data_1N1F # _model_server_result.job_id vo6D1GN_9uBup73cXINChw _model_server_result.datetime_utc '2024-11-22 22:26:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1n1f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1N1F # _exptl.entry_id 1N1F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1N1F _cell.length_a 30.657 _cell.length_b 52.974 _cell.length_c 93.474 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1N1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 111 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A ND2 ASN 38 A ASN 38 1_555 B C1 NAG . A NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1N1F _atom_sites.fract_transf_matrix[1][1] 0.032619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 300 300 NAG NAG . C 3 HOH A 1 501 501 HOH WAT . C 3 HOH A 2 502 502 HOH WAT . C 3 HOH A 3 503 503 HOH WAT . C 3 HOH A 4 504 504 HOH WAT . C 3 HOH A 5 505 505 HOH WAT . C 3 HOH A 6 506 506 HOH WAT . C 3 HOH A 7 507 507 HOH WAT . C 3 HOH A 8 508 508 HOH WAT . C 3 HOH A 9 509 509 HOH WAT . C 3 HOH A 10 510 510 HOH WAT . C 3 HOH A 11 511 511 HOH WAT . C 3 HOH A 12 512 512 HOH WAT . C 3 HOH A 13 513 513 HOH WAT . C 3 HOH A 14 514 514 HOH WAT . C 3 HOH A 15 515 515 HOH WAT . C 3 HOH A 16 516 516 HOH WAT . C 3 HOH A 17 517 517 HOH WAT . C 3 HOH A 18 518 518 HOH WAT . C 3 HOH A 19 519 519 HOH WAT . C 3 HOH A 20 520 520 HOH WAT . C 3 HOH A 21 521 521 HOH WAT . C 3 HOH A 22 522 522 HOH WAT . C 3 HOH A 23 523 523 HOH WAT . C 3 HOH A 24 524 524 HOH WAT . C 3 HOH A 25 525 525 HOH WAT . C 3 HOH A 26 526 526 HOH WAT . C 3 HOH A 27 527 527 HOH WAT . C 3 HOH A 28 528 528 HOH WAT . C 3 HOH A 29 529 529 HOH WAT . C 3 HOH A 30 530 530 HOH WAT . C 3 HOH A 31 531 531 HOH WAT . C 3 HOH A 32 532 532 HOH WAT . C 3 HOH A 33 533 533 HOH WAT . C 3 HOH A 34 534 534 HOH WAT . C 3 HOH A 35 535 535 HOH WAT . C 3 HOH A 36 536 536 HOH WAT . C 3 HOH A 37 537 537 HOH WAT . C 3 HOH A 38 538 538 HOH WAT . C 3 HOH A 39 539 539 HOH WAT . C 3 HOH A 40 540 540 HOH WAT . C 3 HOH A 41 541 541 HOH WAT . C 3 HOH A 42 542 542 HOH WAT . C 3 HOH A 43 543 543 HOH WAT . C 3 HOH A 44 544 544 HOH WAT . C 3 HOH A 45 545 545 HOH WAT . C 3 HOH A 46 546 546 HOH WAT . C 3 HOH A 47 547 547 HOH WAT . C 3 HOH A 48 548 548 HOH WAT . C 3 HOH A 49 549 549 HOH WAT . C 3 HOH A 50 550 550 HOH WAT . C 3 HOH A 51 551 551 HOH WAT . C 3 HOH A 52 552 552 HOH WAT . C 3 HOH A 53 553 553 HOH WAT . C 3 HOH A 54 554 554 HOH WAT . C 3 HOH A 55 555 555 HOH WAT . C 3 HOH A 56 556 556 HOH WAT . C 3 HOH A 57 557 557 HOH WAT . C 3 HOH A 58 558 558 HOH WAT . C 3 HOH A 59 559 559 HOH WAT . C 3 HOH A 60 560 560 HOH WAT . C 3 HOH A 61 561 561 HOH WAT . C 3 HOH A 62 562 562 HOH WAT . C 3 HOH A 63 563 563 HOH WAT . C 3 HOH A 64 564 564 HOH WAT . C 3 HOH A 65 565 565 HOH WAT . C 3 HOH A 66 566 566 HOH WAT . C 3 HOH A 67 567 567 HOH WAT . C 3 HOH A 68 568 568 HOH WAT . C 3 HOH A 69 569 569 HOH WAT . C 3 HOH A 70 570 570 HOH WAT . C 3 HOH A 71 571 571 HOH WAT . C 3 HOH A 72 572 572 HOH WAT . C 3 HOH A 73 573 573 HOH WAT . C 3 HOH A 74 574 574 HOH WAT . C 3 HOH A 75 575 575 HOH WAT . C 3 HOH A 76 576 576 HOH WAT . C 3 HOH A 77 577 577 HOH WAT . C 3 HOH A 78 578 578 HOH WAT . C 3 HOH A 79 579 579 HOH WAT . C 3 HOH A 80 580 580 HOH WAT . C 3 HOH A 81 581 581 HOH WAT . C 3 HOH A 82 582 582 HOH WAT . C 3 HOH A 83 583 583 HOH WAT . C 3 HOH A 84 584 584 HOH WAT . C 3 HOH A 85 585 585 HOH WAT . C 3 HOH A 86 586 586 HOH WAT . C 3 HOH A 87 587 587 HOH WAT . C 3 HOH A 88 588 588 HOH WAT . C 3 HOH A 89 589 589 HOH WAT . C 3 HOH A 90 590 590 HOH WAT . C 3 HOH A 91 591 591 HOH WAT . C 3 HOH A 92 592 592 HOH WAT . C 3 HOH A 93 593 593 HOH WAT . C 3 HOH A 94 594 594 HOH WAT . C 3 HOH A 95 595 595 HOH WAT . C 3 HOH A 96 596 596 HOH WAT . C 3 HOH A 97 597 597 HOH WAT . C 3 HOH A 98 598 598 HOH WAT . C 3 HOH A 99 599 599 HOH WAT . C 3 HOH A 100 600 600 HOH WAT . C 3 HOH A 101 601 601 HOH WAT . C 3 HOH A 102 602 602 HOH WAT . C 3 HOH A 103 603 603 HOH WAT . C 3 HOH A 104 604 604 HOH WAT . C 3 HOH A 105 605 605 HOH WAT . C 3 HOH A 106 606 606 HOH WAT . C 3 HOH A 107 607 607 HOH WAT . C 3 HOH A 108 608 608 HOH WAT . C 3 HOH A 109 609 609 HOH WAT . C 3 HOH A 110 610 610 HOH WAT . C 3 HOH A 111 611 611 HOH WAT . C 3 HOH A 112 612 612 HOH WAT . C 3 HOH A 113 613 613 HOH WAT . C 3 HOH A 114 614 614 HOH WAT . C 3 HOH A 115 615 615 HOH WAT . C 3 HOH A 116 616 616 HOH WAT . C 3 HOH A 117 617 617 HOH WAT . C 3 HOH A 118 618 618 HOH WAT . C 3 HOH A 119 619 619 HOH WAT . C 3 HOH A 120 620 620 HOH WAT . C 3 HOH A 121 621 621 HOH WAT . C 3 HOH A 122 622 622 HOH WAT . C 3 HOH A 123 623 623 HOH WAT . C 3 HOH A 124 624 624 HOH WAT . C 3 HOH A 125 625 625 HOH WAT . C 3 HOH A 126 626 626 HOH WAT . C 3 HOH A 127 627 627 HOH WAT . C 3 HOH A 128 628 628 HOH WAT . C 3 HOH A 129 629 629 HOH WAT . C 3 HOH A 130 630 630 HOH WAT . C 3 HOH A 131 631 631 HOH WAT . C 3 HOH A 132 632 632 HOH WAT . C 3 HOH A 133 633 633 HOH WAT . C 3 HOH A 134 634 634 HOH WAT . C 3 HOH A 135 635 635 HOH WAT . C 3 HOH A 136 636 636 HOH WAT . C 3 HOH A 137 637 637 HOH WAT . C 3 HOH A 138 638 638 HOH WAT . C 3 HOH A 139 639 639 HOH WAT . C 3 HOH A 140 640 640 HOH WAT . C 3 HOH A 141 641 641 HOH WAT . C 3 HOH A 142 642 642 HOH WAT . C 3 HOH A 143 643 643 HOH WAT . C 3 HOH A 144 644 644 HOH WAT . C 3 HOH A 145 645 645 HOH WAT . C 3 HOH A 146 646 646 HOH WAT . C 3 HOH A 147 647 647 HOH WAT . C 3 HOH A 148 648 648 HOH WAT . C 3 HOH A 149 649 649 HOH WAT . C 3 HOH A 150 650 650 HOH WAT . C 3 HOH A 151 651 651 HOH WAT . C 3 HOH A 152 652 652 HOH WAT . C 3 HOH A 153 653 653 HOH WAT . C 3 HOH A 154 654 654 HOH WAT . C 3 HOH A 155 655 655 HOH WAT . C 3 HOH A 156 656 656 HOH WAT . C 3 HOH A 157 657 657 HOH WAT . C 3 HOH A 158 658 658 HOH WAT . C 3 HOH A 159 659 659 HOH WAT . C 3 HOH A 160 660 660 HOH WAT . C 3 HOH A 161 661 661 HOH WAT . C 3 HOH A 162 662 662 HOH WAT . C 3 HOH A 163 663 663 HOH WAT . C 3 HOH A 164 664 664 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -10.665 50.988 48.572 0.7 82.24 ? C1 NAG 300 A 1 HETATM 2 C C2 NAG . . . B 2 -12.133 51.311 48.26 0.7 84.02 ? C2 NAG 300 A 1 HETATM 3 C C3 NAG . . . B 2 -13 51.014 49.478 0.7 82.34 ? C3 NAG 300 A 1 HETATM 4 C C4 NAG . . . B 2 -12.569 51.911 50.63 0.7 79.32 ? C4 NAG 300 A 1 HETATM 5 C C5 NAG . . . B 2 -11.055 52.057 50.686 0.7 81.59 ? C5 NAG 300 A 1 HETATM 6 C C6 NAG . . . B 2 -10.54 52.039 52.111 0.7 87.46 ? C6 NAG 300 A 1 HETATM 7 C C7 NAG . . . B 2 -12.093 53.122 46.663 0.7 94.16 ? C7 NAG 300 A 1 HETATM 8 C C8 NAG . . . B 2 -13.334 53.647 45.952 0.7 86.9 ? C8 NAG 300 A 1 HETATM 9 N N2 NAG . . . B 2 -12.25 52.716 47.92 0.7 92.24 ? N2 NAG 300 A 1 HETATM 10 O O3 NAG . . . B 2 -12.865 49.651 49.854 0.7 80.81 ? O3 NAG 300 A 1 HETATM 11 O O4 NAG . . . B 2 -13.135 53.192 50.46 0.7 87.12 ? O4 NAG 300 A 1 HETATM 12 O O5 NAG . . . B 2 -10.426 50.967 49.991 0.7 80.46 ? O5 NAG 300 A 1 HETATM 13 O O6 NAG . . . B 2 -11.573 52.345 53.042 0.7 95.81 ? O6 NAG 300 A 1 HETATM 14 O O7 NAG . . . B 2 -11.004 53.092 46.076 0.7 91.71 ? O7 NAG 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #