data_1N15
#
_model_server_result.job_id            4DQhAgj5vuTD6U7r9YyOaw 
_model_server_result.datetime_utc      '2024-10-19 00:44:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1n15 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    1N15 
#
_exptl.entry_id    1N15 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1N15 
_cell.length_a            164.74 
_cell.length_b            89.91 
_cell.length_c            112.16 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1N15 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 47 A CYS 47 1_555 C CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? 
covale ? covale2 A SG CYS 50 A CYS 50 1_555 C CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
covale ? covale3 B SG CYS 47 B CYS 47 1_555 E CAB HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? 
covale ? covale4 B SG CYS 50 B CYS 50 1_555 E CAC HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? 
metalc ? metalc1 A NE2 HIS 51 A HIS 51 1_555 C FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc2 A SD MET 88 A MET 88 1_555 C FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc3 A NE2 HIS 182 A HIS 182 1_555 D FE DHE . A DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc4 B NE2 HIS 51 B HIS 51 1_555 E FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc5 B SD MET 88 B MET 88 1_555 E FE HEC . B HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc6 B NE2 HIS 182 B HIS 182 1_555 F FE DHE . B DHE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 217 n n 
FE NB HEC sing 218 n n 
FE NC HEC sing 219 n n 
FE ND HEC sing 220 n n 
CHA C1A HEC doub 221 n n 
CHA C4D HEC sing 222 n n 
CHA HHA HEC sing 223 n n 
CHB C4A HEC doub 224 n n 
CHB C1B HEC sing 225 n n 
CHB HHB HEC sing 226 n n 
CHC C4B HEC doub 227 n n 
CHC C1C HEC sing 228 n n 
CHC HHC HEC sing 229 n n 
CHD C4C HEC doub 230 n n 
CHD C1D HEC sing 231 n n 
CHD HHD HEC sing 232 n n 
NA C1A HEC sing 233 n y 
NA C4A HEC sing 234 n y 
C1A C2A HEC sing 235 n y 
C2A C3A HEC doub 236 n y 
C2A CAA HEC sing 237 n n 
C3A C4A HEC sing 238 n y 
C3A CMA HEC sing 239 n n 
CMA HMA1 HEC sing 240 n n 
CMA HMA2 HEC sing 241 n n 
CMA HMA3 HEC sing 242 n n 
CAA CBA HEC sing 243 n n 
CAA HAA1 HEC sing 244 n n 
CAA HAA2 HEC sing 245 n n 
CBA CGA HEC sing 246 n n 
CBA HBA1 HEC sing 247 n n 
CBA HBA2 HEC sing 248 n n 
CGA O1A HEC doub 249 n n 
CGA O2A HEC sing 250 n n 
O2A H2A HEC sing 251 n n 
NB C1B HEC sing 252 n y 
NB C4B HEC sing 253 n y 
C1B C2B HEC doub 254 n y 
C2B C3B HEC sing 255 n y 
C2B CMB HEC sing 256 n n 
C3B C4B HEC sing 257 n y 
C3B CAB HEC doub 258 e n 
CMB HMB1 HEC sing 259 n n 
CMB HMB2 HEC sing 260 n n 
CMB HMB3 HEC sing 261 n n 
CAB CBB HEC sing 262 n n 
CAB HAB HEC sing 263 n n 
CBB HBB1 HEC sing 264 n n 
CBB HBB2 HEC sing 265 n n 
CBB HBB3 HEC sing 266 n n 
NC C1C HEC sing 267 n y 
NC C4C HEC sing 268 n y 
C1C C2C HEC doub 269 n y 
C2C C3C HEC sing 270 n y 
C2C CMC HEC sing 271 n n 
C3C C4C HEC sing 272 n y 
C3C CAC HEC doub 273 e n 
CMC HMC1 HEC sing 274 n n 
CMC HMC2 HEC sing 275 n n 
CMC HMC3 HEC sing 276 n n 
CAC CBC HEC sing 277 n n 
CAC HAC HEC sing 278 n n 
CBC HBC1 HEC sing 279 n n 
CBC HBC2 HEC sing 280 n n 
CBC HBC3 HEC sing 281 n n 
ND C1D HEC sing 282 n y 
ND C4D HEC sing 283 n y 
C1D C2D HEC doub 284 n y 
C2D C3D HEC sing 285 n y 
C2D CMD HEC sing 286 n n 
C3D C4D HEC doub 287 n y 
C3D CAD HEC sing 288 n n 
CMD HMD1 HEC sing 289 n n 
CMD HMD2 HEC sing 290 n n 
CMD HMD3 HEC sing 291 n n 
CAD CBD HEC sing 292 n n 
CAD HAD1 HEC sing 293 n n 
CAD HAD2 HEC sing 294 n n 
CBD CGD HEC sing 295 n n 
CBD HBD1 HEC sing 296 n n 
CBD HBD2 HEC sing 297 n n 
CGD O1D HEC doub 298 n n 
CGD O2D HEC sing 299 n n 
O2D H2D HEC sing 300 n n 
#
_atom_sites.entry_id                     1N15 
_atom_sites.fract_transf_matrix[1][1]    0.00607 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011122 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEC A 1 601 601 HEC HEC . 
D 3 DHE A 1 602 602 DHE DHE . 
E 2 HEC B 1 601 601 HEC HEC . 
F 3 DHE B 1 602 602 DHE DHE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . C 2 42.889 9.98 7.002 1 25.05 ? FE HEC 601 A 1 
HETATM 2 C CHA HEC . . . C 2 42.632 6.649 7.167 1 25.05 ? CHA HEC 601 A 1 
HETATM 3 C CHB HEC . . . C 2 45.889 9.853 8.552 1 25.05 ? CHB HEC 601 A 1 
HETATM 4 C CHC HEC . . . C 2 43.306 13.318 6.593 1 25.05 ? CHC HEC 601 A 1 
HETATM 5 C CHD HEC . . . C 2 39.698 10.269 5.886 1 25.05 ? CHD HEC 601 A 1 
HETATM 6 N NA HEC . . . C 2 44.032 8.542 7.654 1 25.05 ? NA HEC 601 A 1 
HETATM 7 C C1A HEC . . . C 2 43.798 7.204 7.617 1 25.05 ? C1A HEC 601 A 1 
HETATM 8 C C2A HEC . . . C 2 44.894 6.484 8.141 1 25.05 ? C2A HEC 601 A 1 
HETATM 9 C C3A HEC . . . C 2 45.824 7.374 8.519 1 25.05 ? C3A HEC 601 A 1 
HETATM 10 C C4A HEC . . . C 2 45.268 8.656 8.237 1 25.05 ? C4A HEC 601 A 1 
HETATM 11 C CMA HEC . . . C 2 47.182 7.098 9.131 1 25.05 ? CMA HEC 601 A 1 
HETATM 12 C CAA HEC . . . C 2 45.041 4.975 8.152 1 25.05 ? CAA HEC 601 A 1 
HETATM 13 C CBA HEC . . . C 2 44.346 4.334 9.327 1 25.05 ? CBA HEC 601 A 1 
HETATM 14 C CGA HEC . . . C 2 44.72 2.872 9.488 1 25.05 ? CGA HEC 601 A 1 
HETATM 15 O O1A HEC . . . C 2 44.2 2.037 8.72 1 25.05 ? O1A HEC 601 A 1 
HETATM 16 O O2A HEC . . . C 2 45.538 2.574 10.383 1 25.05 ? O2A HEC 601 A 1 
HETATM 17 N NB HEC . . . C 2 44.225 11.309 7.559 1 25.05 ? NB HEC 601 A 1 
HETATM 18 C C1B HEC . . . C 2 45.396 11.108 8.256 1 25.05 ? C1B HEC 601 A 1 
HETATM 19 C C2B HEC . . . C 2 46.204 12.296 8.354 1 25.05 ? C2B HEC 601 A 1 
HETATM 20 C C3B HEC . . . C 2 45.521 13.239 7.677 1 25.05 ? C3B HEC 601 A 1 
HETATM 21 C C4B HEC . . . C 2 44.288 12.638 7.241 1 25.05 ? C4B HEC 601 A 1 
HETATM 22 C CMB HEC . . . C 2 47.484 12.403 9.154 1 25.05 ? CMB HEC 601 A 1 
HETATM 23 C CAB HEC . . . C 2 45.806 14.721 7.521 1 25.05 ? CAB HEC 601 A 1 
HETATM 24 C CBB HEC . . . C 2 47.125 15.293 7.008 1 25.05 ? CBB HEC 601 A 1 
HETATM 25 N NC HEC . . . C 2 41.79 11.466 6.315 1 25.05 ? NC HEC 601 A 1 
HETATM 26 C C1C HEC . . . C 2 42.141 12.782 6.122 1 25.05 ? C1C HEC 601 A 1 
HETATM 27 C C2C HEC . . . C 2 41.022 13.553 5.574 1 25.05 ? C2C HEC 601 A 1 
HETATM 28 C C3C HEC . . . C 2 39.987 12.685 5.447 1 25.05 ? C3C HEC 601 A 1 
HETATM 29 C C4C HEC . . . C 2 40.445 11.428 5.941 1 25.05 ? C4C HEC 601 A 1 
HETATM 30 C CMC HEC . . . C 2 41.044 15.067 5.315 1 25.05 ? CMC HEC 601 A 1 
HETATM 31 C CAC HEC . . . C 2 38.6 12.998 4.994 1 25.05 ? CAC HEC 601 A 1 
HETATM 32 C CBC HEC . . . C 2 38.232 13.897 3.76 1 25.05 ? CBC HEC 601 A 1 
HETATM 33 N ND HEC . . . C 2 41.487 8.707 6.521 1 25.05 ? ND HEC 601 A 1 
HETATM 34 C C1D HEC . . . C 2 40.184 8.979 6.093 1 25.05 ? C1D HEC 601 A 1 
HETATM 35 C C2D HEC . . . C 2 39.413 7.752 5.934 1 25.05 ? C2D HEC 601 A 1 
HETATM 36 C C3D HEC . . . C 2 40.226 6.755 6.301 1 25.05 ? C3D HEC 601 A 1 
HETATM 37 C C4D HEC . . . C 2 41.527 7.34 6.661 1 25.05 ? C4D HEC 601 A 1 
HETATM 38 C CMD HEC . . . C 2 38.01 7.586 5.47 1 25.05 ? CMD HEC 601 A 1 
HETATM 39 C CAD HEC . . . C 2 39.946 5.269 6.166 1 25.05 ? CAD HEC 601 A 1 
HETATM 40 C CBD HEC . . . C 2 40.659 4.857 4.885 1 25.05 ? CBD HEC 601 A 1 
HETATM 41 C CGD HEC . . . C 2 40.62 3.363 4.617 1 25.05 ? CGD HEC 601 A 1 
HETATM 42 O O1D HEC . . . C 2 40.835 2.978 3.44 1 25.05 ? O1D HEC 601 A 1 
HETATM 43 O O2D HEC . . . C 2 40.388 2.585 5.58 1 25.05 ? O2D HEC 601 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#