . G 4 HOH A 7 172 14 HOH TIP . G 4 HOH A 8 173 17 HOH TIP . G 4 HOH A 9 174 18 HOH TIP . G 4 HOH A 10 175 20 HOH TIP . G 4 HOH A 11 176 21 HOH TIP . G 4 HOH A 12 177 22 HOH TIP . G 4 HOH A 13 178 23 HOH TIP . G 4 HOH A 14 179 25 HOH TIP . G 4 HOH A 15 180 27 HOH TIP . G 4 HOH A 16 181 30 HOH TIP . G 4 HOH A 17 182 31 HOH TIP . G 4 HOH A 18 183 36 HOH TIP . G 4 HOH A 19 184 37 HOH TIP . G 4 HOH A 20 185 41 HOH TIP . G 4 HOH A 21 186 43 HOH TIP . G 4 HOH A 22 187 44 HOH TIP . G 4 HOH A 23 188 46 HOH TIP . G 4 HOH A 24 189 47 HOH TIP . G 4 HOH A 25 190 49 HOH TIP . G 4 HOH A 26 191 50 HOH TIP . G 4 HOH A 27 192 51 HOH TIP . G 4 HOH A 28 193 53 HOH TIP . G 4 HOH A 29 194 54 HOH TIP . G 4 HOH A 30 195 55 HOH TIP . G 4 HOH A 31 196 56 HOH TIP . G 4 HOH A 32 197 57 HOH TIP . G 4 HOH A 33 198 58 HOH TIP . G 4 HOH A 34 199 59 HOH TIP . G 4 HOH A 35 200 60 HOH TIP . G 4 HOH A 36 201 63 HOH TIP . G 4 HOH A 37 202 67 HOH TIP . G 4 HOH A 38 203 69 HOH TIP . G 4 HOH A 39 204 72 HOH TIP . G 4 HOH A 40 205 78 HOH TIP . G 4 HOH A 41 206 79 HOH TIP . G 4 HOH A 42 207 81 HOH TIP . G 4 HOH A 43 208 82 HOH TIP . H 4 HOH B 1 203 2 HOH TIP . H 4 HOH B 2 204 3 HOH TIP . H 4 HOH B 3 205 5 HOH TIP . H 4 HOH B 4 206 7 HOH TIP . H 4 HOH B 5 207 8 HOH TIP . H 4 HOH B 6 208 11 HOH TIP . H 4 HOH B 7 209 13 HOH TIP . H 4 HOH B 8 210 15 HOH TIP . H 4 HOH B 9 211 16 HOH TIP . H 4 HOH B 10 212 19 HOH TIP . H 4 HOH B 11 213 24 HOH TIP . H 4 HOH B 12 214 26 HOH TIP . H 4 HOH B 13 215 28 HOH TIP . H 4 HOH B 14 216 29 HOH TIP . H 4 HOH B 15 217 32 HOH TIP . H 4 HOH B 16 218 33 HOH TIP . H 4 HOH B 17 219 34 HOH TIP . H 4 HOH B 18 220 35 HOH TIP . H 4 HOH B 19 221 38 HOH TIP . H 4 HOH B 20 222 39 HOH TIP . H 4 HOH B 21 223 40 HOH TIP . H 4 HOH B 22 224 42 HOH TIP . H 4 HOH B 23 225 45 HOH TIP . H 4 HOH B 24 226 48 HOH TIP . H 4 HOH B 25 227 52 HOH TIP . H 4 HOH B 26 228 61 HOH TIP . H 4 HOH B 27 229 62 HOH TIP . H 4 HOH B 28 230 64 HOH TIP . H 4 HOH B 29 231 65 HOH TIP . H 4 HOH B 30 232 66 HOH TIP . H 4 HOH B 31 233 68 HOH TIP . H 4 HOH B 32 234 70 HOH TIP . H 4 HOH B 33 235 71 HOH TIP . H 4 HOH B 34 236 73 HOH TIP . H 4 HOH B 35 237 74 HOH TIP . H 4 HOH B 36 238 75 HOH TIP . H 4 HOH B 37 239 76 HOH TIP . H 4 HOH B 38 240 77 HOH TIP . H 4 HOH B 39 241 80 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 0.918 6.052 -14.927 1 63.75 ? PB ADP 164 A 1 HETATM 2 O O1B ADP . . . C 2 0.616 5.898 -13.468 1 65.39 ? O1B ADP 164 A 1 HETATM 3 O O2B ADP . . . C 2 -0.248 6.741 -15.555 1 64.85 ? O2B ADP 164 A 1 HETATM 4 O O3B ADP . . . C 2 2.236 6.946 -15.098 1 65.7 ? O3B ADP 164 A 1 HETATM 5 P PA ADP . . . C 2 2.369 3.746 -15.037 1 56.4 ? PA ADP 164 A 1 HETATM 6 O O1A ADP . . . C 2 3.171 4.351 -13.947 1 56.56 ? O1A ADP 164 A 1 HETATM 7 O O2A ADP . . . C 2 3.292 3.355 -16.143 1 55.62 ? O2A ADP 164 A 1 HETATM 8 O O3A ADP . . . C 2 1.192 4.662 -15.703 1 60.3 ? O3A ADP 164 A 1 HETATM 9 O O5' ADP . . . C 2 1.706 2.442 -14.449 1 48.55 ? O5' ADP 164 A 1 HETATM 10 C C5' ADP . . . C 2 0.684 2.547 -13.494 1 36.92 ? C5' ADP 164 A 1 HETATM 11 C C4' ADP . . . C 2 -0.34 1.464 -13.794 1 31.29 ? C4' ADP 164 A 1 HETATM 12 O O4' ADP . . . C 2 0.177 0.137 -13.658 1 28.17 ? O4' ADP 164 A 1 HETATM 13 C C3' ADP . . . C 2 -1.522 1.481 -12.822 1 26.98 ? C3' ADP 164 A 1 HETATM 14 O O3' ADP . . . C 2 -2.415 2.541 -13.148 1 27.19 ? O3' ADP 164 A 1 HETATM 15 C C2' ADP . . . C 2 -2.107 0.083 -12.959 1 25.63 ? C2' ADP 164 A 1 HETATM 16 O O2' ADP . . . C 2 -3.221 0.127 -13.876 1 23.26 ? O2' ADP 164 A 1 HETATM 17 C C1' ADP . . . C 2 -0.916 -0.775 -13.506 1 26.75 ? C1' ADP 164 A 1 HETATM 18 N N9 ADP . . . C 2 -0.42 -1.833 -12.622 1 28.79 ? N9 ADP 164 A 1 HETATM 19 C C8 ADP . . . C 2 -0.18 -3.073 -12.962 1 31.13 ? C8 ADP 164 A 1 HETATM 20 N N7 ADP . . . C 2 0.246 -3.772 -12.003 1 29.64 ? N7 ADP 164 A 1 HETATM 21 C C5 ADP . . . C 2 0.336 -3.003 -10.9 1 27.8 ? C5 ADP 164 A 1 HETATM 22 C C6 ADP . . . C 2 0.735 -3.226 -9.557 1 24.92 ? C6 ADP 164 A 1 HETATM 23 N N6 ADP . . . C 2 1.181 -4.413 -9.122 1 24.59 ? N6 ADP 164 A 1 HETATM 24 N N1 ADP . . . C 2 0.673 -2.158 -8.696 1 21.87 ? N1 ADP 164 A 1 HETATM 25 C C2 ADP . . . C 2 0.221 -0.918 -9.09 1 22.78 ? C2 ADP 164 A 1 HETATM 26 N N3 ADP . . . C 2 -0.168 -0.691 -10.392 1 23.45 ? N3 ADP 164 A 1 HETATM 27 C C4 ADP . . . C 2 -0.128 -1.73 -11.284 1 28.67 ? C4 ADP 164 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #